Wall clock time and date at job start Mon Mar 30 2020 04:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46725 * 2 1 4 4 H 1.09002 * 109.47170 * 54.94184 * 3 2 1 5 5 C 1.50697 * 109.46890 * 174.94021 * 3 2 1 6 6 H 1.08003 * 120.00035 * 119.99794 * 5 3 2 7 7 C 1.37877 * 120.00037 * 300.00266 * 5 3 2 8 8 N 1.31513 * 119.99690 * 179.97438 * 7 5 3 9 9 Si 1.86790 * 120.00138 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47723 * 90.00206 * 9 7 5 11 11 H 1.48502 * 109.47263 * 210.00227 * 9 7 5 12 12 H 1.48500 * 109.47100 * 329.99976 * 9 7 5 13 13 N 1.46897 * 109.47215 * 294.94242 * 3 2 1 14 14 C 1.46898 * 110.99976 * 156.04438 * 13 3 2 15 15 H 1.08995 * 109.46932 * 34.66847 * 14 13 3 16 16 C 1.52998 * 109.46965 * 274.66540 * 14 13 3 17 17 C 1.53004 * 109.46946 * 154.66655 * 14 13 3 18 18 C 1.52999 * 109.47419 * 295.00078 * 17 14 13 19 19 N 1.46490 * 109.47218 * 180.02562 * 18 17 14 20 20 C 1.34432 * 126.82535 * 124.70782 * 19 18 17 21 21 N 1.30831 * 108.08001 * 179.88805 * 20 19 18 22 22 C 1.33244 * 109.82927 * 0.38796 * 21 20 19 23 23 N 1.30720 * 108.94328 * 359.75629 * 22 21 20 24 24 H 1.09001 * 109.46620 * 55.43008 * 1 2 3 25 25 H 1.08994 * 109.47642 * 295.42813 * 1 2 3 26 26 H 1.09004 * 109.46854 * 175.42571 * 1 2 3 27 27 H 1.08995 * 109.47081 * 119.99322 * 2 1 3 28 28 H 1.08991 * 109.47400 * 240.00499 * 2 1 3 29 29 H 0.97007 * 120.00391 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99748 * 279.99971 * 13 3 2 31 31 H 1.08999 * 109.47347 * 304.94896 * 16 14 13 32 32 H 1.08997 * 109.46895 * 64.95613 * 16 14 13 33 33 H 1.09000 * 109.46827 * 184.95251 * 16 14 13 34 34 H 1.08997 * 109.47273 * 55.00026 * 17 14 13 35 35 H 1.08997 * 109.46957 * 174.99932 * 17 14 13 36 36 H 1.09006 * 109.46851 * 299.99921 * 18 17 14 37 37 H 1.09002 * 109.47140 * 59.99507 * 18 17 14 38 38 H 1.08010 * 125.95681 * 0.04062 * 20 19 18 39 39 H 1.07992 * 125.52762 * 179.72242 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9819 0.8412 5 6 3.5417 1.4445 0.1253 6 1 4.1478 1.8888 -0.6504 7 6 4.1420 0.8789 1.2302 8 7 5.4526 0.8802 1.3392 9 14 3.0939 0.1110 2.5721 10 1 2.8723 -1.3251 2.2664 11 1 3.7904 0.2374 3.8776 12 1 1.7856 0.8104 2.6394 13 7 1.6525 2.0989 -1.2558 14 6 1.5975 3.5578 -1.0922 15 1 2.3733 3.8746 -0.3952 16 6 0.2259 3.9582 -0.5453 17 6 1.8230 4.2317 -2.4471 18 6 3.2416 3.9324 -2.9359 19 7 3.4576 4.5783 -4.2329 20 6 4.4417 5.4369 -4.5515 21 7 4.2877 5.7845 -5.8034 22 6 3.2163 5.1777 -6.3125 23 7 2.6742 4.4281 -5.3889 24 1 -0.3632 0.5831 -0.8462 25 1 -0.3634 0.4412 0.9280 26 1 -0.3633 -1.0244 -0.0820 27 1 1.8933 -0.5137 0.8900 28 1 1.8934 -0.5137 -0.8899 29 1 5.8751 0.4826 2.1168 30 1 2.2772 1.8424 -2.0055 31 1 -0.5542 3.5650 -1.1972 32 1 0.1013 3.5500 0.4576 33 1 0.1534 5.0451 -0.5067 34 1 1.1016 3.8478 -3.1685 35 1 1.6943 5.3091 -2.3429 36 1 3.9630 4.3165 -2.2146 37 1 3.3703 2.8551 -3.0401 38 1 5.2245 5.7781 -3.8902 39 1 2.8541 5.2878 -7.3239 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124257546.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:58 Heat of formation + Delta-G solvation = 81.983470 kcal Electronic energy + Delta-G solvation = -18933.203809 eV Core-core repulsion = 16105.604231 eV Total energy + Delta-G solvation = -2827.599577 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.95205 -37.71799 -35.03123 -33.19221 -31.98002 -31.12809 -29.64645 -28.66565 -26.50775 -24.22655 -22.58926 -21.90918 -21.40347 -20.09001 -19.68309 -17.38296 -16.87514 -15.90411 -15.33257 -14.99018 -14.78053 -14.20052 -14.12389 -13.58935 -13.39566 -13.02248 -12.62453 -12.38113 -12.17636 -11.93798 -11.70164 -11.49743 -11.34457 -11.14273 -10.80240 -10.70557 -10.59137 -10.19635 -9.92996 -9.81166 -9.72175 -9.53645 -9.50738 -9.26687 -8.65644 -7.45655 -6.22236 -4.23692 1.72261 2.41148 3.01754 3.20340 3.31312 3.32962 4.29569 4.36975 4.52509 4.89216 4.96377 5.01050 5.12956 5.29787 5.32481 5.51806 5.87116 5.87862 5.95835 5.99226 6.03767 6.16650 6.18169 6.29993 6.31979 6.48588 6.50471 6.64370 6.67231 6.69943 6.87599 6.94863 7.06332 7.21635 7.48140 7.94681 8.13574 8.28304 8.37980 8.77464 9.41898 10.90296 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025113 B = 0.005587 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.683998 B = 5010.158399 C = 5624.794339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.183 3.817 4 H 0.034 0.966 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.075 3.925 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.677 5.677 14 C 0.088 3.912 15 H 0.055 0.945 16 C -0.134 4.134 17 C -0.125 4.125 18 C 0.123 3.877 19 N -0.367 5.367 20 C 0.250 3.750 21 N -0.555 5.555 22 C 0.187 3.813 23 N -0.315 5.315 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.264 0.736 30 H 0.332 0.668 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.217 0.783 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 6.840 -6.936 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.052 0.948 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.309 5.309 14 C -0.023 4.023 15 H 0.073 0.927 16 C -0.192 4.192 17 C -0.164 4.164 18 C 0.002 3.998 19 N -0.158 5.158 20 C -0.047 4.047 21 N -0.283 5.283 22 C -0.116 4.116 23 N -0.144 5.144 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.233 0.767 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.072 6.442 -6.922 11.808 hybrid contribution 0.833 -0.366 1.121 1.444 sum -6.239 6.076 -5.801 10.464 Atomic orbital electron populations 1.21744 0.97544 0.99532 1.01331 1.21812 0.93903 0.99365 1.00332 1.19616 0.94140 0.90641 0.88229 0.94768 1.21705 0.90487 1.39431 1.07080 0.91097 1.24990 0.94747 0.95178 0.97959 1.69905 1.08883 1.44878 1.29749 0.86814 0.80590 0.79934 0.80673 1.20466 1.22633 1.18944 1.60856 1.56282 1.05109 1.08626 1.21324 0.97333 0.89594 0.94006 0.92657 1.21750 0.97054 0.99213 1.01224 1.22007 0.94892 1.00938 0.98572 1.22120 0.99997 0.99275 0.78438 1.50691 1.20438 1.33772 1.10868 1.26079 0.93897 0.90839 0.93842 1.70511 1.20696 1.29168 1.07915 1.25952 0.91649 0.93702 1.00291 1.78037 1.18596 1.24713 0.93050 0.91662 0.94362 0.94865 0.93786 0.92509 0.92572 0.84963 0.92481 0.92693 0.93551 0.90019 0.91587 0.87663 0.88518 0.76653 0.77044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.85 37.16 0.37 -2.20 16 2 C -0.12 -2.43 5.11 -26.72 -0.14 -2.56 16 3 C 0.18 3.94 1.39 -68.86 -0.10 3.85 16 4 H 0.03 0.78 6.24 -51.93 -0.32 0.46 16 5 C -0.55 -13.95 8.79 -34.44 -0.30 -14.25 16 6 H 0.07 1.91 8.00 -52.48 -0.42 1.49 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.90 -25.99 13.96 55.43 0.77 -25.22 16 9 Si 0.89 21.21 24.41 -169.99 -4.15 17.06 16 10 H -0.28 -6.54 6.83 56.52 0.39 -6.15 16 11 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.06 6.53 56.52 0.37 -5.70 16 13 N -0.68 -12.25 5.43 -100.95 -0.55 -12.80 16 14 C 0.09 1.40 2.45 -67.71 -0.17 1.23 16 15 H 0.06 0.99 7.59 -51.93 -0.39 0.59 16 16 C -0.13 -1.95 9.38 37.16 0.35 -1.60 16 17 C -0.13 -1.70 5.01 -26.73 -0.13 -1.83 16 18 C 0.12 1.65 6.38 -4.05 -0.03 1.63 16 19 N -0.37 -5.04 3.69 -62.63 -0.23 -5.27 16 20 C 0.25 3.10 12.63 -90.65 -1.14 1.96 16 21 N -0.56 -7.65 11.19 -15.83 -0.18 -7.83 16 22 C 0.19 2.43 13.03 -91.80 -1.20 1.24 16 23 N -0.32 -4.66 12.57 29.29 0.37 -4.30 16 24 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.99 3.22 -51.93 -0.17 0.82 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.33 6.04 6.19 -39.29 -0.24 5.80 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.86 7.51 -51.93 -0.39 0.47 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 1.31 8.09 -51.93 -0.42 0.89 16 37 H 0.10 1.44 6.43 -51.93 -0.33 1.10 16 38 H 0.22 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.21 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -29.97 313.50 -7.90 -37.88 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.08 Total: 6.38 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.58 Total: -10.63 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.19 Total: -55.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.15 Total: 17.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.97 -7.90 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124257546.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.858 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds