Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47063 * 2 1 4 4 H 1.08997 * 109.47528 * 305.32955 * 3 2 1 5 5 C 1.50710 * 109.46809 * 185.33049 * 3 2 1 6 6 H 1.07996 * 120.00103 * 239.99686 * 5 3 2 7 7 C 1.37878 * 119.99793 * 60.00248 * 5 3 2 8 8 N 1.31514 * 119.99967 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00200 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46854 * 59.99671 * 9 7 5 11 11 H 1.48489 * 109.47543 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46884 * 299.99905 * 9 7 5 13 13 N 1.46902 * 109.47303 * 65.33455 * 3 2 1 14 14 C 1.46897 * 110.99858 * 205.95457 * 13 3 2 15 15 H 1.08995 * 109.47347 * 327.72449 * 14 13 3 16 16 C 1.53002 * 109.46787 * 87.71990 * 14 13 3 17 17 C 1.53002 * 109.46985 * 207.71539 * 14 13 3 18 18 C 1.52994 * 109.47079 * 65.00753 * 17 14 13 19 19 N 1.46500 * 109.47368 * 179.97438 * 18 17 14 20 20 C 1.34422 * 126.82526 * 124.70609 * 19 18 17 21 21 N 1.30830 * 108.08024 * 179.89374 * 20 19 18 22 22 C 1.33239 * 109.82741 * 0.38444 * 21 20 19 23 23 N 1.30716 * 108.94611 * 359.75709 * 22 21 20 24 24 H 1.09000 * 109.47339 * 179.16486 * 1 2 3 25 25 H 1.08997 * 109.47436 * 299.16898 * 1 2 3 26 26 H 1.09008 * 109.46680 * 59.16959 * 1 2 3 27 27 H 1.08997 * 109.46909 * 239.99588 * 2 1 3 28 28 H 1.09005 * 109.46662 * 120.00125 * 2 1 3 29 29 H 0.97000 * 120.00084 * 180.02562 * 8 7 5 30 30 H 1.00896 * 110.99543 * 329.91450 * 13 3 2 31 31 H 1.09000 * 109.47312 * 183.97163 * 16 14 13 32 32 H 1.08996 * 109.47272 * 303.97169 * 16 14 13 33 33 H 1.09000 * 109.47285 * 63.97170 * 16 14 13 34 34 H 1.08998 * 109.47266 * 305.00065 * 17 14 13 35 35 H 1.09008 * 109.46400 * 185.00216 * 17 14 13 36 36 H 1.08998 * 109.47022 * 299.99815 * 18 17 14 37 37 H 1.09000 * 109.47202 * 59.99238 * 18 17 14 38 38 H 1.08003 * 125.95895 * 0.03855 * 20 19 18 39 39 H 1.07996 * 125.53249 * 179.72573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6008 1.9831 -0.8384 5 6 3.5413 1.4444 -0.1320 6 1 4.1508 1.8875 0.6416 7 6 4.1366 0.8806 -1.2405 8 7 3.3943 0.3407 -2.1824 9 14 5.9973 0.8837 -1.4046 10 1 6.5961 0.1475 -0.2623 11 1 6.3832 0.2227 -2.6771 12 1 6.4919 2.2840 -1.4050 13 7 1.6583 2.0968 1.2586 14 6 1.5565 3.5520 1.0856 15 1 2.2797 3.8806 0.3393 16 6 0.1442 3.9127 0.6205 17 6 1.8473 4.2456 2.4180 18 6 3.3003 3.9867 2.8212 19 7 3.5790 4.6513 4.0967 20 6 4.0578 4.0799 5.2152 21 7 4.1685 5.0084 6.1302 22 6 3.7639 6.1785 5.6379 23 7 3.3933 6.0109 4.3956 24 1 -0.3634 -1.0275 -0.0150 25 1 -0.3634 0.5008 0.8973 26 1 -0.3633 0.5267 -0.8825 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8131 -0.0562 -2.9621 30 1 0.7967 1.7142 1.6182 31 1 0.0886 4.9834 0.4243 32 1 -0.0893 3.3636 -0.2916 33 1 -0.5729 3.6480 1.3975 34 1 1.1814 3.8516 3.1857 35 1 1.6852 5.3183 2.3121 36 1 3.4624 2.9141 2.9270 37 1 3.9662 4.3807 2.0534 38 1 4.3097 3.0366 5.3366 39 1 3.7446 7.1137 6.1777 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124257347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = 74.710409 kcal Electronic energy + Delta-G solvation = -18887.074567 eV Core-core repulsion = 16059.159606 eV Total energy + Delta-G solvation = -2827.914961 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85483 -37.53200 -34.88440 -33.18473 -31.68300 -31.04245 -29.39683 -28.33314 -26.15784 -24.15320 -22.86808 -21.79527 -21.25243 -20.07725 -19.62210 -16.99491 -16.27475 -15.72281 -15.26397 -14.73198 -14.48697 -14.27471 -13.99454 -13.57909 -13.20847 -12.87039 -12.62477 -12.41027 -12.03279 -11.79042 -11.67960 -11.34263 -11.06223 -10.88513 -10.77251 -10.72930 -10.40484 -10.03357 -9.90544 -9.74589 -9.65581 -9.59316 -9.43186 -9.17046 -8.41922 -7.34127 -6.03912 -4.08942 1.81799 2.56296 3.09171 3.27748 3.33364 3.35346 4.37351 4.45528 4.71057 5.02019 5.14285 5.17565 5.25912 5.47483 5.55115 5.75223 5.81722 5.86726 6.04795 6.10093 6.10975 6.18844 6.32611 6.33664 6.42319 6.50303 6.58043 6.62691 6.78650 7.00783 7.02572 7.11156 7.43684 7.71630 7.82452 8.21406 8.22412 8.32279 8.66186 8.97435 9.56529 11.01209 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.006170 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.924470 B = 4537.035565 C = 5509.505479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.495 4.495 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.684 5.684 14 C 0.089 3.911 15 H 0.085 0.915 16 C -0.175 4.175 17 C -0.108 4.108 18 C 0.132 3.868 19 N -0.366 5.366 20 C 0.252 3.748 21 N -0.559 5.559 22 C 0.185 3.815 23 N -0.323 5.323 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.260 0.740 30 H 0.319 0.681 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.217 0.783 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 5.377 8.675 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.534 4.534 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.315 5.315 14 C -0.023 4.023 15 H 0.104 0.896 16 C -0.235 4.235 17 C -0.147 4.147 18 C 0.012 3.988 19 N -0.156 5.156 20 C -0.045 4.045 21 N -0.287 5.287 22 C -0.118 4.118 23 N -0.152 5.152 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.234 0.766 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.654 5.771 8.497 10.609 hybrid contribution 0.158 -0.242 -0.810 0.860 sum -2.496 5.529 7.687 9.793 Atomic orbital electron populations 1.21884 0.99656 0.99575 0.99615 1.21774 0.91175 1.00470 1.03041 1.19157 0.95257 0.89883 0.84489 0.97829 1.21124 0.91140 1.36816 1.04339 0.92254 1.24943 0.97939 0.95610 0.95881 1.69852 1.34809 1.39093 1.09606 0.86665 0.85908 0.78147 0.77278 1.20305 1.21435 1.20461 1.60829 1.36434 1.01405 1.32873 1.21416 0.95582 0.90274 0.95035 0.89642 1.22451 0.98337 1.01303 1.01363 1.21787 0.94205 1.00401 0.98335 1.22071 0.98452 0.98168 0.80126 1.50858 1.46156 1.05808 1.12788 1.26060 0.95325 1.00553 0.82576 1.70500 1.26328 0.99598 1.32242 1.25899 0.97604 0.97919 0.90379 1.77975 1.25376 0.94481 1.17349 0.94475 0.94618 0.93934 0.88312 0.94110 0.92970 0.86306 0.92999 0.92346 0.93280 0.92149 0.91486 0.86007 0.89457 0.76643 0.77237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.73 37.16 0.36 -2.35 16 2 C -0.13 -2.75 5.35 -26.73 -0.14 -2.90 16 3 C 0.22 4.92 1.83 -68.86 -0.13 4.79 16 4 H 0.00 0.10 7.31 -51.93 -0.38 -0.28 16 5 C -0.50 -12.43 8.56 -34.44 -0.29 -12.72 16 6 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.89 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.68 -12.45 5.51 -100.95 -0.56 -13.00 16 14 C 0.09 1.44 2.38 -67.71 -0.16 1.28 16 15 H 0.09 1.60 7.65 -51.93 -0.40 1.20 16 16 C -0.18 -2.59 9.15 37.16 0.34 -2.25 16 17 C -0.11 -1.55 5.10 -26.73 -0.14 -1.69 16 18 C 0.13 1.91 6.44 -4.04 -0.03 1.88 16 19 N -0.37 -5.29 3.69 -62.63 -0.23 -5.52 16 20 C 0.25 3.30 12.63 -90.66 -1.14 2.16 16 21 N -0.56 -8.01 11.19 -15.83 -0.18 -8.18 16 22 C 0.18 2.49 13.03 -91.81 -1.20 1.29 16 23 N -0.32 -4.92 12.57 29.29 0.37 -4.55 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.57 6.47 -51.93 -0.34 0.24 16 26 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.10 2.48 5.94 -51.93 -0.31 2.17 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.32 5.46 6.20 -39.29 -0.24 5.22 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.94 7.62 -51.93 -0.40 0.55 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.12 1.77 7.70 -51.93 -0.40 1.37 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.22 2.02 8.06 -52.48 -0.42 1.60 16 39 H 0.21 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -28.24 320.86 -9.01 -37.25 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.23 Total: 6.45 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.62 Total: -9.10 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.03 Total: -54.89 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.24 -9.01 -37.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124257347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.962 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds