Wall clock time and date at job start Mon Mar 30 2020 04:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46793 * 2 1 4 4 H 1.08996 * 109.47053 * 305.66290 * 3 2 1 5 5 C 1.50696 * 109.46836 * 185.66650 * 3 2 1 6 6 H 1.08005 * 120.00039 * 239.99944 * 5 3 2 7 7 C 1.37880 * 120.00295 * 59.99507 * 5 3 2 8 8 N 1.31513 * 119.99584 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00295 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46964 * 89.99923 * 9 7 5 11 11 H 1.48497 * 109.47532 * 210.00675 * 9 7 5 12 12 H 1.48505 * 109.47026 * 330.00473 * 9 7 5 13 13 N 1.46900 * 109.47305 * 65.66733 * 3 2 1 14 14 C 1.46903 * 110.99957 * 208.26806 * 13 3 2 15 15 H 1.09001 * 109.46997 * 32.55257 * 14 13 3 16 16 C 1.52999 * 109.46902 * 272.55560 * 14 13 3 17 17 C 1.52998 * 109.47329 * 152.55202 * 14 13 3 18 18 C 1.53007 * 109.47079 * 295.00203 * 17 14 13 19 19 N 1.46500 * 109.46755 * 179.97438 * 18 17 14 20 20 C 1.34423 * 126.82396 * 125.00054 * 19 18 17 21 21 N 1.30831 * 108.08381 * 179.97438 * 20 19 18 22 22 C 1.33245 * 109.82581 * 0.02562 * 21 20 19 23 23 N 1.30715 * 108.94413 * 0.26331 * 22 21 20 24 24 H 1.09003 * 109.46862 * 53.87323 * 1 2 3 25 25 H 1.09002 * 109.47321 * 173.86867 * 1 2 3 26 26 H 1.08997 * 109.47719 * 293.87069 * 1 2 3 27 27 H 1.08995 * 109.47617 * 239.99622 * 2 1 3 28 28 H 1.08996 * 109.46843 * 119.99363 * 2 1 3 29 29 H 0.97010 * 119.99463 * 179.97438 * 8 7 5 30 30 H 1.00898 * 110.99715 * 332.21805 * 13 3 2 31 31 H 1.09001 * 109.47047 * 299.99666 * 16 14 13 32 32 H 1.08997 * 109.47201 * 60.00187 * 16 14 13 33 33 H 1.09003 * 109.47015 * 180.02562 * 16 14 13 34 34 H 1.09000 * 109.47442 * 174.99990 * 17 14 13 35 35 H 1.09006 * 109.46691 * 54.99713 * 17 14 13 36 36 H 1.09000 * 109.47126 * 60.00170 * 18 17 14 37 37 H 1.08993 * 109.46818 * 299.99461 * 18 17 14 38 38 H 1.08008 * 125.96155 * 359.97438 * 20 19 18 39 39 H 1.07995 * 125.52996 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5961 1.9848 -0.8349 5 6 3.5403 1.4449 -0.1403 6 1 4.1542 1.8865 0.6309 7 6 4.1296 0.8832 -1.2531 8 7 3.3822 0.3459 -2.1923 9 14 5.9895 0.8867 -1.4273 10 1 6.5462 -0.3470 -0.8164 11 1 6.3518 0.9335 -2.8666 12 1 6.5491 2.0767 -0.7372 13 7 1.6651 2.0945 1.2619 14 6 1.5088 3.5438 1.0797 15 1 1.1369 3.7456 0.0751 16 6 2.8626 4.2306 1.2698 17 6 0.5141 4.0830 2.1096 18 6 -0.8703 3.4895 1.8409 19 7 -1.8225 4.0054 2.8275 20 6 -2.9831 4.6348 2.5746 21 7 -3.5398 4.9356 3.7197 22 6 -2.7676 4.5168 4.7216 23 7 -1.7014 3.9461 4.2255 24 1 -0.3633 0.6059 -0.8301 25 1 -0.3634 -1.0218 -0.1098 26 1 -0.3634 0.4158 0.9397 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.7968 -0.0490 -2.9754 30 1 0.8259 1.6856 1.6448 31 1 3.2345 4.0288 2.2743 32 1 3.5712 3.8465 0.5360 33 1 2.7466 5.3060 1.1350 34 1 0.4649 5.1692 2.0332 35 1 0.8411 3.8036 3.1112 36 1 -0.8211 2.4033 1.9174 37 1 -1.1972 3.7689 0.8394 38 1 -3.3858 4.8540 1.5967 39 1 -2.9853 4.6335 5.7729 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124257708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:01 Heat of formation + Delta-G solvation = 79.997063 kcal Electronic energy + Delta-G solvation = -18867.580830 eV Core-core repulsion = 16039.895115 eV Total energy + Delta-G solvation = -2827.685715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.07045 -37.66631 -34.96750 -33.17429 -31.71712 -31.24250 -29.50202 -28.26435 -26.37157 -24.17449 -22.85310 -22.03367 -21.49459 -19.81880 -19.64501 -17.34597 -16.38843 -16.01073 -15.13447 -15.08896 -14.60778 -14.36281 -14.10079 -13.62181 -13.48016 -12.75523 -12.61227 -12.26769 -12.07582 -11.91681 -11.32866 -11.20031 -11.12418 -10.96927 -10.89304 -10.69729 -10.47531 -10.06072 -9.95500 -9.83517 -9.72618 -9.60385 -9.51561 -9.07294 -8.36326 -7.31189 -5.99680 -4.02665 1.60516 2.27751 2.91118 3.30615 3.37496 3.40910 4.24427 4.37820 4.42226 4.79474 4.88489 5.05545 5.17280 5.25439 5.31084 5.43286 5.84289 5.89715 6.04677 6.06786 6.17143 6.20603 6.28550 6.31611 6.37805 6.43074 6.71505 6.75066 6.75467 6.99496 7.05787 7.14918 7.43103 7.72729 7.90194 8.02293 8.26469 8.35988 8.69709 9.04926 9.61956 11.05742 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036149 B = 0.004750 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.394600 B = 5892.707961 C = 6368.808397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.489 4.489 6 H 0.065 0.935 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.098 3.902 15 H 0.038 0.962 16 C -0.137 4.137 17 C -0.132 4.132 18 C 0.122 3.878 19 N -0.369 5.369 20 C 0.248 3.752 21 N -0.553 5.553 22 C 0.188 3.812 23 N -0.312 5.312 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.259 0.741 30 H 0.315 0.685 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.217 0.783 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.911 6.716 6.088 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.528 4.528 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.317 5.317 14 C -0.013 4.013 15 H 0.056 0.944 16 C -0.195 4.195 17 C -0.171 4.171 18 C 0.001 3.999 19 N -0.160 5.160 20 C -0.049 4.049 21 N -0.281 5.281 22 C -0.114 4.114 23 N -0.140 5.140 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.233 0.767 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.914 6.498 6.536 12.822 hybrid contribution 0.108 -0.084 -0.954 0.964 sum -8.807 6.414 5.581 12.241 Atomic orbital electron populations 1.21900 0.99782 0.99901 0.99134 1.21824 0.91070 1.00667 1.03224 1.19255 0.95720 0.89810 0.84001 0.97867 1.21262 0.91234 1.36167 1.04146 0.91695 1.24965 0.97975 0.95710 0.95962 1.69867 1.34632 1.39638 1.09596 0.86579 0.85943 0.78432 0.76923 1.20821 1.21501 1.19969 1.60805 1.37995 1.00960 1.31920 1.21358 0.94385 0.90359 0.95177 0.94378 1.21826 0.97628 0.97090 1.02959 1.22142 0.92136 1.00341 1.02453 1.22117 0.88746 1.00367 0.88702 1.50672 1.17378 1.42607 1.05308 1.26054 0.85349 0.93531 0.99961 1.70515 1.32721 1.27330 0.97531 1.25987 0.88748 0.96203 1.00501 1.78086 1.23438 1.24900 0.87579 0.93845 0.94274 0.95010 0.88122 0.94025 0.93131 0.86563 0.92996 0.90093 0.94561 0.91478 0.89764 0.88931 0.88150 0.76714 0.76927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.65 37.16 0.36 -2.34 16 2 C -0.13 -2.90 5.34 -26.73 -0.14 -3.04 16 3 C 0.22 5.09 2.03 -68.86 -0.14 4.95 16 4 H 0.00 0.10 7.34 -51.93 -0.38 -0.28 16 5 C -0.49 -12.79 7.43 -34.44 -0.26 -13.04 16 6 H 0.06 1.73 6.90 -52.48 -0.36 1.37 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -24.67 11.29 55.43 0.63 -24.04 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -13.31 6.16 -100.95 -0.62 -13.93 16 14 C 0.10 1.65 2.65 -67.71 -0.18 1.47 16 15 H 0.04 0.67 7.35 -51.93 -0.38 0.29 16 16 C -0.14 -2.39 9.10 37.16 0.34 -2.05 16 17 C -0.13 -1.80 5.00 -26.73 -0.13 -1.93 16 18 C 0.12 1.45 6.39 -4.04 -0.03 1.43 16 19 N -0.37 -4.59 3.69 -62.63 -0.23 -4.83 16 20 C 0.25 2.69 12.63 -90.66 -1.14 1.55 16 21 N -0.55 -6.99 11.19 -15.83 -0.18 -7.16 16 22 C 0.19 2.29 13.03 -91.81 -1.20 1.10 16 23 N -0.31 -4.37 12.56 29.29 0.37 -4.01 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.50 6.21 -51.93 -0.32 0.18 16 27 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.32 5.60 4.34 -39.29 -0.17 5.43 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.65 6.12 -51.93 -0.32 1.34 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.18 5.97 -51.93 -0.31 0.87 16 37 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.22 1.39 8.06 -52.48 -0.42 0.96 16 39 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -29.77 313.96 -8.86 -38.63 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.91 Total: 5.24 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.62 Total: -10.57 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.04 Total: -53.97 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.77 -8.86 -38.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124257708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.627 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds