Wall clock time and date at job start Mon Mar 30 2020 04:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46793 * 2 1 4 4 H 1.08996 * 109.47053 * 305.66290 * 3 2 1 5 5 C 1.50696 * 109.46836 * 185.66650 * 3 2 1 6 6 H 1.08005 * 120.00039 * 239.99944 * 5 3 2 7 7 C 1.37880 * 120.00295 * 59.99507 * 5 3 2 8 8 N 1.31513 * 119.99584 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00295 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46964 * 89.99923 * 9 7 5 11 11 H 1.48497 * 109.47532 * 210.00675 * 9 7 5 12 12 H 1.48505 * 109.47026 * 330.00473 * 9 7 5 13 13 N 1.46900 * 109.47305 * 65.66733 * 3 2 1 14 14 C 1.46903 * 110.99957 * 208.26806 * 13 3 2 15 15 H 1.09001 * 109.46997 * 32.55257 * 14 13 3 16 16 C 1.52999 * 109.46902 * 272.55560 * 14 13 3 17 17 C 1.52998 * 109.47329 * 152.55202 * 14 13 3 18 18 C 1.53007 * 109.47079 * 295.00203 * 17 14 13 19 19 N 1.46500 * 109.46755 * 179.97438 * 18 17 14 20 20 C 1.34423 * 126.82396 * 125.00054 * 19 18 17 21 21 N 1.30831 * 108.08381 * 179.97438 * 20 19 18 22 22 C 1.33245 * 109.82581 * 0.02562 * 21 20 19 23 23 N 1.30715 * 108.94413 * 0.26331 * 22 21 20 24 24 H 1.09003 * 109.46862 * 53.87323 * 1 2 3 25 25 H 1.09002 * 109.47321 * 173.86867 * 1 2 3 26 26 H 1.08997 * 109.47719 * 293.87069 * 1 2 3 27 27 H 1.08995 * 109.47617 * 239.99622 * 2 1 3 28 28 H 1.08996 * 109.46843 * 119.99363 * 2 1 3 29 29 H 0.97010 * 119.99463 * 179.97438 * 8 7 5 30 30 H 1.00898 * 110.99715 * 332.21805 * 13 3 2 31 31 H 1.09001 * 109.47047 * 299.99666 * 16 14 13 32 32 H 1.08997 * 109.47201 * 60.00187 * 16 14 13 33 33 H 1.09003 * 109.47015 * 180.02562 * 16 14 13 34 34 H 1.09000 * 109.47442 * 174.99990 * 17 14 13 35 35 H 1.09006 * 109.46691 * 54.99713 * 17 14 13 36 36 H 1.09000 * 109.47126 * 60.00170 * 18 17 14 37 37 H 1.08993 * 109.46818 * 299.99461 * 18 17 14 38 38 H 1.08008 * 125.96155 * 359.97438 * 20 19 18 39 39 H 1.07995 * 125.52996 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5961 1.9848 -0.8349 5 6 3.5403 1.4449 -0.1403 6 1 4.1542 1.8865 0.6309 7 6 4.1296 0.8832 -1.2531 8 7 3.3822 0.3459 -2.1923 9 14 5.9895 0.8867 -1.4273 10 1 6.5462 -0.3470 -0.8164 11 1 6.3518 0.9335 -2.8666 12 1 6.5491 2.0767 -0.7372 13 7 1.6651 2.0945 1.2619 14 6 1.5088 3.5438 1.0797 15 1 1.1369 3.7456 0.0751 16 6 2.8626 4.2306 1.2698 17 6 0.5141 4.0830 2.1096 18 6 -0.8703 3.4895 1.8409 19 7 -1.8225 4.0054 2.8275 20 6 -2.9831 4.6348 2.5746 21 7 -3.5398 4.9356 3.7197 22 6 -2.7676 4.5168 4.7216 23 7 -1.7014 3.9461 4.2255 24 1 -0.3633 0.6059 -0.8301 25 1 -0.3634 -1.0218 -0.1098 26 1 -0.3634 0.4158 0.9397 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.7968 -0.0490 -2.9754 30 1 0.8259 1.6856 1.6448 31 1 3.2345 4.0288 2.2743 32 1 3.5712 3.8465 0.5360 33 1 2.7466 5.3060 1.1350 34 1 0.4649 5.1692 2.0332 35 1 0.8411 3.8036 3.1112 36 1 -0.8211 2.4033 1.9174 37 1 -1.1972 3.7689 0.8394 38 1 -3.3858 4.8540 1.5967 39 1 -2.9853 4.6335 5.7729 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124257708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:00 Heat of formation + Delta-G solvation = 63.109078 kcal Electronic energy + Delta-G solvation = -18868.313148 eV Core-core repulsion = 16039.895115 eV Total energy + Delta-G solvation = -2828.418032 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.94809 -39.13382 -36.36243 -34.53714 -33.54212 -32.14021 -30.83256 -29.58697 -28.22072 -25.27168 -24.62173 -22.88851 -22.47424 -21.42723 -21.13337 -18.38713 -18.21504 -17.12695 -16.68687 -16.30145 -16.01826 -15.57841 -15.16833 -15.11683 -14.71266 -14.37715 -13.96474 -13.68703 -13.41813 -13.12621 -12.96917 -12.84107 -12.68141 -12.51236 -12.45341 -12.13117 -11.95727 -11.74201 -11.49776 -11.24697 -10.95920 -10.91068 -10.76062 -10.56278 -10.37158 -8.96356 -8.02461 -6.11386 0.74543 1.41102 1.41742 1.44166 1.52694 2.04673 2.46459 3.22884 3.46497 3.55322 3.62441 3.84976 3.97981 4.19828 4.21591 4.37881 4.53425 4.55631 4.56696 4.71853 4.74150 4.88642 5.02261 5.07037 5.12273 5.25384 5.29495 5.33068 5.41202 5.53039 5.56912 5.67237 5.81167 5.93199 5.95326 6.42492 6.60429 7.01626 7.04530 7.15414 7.56624 9.00392 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036149 B = 0.004750 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.394600 B = 5892.707961 C = 6368.808397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.228 3.772 4 H -0.021 1.021 5 C -0.500 4.500 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.946 3.054 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.687 5.687 14 C 0.099 3.901 15 H 0.035 0.965 16 C -0.134 4.134 17 C -0.114 4.114 18 C 0.126 3.874 19 N -0.378 5.378 20 C 0.257 3.743 21 N -0.577 5.577 22 C 0.189 3.811 23 N -0.352 5.352 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.031 0.969 29 H 0.258 0.742 30 H 0.327 0.673 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.257 0.743 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 7.600 6.455 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.120 3.880 4 H -0.004 1.004 5 C -0.539 4.539 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.773 3.227 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.322 5.322 14 C -0.012 4.012 15 H 0.053 0.947 16 C -0.192 4.192 17 C -0.153 4.153 18 C 0.005 3.995 19 N -0.168 5.168 20 C -0.039 4.039 21 N -0.305 5.305 22 C -0.114 4.114 23 N -0.180 5.180 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.273 0.727 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.172 7.388 6.920 14.350 hybrid contribution 0.474 -0.311 -1.034 1.179 sum -9.698 7.077 5.886 13.371 Atomic orbital electron populations 1.21755 0.96187 1.01147 1.00465 1.21658 0.94330 0.99494 1.01033 1.18987 0.94014 0.90325 0.84661 1.00368 1.21539 0.93010 1.35597 1.03741 0.92893 1.25594 1.01485 0.95738 0.95949 1.69985 1.35841 1.40347 1.09894 0.85737 0.81839 0.78285 0.76808 1.20731 1.21216 1.19701 1.60648 1.38997 1.02554 1.29963 1.21352 0.94999 0.88669 0.96139 0.94686 1.21769 0.97199 0.98771 1.01476 1.21883 0.92354 1.00970 1.00101 1.22067 0.87826 0.99668 0.89971 1.50639 1.18003 1.43325 1.04831 1.26902 0.84321 0.91574 1.01124 1.70565 1.33388 1.28308 0.98280 1.26574 0.88042 0.94998 1.01748 1.78042 1.24773 1.26478 0.88720 0.93696 0.92850 0.92673 0.91414 0.95025 0.93309 0.85300 0.93389 0.93588 0.91856 0.90139 0.91434 0.89880 0.85282 0.72704 0.74409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.65 71.98 0.69 -4.06 16 2 C -0.13 -5.68 5.34 30.60 0.16 -5.52 16 3 C 0.23 10.68 2.03 44.17 0.09 10.77 16 4 H -0.02 -1.08 7.34 -2.39 -0.02 -1.10 16 5 C -0.50 -26.62 7.43 25.60 0.19 -26.43 16 6 H 0.05 2.89 6.90 -2.91 -0.02 2.87 16 7 C 0.01 0.55 5.29 84.66 0.45 0.99 16 8 N -0.92 -51.45 11.29 21.45 0.24 -51.21 16 9 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.69 -26.48 6.16 -473.31 -2.92 -29.40 16 14 C 0.10 3.23 2.65 44.91 0.12 3.35 16 15 H 0.04 1.19 7.35 -2.39 -0.02 1.17 16 16 C -0.13 -4.62 9.10 71.98 0.66 -3.96 16 17 C -0.11 -2.90 5.00 30.60 0.15 -2.75 16 18 C 0.13 2.67 6.39 86.38 0.55 3.22 16 19 N -0.38 -8.46 3.69 -352.06 -1.30 -9.76 16 20 C 0.26 4.78 12.63 180.36 2.28 7.06 16 21 N -0.58 -13.21 11.19 -204.00 -2.28 -15.49 16 22 C 0.19 4.25 13.03 180.76 2.36 6.61 16 23 N -0.35 -9.31 12.56 -61.24 -0.77 -10.08 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.63 6.21 -2.39 -0.01 1.61 16 27 H 0.07 3.52 5.94 -2.39 -0.01 3.50 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 30 H 0.33 11.22 4.34 -89.70 -0.39 10.83 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.90 6.12 -2.39 -0.01 1.88 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.08 1.92 5.97 -2.39 -0.01 1.91 16 37 H 0.13 1.99 8.09 -2.39 -0.02 1.97 16 38 H 0.26 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.24 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -65.17 313.96 3.34 -61.83 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.65 Total: 19.26 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 7.70 Total: -10.72 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -7.03 Total: -115.93 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.17 3.34 -61.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124257708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.937 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds