Wall clock time and date at job start Mon Mar 30 2020 04:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46731 * 2 1 4 4 H 1.09002 * 109.46826 * 180.70084 * 3 2 1 5 5 C 1.50694 * 109.47516 * 300.69962 * 3 2 1 6 6 H 1.08003 * 120.00254 * 120.00180 * 5 3 2 7 7 C 1.37883 * 119.99950 * 300.00260 * 5 3 2 8 8 N 1.31512 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47062 * 90.00492 * 9 7 5 11 11 H 1.48510 * 109.46972 * 210.00136 * 9 7 5 12 12 H 1.48501 * 109.47229 * 329.99771 * 9 7 5 13 13 N 1.46899 * 109.47279 * 60.70459 * 3 2 1 14 14 C 1.46901 * 111.00367 * 86.37612 * 13 3 2 15 15 H 1.09000 * 109.46804 * 323.87823 * 14 13 3 16 16 C 1.52994 * 109.47268 * 83.87878 * 14 13 3 17 17 C 1.52998 * 109.46816 * 203.88055 * 14 13 3 18 18 C 1.52999 * 109.47615 * 65.00076 * 17 14 13 19 19 N 1.46494 * 109.47664 * 179.97438 * 18 17 14 20 20 C 1.34430 * 126.82894 * 124.99208 * 19 18 17 21 21 N 1.30834 * 108.07876 * 179.74084 * 20 19 18 22 22 C 1.33234 * 109.82653 * 0.26815 * 21 20 19 23 23 N 1.30713 * 108.95089 * 359.97438 * 22 21 20 24 24 H 1.09009 * 109.46861 * 55.69136 * 1 2 3 25 25 H 1.08998 * 109.46961 * 175.68507 * 1 2 3 26 26 H 1.08998 * 109.47741 * 295.68690 * 1 2 3 27 27 H 1.09000 * 109.47341 * 239.99962 * 2 1 3 28 28 H 1.08993 * 109.46970 * 119.99534 * 2 1 3 29 29 H 0.97001 * 120.00085 * 179.97438 * 8 7 5 30 30 H 1.00906 * 110.99652 * 210.33295 * 13 3 2 31 31 H 1.09001 * 109.47505 * 179.97438 * 16 14 13 32 32 H 1.08997 * 109.46985 * 300.00084 * 16 14 13 33 33 H 1.09000 * 109.47253 * 60.00219 * 16 14 13 34 34 H 1.08996 * 109.47256 * 304.99770 * 17 14 13 35 35 H 1.09008 * 109.46951 * 184.99657 * 17 14 13 36 36 H 1.08996 * 109.47058 * 59.99573 * 18 17 14 37 37 H 1.09008 * 109.46619 * 299.99785 * 18 17 14 38 38 H 1.08001 * 125.95754 * 0.02562 * 20 19 18 39 39 H 1.08006 * 125.52503 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0126 5 6 1.5235 2.1580 -1.2216 6 1 0.9038 3.0356 -1.1118 7 6 1.8421 1.6920 -2.4796 8 7 2.5963 0.6230 -2.6133 9 14 1.2014 2.5785 -3.9939 10 1 2.1745 3.6221 -4.4053 11 1 1.0239 1.6036 -5.1001 12 1 -0.1035 3.2142 -3.6803 13 7 1.5642 2.1301 1.2078 14 6 2.4785 1.9064 2.3357 15 1 2.8765 0.8929 2.2852 16 6 3.6304 2.9108 2.2653 17 6 1.7200 2.0915 3.6514 18 6 0.6475 1.0079 3.7788 19 7 -0.0784 1.1847 5.0389 20 6 -1.4074 1.3173 5.1916 21 7 -1.6583 1.4475 6.4690 22 6 -0.5196 1.4090 7.1595 23 7 0.4763 1.2525 6.3274 24 1 -0.3633 0.5793 -0.8489 25 1 -0.3633 -1.0247 -0.0773 26 1 -0.3634 0.4454 0.9261 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.8202 0.2950 -3.4983 30 1 1.4364 3.1162 1.0359 31 1 4.3086 2.7451 3.1024 32 1 4.1707 2.7789 1.3279 33 1 3.2324 3.9243 2.3158 34 1 1.2474 3.0736 3.6633 35 1 2.4164 2.0133 4.4864 36 1 1.1201 0.0258 3.7669 37 1 -0.0490 1.0861 2.9439 38 1 -2.1404 1.3122 4.3985 39 1 -0.4333 1.4926 8.2328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124257148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:52 Heat of formation + Delta-G solvation = 59.833098 kcal Electronic energy + Delta-G solvation = -18911.290160 eV Core-core repulsion = 16082.730070 eV Total energy + Delta-G solvation = -2828.560090 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.89098 -39.00852 -36.31520 -34.68647 -33.12482 -32.09170 -30.96227 -29.43608 -27.65960 -25.37069 -24.95876 -22.83182 -22.48058 -21.76999 -20.60221 -18.28511 -18.02785 -16.98409 -16.73869 -16.03590 -15.72158 -15.51065 -15.39606 -14.98827 -14.61106 -14.28278 -13.81568 -13.73252 -13.46267 -13.28769 -13.07335 -12.81340 -12.69728 -12.41767 -12.29051 -12.11332 -11.80017 -11.69561 -11.45003 -11.20729 -10.92196 -10.72707 -10.70660 -10.53569 -10.48768 -8.92452 -8.05897 -6.16523 0.78783 1.42634 1.45984 1.50813 1.53820 2.08264 2.45111 3.24001 3.59140 3.59595 3.67343 3.92568 4.12891 4.27862 4.38729 4.44177 4.58191 4.62322 4.73180 4.83264 4.88055 4.96091 5.01836 5.09435 5.22248 5.27530 5.39367 5.42296 5.52044 5.58148 5.65857 5.77118 5.92392 5.98367 5.99169 6.35456 6.55555 6.86538 7.10801 7.19906 7.52461 8.98737 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032840 B = 0.004795 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.404411 B = 5837.927042 C = 6164.473831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.225 3.775 4 H -0.034 1.034 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.947 3.053 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.670 5.670 14 C 0.088 3.912 15 H 0.062 0.938 16 C -0.171 4.171 17 C -0.094 4.094 18 C 0.139 3.861 19 N -0.376 5.376 20 C 0.256 3.744 21 N -0.579 5.579 22 C 0.187 3.813 23 N -0.353 5.353 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.022 0.978 29 H 0.258 0.742 30 H 0.333 0.667 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.250 0.750 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 1.604 12.587 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.116 3.884 4 H -0.016 1.016 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.181 4.181 8 N -0.557 5.557 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.300 5.300 14 C -0.024 4.024 15 H 0.080 0.920 16 C -0.230 4.230 17 C -0.133 4.133 18 C 0.018 3.982 19 N -0.166 5.166 20 C -0.041 4.041 21 N -0.308 5.308 22 C -0.115 4.115 23 N -0.182 5.182 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.266 0.734 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.326 0.949 12.897 13.637 hybrid contribution 0.839 0.781 -1.678 2.032 sum -3.487 1.731 11.219 11.876 Atomic orbital electron populations 1.21343 0.95747 0.98214 1.01233 1.21320 0.96457 0.97714 0.98337 1.18858 0.91023 0.91942 0.86531 1.01598 1.21485 1.31014 1.11790 0.91351 0.92368 1.25547 0.95446 0.95607 1.01474 1.70016 1.38232 1.24102 1.23305 0.85730 0.78929 0.78241 0.79739 1.20805 1.21537 1.19119 1.60752 1.47415 1.16118 1.05695 1.21450 0.91294 0.98534 0.91095 0.91964 1.22362 0.99371 0.99977 1.01247 1.21598 0.96985 0.98308 0.96420 1.21946 0.96361 1.00046 0.79867 1.50796 1.06726 1.52382 1.06726 1.26783 0.86101 0.94754 0.96428 1.70558 1.30170 1.26580 1.03443 1.26564 0.84923 0.97795 1.02241 1.77944 1.24243 1.26944 0.89073 0.94754 0.95302 0.91921 0.93062 0.95937 0.93275 0.84946 0.91409 0.94601 0.92063 0.91692 0.91272 0.90134 0.85767 0.73425 0.74309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.18 9.53 71.98 0.69 -3.49 16 2 C -0.10 -4.38 5.57 30.60 0.17 -4.21 16 3 C 0.22 10.12 2.10 44.17 0.09 10.22 16 4 H -0.03 -1.74 7.03 -2.39 -0.02 -1.76 16 5 C -0.52 -25.83 7.22 25.60 0.18 -25.65 16 6 H 0.06 2.85 7.60 -2.91 -0.02 2.83 16 7 C 0.02 0.96 5.30 84.66 0.45 1.40 16 8 N -0.92 -50.61 11.32 21.45 0.24 -50.37 16 9 Si 0.95 41.74 29.54 68.60 2.03 43.76 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 N -0.67 -23.33 4.85 -473.33 -2.30 -25.63 16 14 C 0.09 2.61 2.40 44.91 0.11 2.71 16 15 H 0.06 2.03 7.21 -2.39 -0.02 2.01 16 16 C -0.17 -4.94 9.14 71.98 0.66 -4.28 16 17 C -0.09 -2.34 5.10 30.59 0.16 -2.19 16 18 C 0.14 3.27 6.44 86.38 0.56 3.82 16 19 N -0.38 -9.19 3.69 -352.07 -1.30 -10.49 16 20 C 0.26 5.55 12.63 180.36 2.28 7.83 16 21 N -0.58 -14.37 11.19 -204.00 -2.28 -16.65 16 22 C 0.19 4.36 13.03 180.77 2.36 6.71 16 23 N -0.35 -9.45 12.57 -61.25 -0.77 -10.22 16 24 H 0.03 1.48 7.04 -2.38 -0.02 1.46 16 25 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 2.09 6.78 -2.39 -0.02 2.07 16 27 H 0.05 2.64 6.09 -2.39 -0.01 2.62 16 28 H 0.02 0.90 7.51 -2.39 -0.02 0.88 16 29 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.33 11.72 7.95 -89.69 -0.71 11.01 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.03 1.22 7.36 -2.39 -0.02 1.20 16 33 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.12 2.83 6.72 -2.38 -0.02 2.82 16 38 H 0.25 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.24 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -60.08 317.51 3.63 -56.44 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.32 Total: 20.27 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 7.69 Total: -7.12 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -6.41 Total: -113.36 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -60.08 3.63 -56.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124257148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.277 kcal (2) G-P(sol) polarization free energy of solvation -60.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds