Wall clock time and date at job start Mon Mar 30 2020 04:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46725 * 2 1 4 4 H 1.09002 * 109.47170 * 54.94184 * 3 2 1 5 5 C 1.50697 * 109.46890 * 174.94021 * 3 2 1 6 6 H 1.08003 * 120.00035 * 119.99794 * 5 3 2 7 7 C 1.37877 * 120.00037 * 300.00266 * 5 3 2 8 8 N 1.31513 * 119.99690 * 179.97438 * 7 5 3 9 9 Si 1.86790 * 120.00138 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47723 * 90.00206 * 9 7 5 11 11 H 1.48502 * 109.47263 * 210.00227 * 9 7 5 12 12 H 1.48500 * 109.47100 * 329.99976 * 9 7 5 13 13 N 1.46897 * 109.47215 * 294.94242 * 3 2 1 14 14 C 1.46898 * 110.99976 * 156.04438 * 13 3 2 15 15 H 1.08995 * 109.46932 * 34.66847 * 14 13 3 16 16 C 1.52998 * 109.46965 * 274.66540 * 14 13 3 17 17 C 1.53004 * 109.46946 * 154.66655 * 14 13 3 18 18 C 1.52999 * 109.47419 * 295.00078 * 17 14 13 19 19 N 1.46490 * 109.47218 * 180.02562 * 18 17 14 20 20 C 1.34432 * 126.82535 * 124.70782 * 19 18 17 21 21 N 1.30831 * 108.08001 * 179.88805 * 20 19 18 22 22 C 1.33244 * 109.82927 * 0.38796 * 21 20 19 23 23 N 1.30720 * 108.94328 * 359.75629 * 22 21 20 24 24 H 1.09001 * 109.46620 * 55.43008 * 1 2 3 25 25 H 1.08994 * 109.47642 * 295.42813 * 1 2 3 26 26 H 1.09004 * 109.46854 * 175.42571 * 1 2 3 27 27 H 1.08995 * 109.47081 * 119.99322 * 2 1 3 28 28 H 1.08991 * 109.47400 * 240.00499 * 2 1 3 29 29 H 0.97007 * 120.00391 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99748 * 279.99971 * 13 3 2 31 31 H 1.08999 * 109.47347 * 304.94896 * 16 14 13 32 32 H 1.08997 * 109.46895 * 64.95613 * 16 14 13 33 33 H 1.09000 * 109.46827 * 184.95251 * 16 14 13 34 34 H 1.08997 * 109.47273 * 55.00026 * 17 14 13 35 35 H 1.08997 * 109.46957 * 174.99932 * 17 14 13 36 36 H 1.09006 * 109.46851 * 299.99921 * 18 17 14 37 37 H 1.09002 * 109.47140 * 59.99507 * 18 17 14 38 38 H 1.08010 * 125.95681 * 0.04062 * 20 19 18 39 39 H 1.07992 * 125.52762 * 179.72242 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9819 0.8412 5 6 3.5417 1.4445 0.1253 6 1 4.1478 1.8888 -0.6504 7 6 4.1420 0.8789 1.2302 8 7 5.4526 0.8802 1.3392 9 14 3.0939 0.1110 2.5721 10 1 2.8723 -1.3251 2.2664 11 1 3.7904 0.2374 3.8776 12 1 1.7856 0.8104 2.6394 13 7 1.6525 2.0989 -1.2558 14 6 1.5975 3.5578 -1.0922 15 1 2.3733 3.8746 -0.3952 16 6 0.2259 3.9582 -0.5453 17 6 1.8230 4.2317 -2.4471 18 6 3.2416 3.9324 -2.9359 19 7 3.4576 4.5783 -4.2329 20 6 4.4417 5.4369 -4.5515 21 7 4.2877 5.7845 -5.8034 22 6 3.2163 5.1777 -6.3125 23 7 2.6742 4.4281 -5.3889 24 1 -0.3632 0.5831 -0.8462 25 1 -0.3634 0.4412 0.9280 26 1 -0.3633 -1.0244 -0.0820 27 1 1.8933 -0.5137 0.8900 28 1 1.8934 -0.5137 -0.8899 29 1 5.8751 0.4826 2.1168 30 1 2.2772 1.8424 -2.0055 31 1 -0.5542 3.5650 -1.1972 32 1 0.1013 3.5500 0.4576 33 1 0.1534 5.0451 -0.5067 34 1 1.1016 3.8478 -3.1685 35 1 1.6943 5.3091 -2.3429 36 1 3.9630 4.3165 -2.2146 37 1 3.3703 2.8551 -3.0401 38 1 5.2245 5.7781 -3.8902 39 1 2.8541 5.2878 -7.3239 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124257546.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:57 Heat of formation + Delta-G solvation = 64.087730 kcal Electronic energy + Delta-G solvation = -18933.979826 eV Core-core repulsion = 16105.604231 eV Total energy + Delta-G solvation = -2828.375595 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.96223 -39.15364 -36.44857 -34.58129 -33.82721 -32.15141 -31.05739 -29.82821 -28.27689 -25.36058 -24.28862 -22.90165 -22.48550 -21.68733 -21.04984 -19.09299 -18.14785 -17.24220 -16.79517 -16.43773 -15.93453 -15.51784 -15.18593 -15.14369 -14.78320 -14.54491 -14.09916 -13.84093 -13.60883 -13.26921 -13.17811 -12.94167 -12.67350 -12.45237 -12.41253 -12.14125 -11.95055 -11.77274 -11.50102 -11.27727 -11.11955 -10.97957 -10.76885 -10.66763 -10.57996 -9.03528 -8.31353 -6.34538 0.72217 1.30780 1.36038 1.39217 1.45135 2.02865 2.31031 3.05434 3.46144 3.52898 3.53385 3.85690 3.97045 4.18132 4.24425 4.37273 4.46339 4.49042 4.60501 4.67615 4.72107 4.86820 4.96324 5.02501 5.06795 5.16776 5.23272 5.29404 5.31014 5.48358 5.49372 5.52939 5.57442 5.65817 5.89320 6.13663 6.44392 6.68671 6.82772 7.13447 7.34882 8.83912 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025113 B = 0.005587 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.683998 B = 5010.158399 C = 5624.794339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.119 4.119 3 C 0.190 3.810 4 H 0.028 0.972 5 C -0.539 4.539 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.944 5.944 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.304 1.304 12 H -0.248 1.248 13 N -0.669 5.669 14 C 0.088 3.912 15 H 0.034 0.966 16 C -0.130 4.130 17 C -0.108 4.108 18 C 0.129 3.871 19 N -0.377 5.377 20 C 0.253 3.747 21 N -0.576 5.576 22 C 0.189 3.811 23 N -0.348 5.348 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.052 0.948 29 H 0.263 0.737 30 H 0.330 0.670 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.250 0.750 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 7.413 -7.241 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.080 3.920 4 H 0.045 0.955 5 C -0.578 4.578 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.232 1.232 12 H -0.172 1.172 13 N -0.300 5.300 14 C -0.023 4.023 15 H 0.052 0.948 16 C -0.187 4.187 17 C -0.147 4.147 18 C 0.007 3.993 19 N -0.167 5.167 20 C -0.043 4.043 21 N -0.304 5.304 22 C -0.113 4.113 23 N -0.177 5.177 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.266 0.734 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -8.797 7.023 -7.244 13.386 hybrid contribution 1.412 -0.472 1.105 1.854 sum -7.385 6.551 -6.139 11.625 Atomic orbital electron populations 1.21652 0.94751 1.01059 1.01786 1.21775 0.96401 0.98123 0.99433 1.19443 0.91297 0.91699 0.89522 0.95454 1.22068 0.92626 1.37370 1.05693 0.93647 1.25724 0.95558 0.96179 1.00348 1.70036 1.10637 1.47011 1.30690 0.85958 0.79709 0.79528 0.77822 1.19879 1.23205 1.17202 1.60876 1.55558 1.06559 1.06959 1.21387 0.97730 0.88207 0.94958 0.94774 1.21709 0.95948 1.00702 1.00383 1.21812 0.94677 1.01382 0.96792 1.21986 1.00260 0.98241 0.78812 1.50662 1.20968 1.34369 1.10666 1.26813 0.93798 0.89685 0.93987 1.70566 1.21271 1.29949 1.08601 1.26626 0.91019 0.92473 1.01231 1.77998 1.19871 1.26057 0.93754 0.91034 0.94024 0.92879 0.95197 0.92947 0.92769 0.85114 0.91925 0.93917 0.91310 0.90677 0.90127 0.86852 0.90435 0.73407 0.74025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.85 71.98 0.71 -3.72 16 2 C -0.12 -4.80 5.11 30.60 0.16 -4.64 16 3 C 0.19 8.06 1.39 44.17 0.06 8.12 16 4 H 0.03 1.22 6.24 -2.39 -0.01 1.21 16 5 C -0.54 -27.71 8.79 25.60 0.23 -27.49 16 6 H 0.05 2.51 8.00 -2.91 -0.02 2.49 16 7 C 0.02 1.12 5.45 84.65 0.46 1.58 16 8 N -0.94 -56.01 13.96 21.45 0.30 -55.71 16 9 Si 0.94 43.55 24.41 68.60 1.67 45.22 16 10 H -0.27 -12.26 6.83 99.48 0.68 -11.58 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.25 -10.69 6.53 99.48 0.65 -10.04 16 13 N -0.67 -23.62 5.43 -473.31 -2.57 -26.19 16 14 C 0.09 2.68 2.45 44.92 0.11 2.79 16 15 H 0.03 1.20 7.59 -2.39 -0.02 1.18 16 16 C -0.13 -3.48 9.38 71.98 0.68 -2.81 16 17 C -0.11 -2.78 5.01 30.60 0.15 -2.63 16 18 C 0.13 3.39 6.38 86.38 0.55 3.94 16 19 N -0.38 -9.96 3.69 -352.06 -1.30 -11.26 16 20 C 0.25 5.89 12.63 180.36 2.28 8.17 16 21 N -0.58 -14.97 11.19 -203.99 -2.28 -17.25 16 22 C 0.19 4.63 13.03 180.76 2.36 6.99 16 23 N -0.35 -9.93 12.57 -61.24 -0.77 -10.70 16 24 H 0.07 2.25 7.63 -2.39 -0.02 2.23 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.03 1.29 3.22 -2.39 -0.01 1.28 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 30 H 0.33 11.98 6.19 -89.69 -0.55 11.43 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.25 7.51 -2.39 -0.02 1.23 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 2.77 8.09 -2.38 -0.02 2.75 16 37 H 0.08 2.34 6.43 -2.39 -0.02 2.33 16 38 H 0.25 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.24 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -64.20 313.50 3.18 -61.02 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.39 Total: 24.57 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 7.74 Total: -9.69 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -6.62 Total: -121.11 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.67 Total: 45.22 kcal Total: -64.20 3.18 -61.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124257546.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.107 kcal (2) G-P(sol) polarization free energy of solvation -64.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds