Wall clock time and date at job start Mon Mar 30 2020 04:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 N 1.46902 * 109.45620 * 178.61515 * 12 11 10 14 14 C 1.46903 * 110.99477 * 204.99438 * 13 12 11 15 15 C 1.53002 * 109.46790 * 179.97438 * 14 13 12 16 16 C 1.54264 * 110.03615 * 292.91046 * 15 14 13 17 17 C 1.54962 * 104.15909 * 217.13519 * 16 15 14 18 18 C 1.54890 * 102.78054 * 37.89114 * 17 16 15 19 19 C 1.53881 * 110.03042 * 175.68971 * 15 14 13 20 20 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 21 21 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 22 22 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.58939 * 6.60799 * 10 9 7 24 24 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 25 25 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 26 26 H 1.08998 * 109.49550 * 294.61371 * 11 10 9 27 27 H 1.08996 * 109.45993 * 58.63917 * 12 11 10 28 28 H 1.00894 * 111.00166 * 328.94614 * 13 12 11 29 29 H 1.09000 * 109.47576 * 299.99904 * 14 13 12 30 30 H 1.09003 * 109.47045 * 60.00356 * 14 13 12 31 31 H 1.08998 * 110.01596 * 54.30616 * 15 14 13 32 32 H 1.08997 * 110.48506 * 335.78740 * 16 15 14 33 33 H 1.09001 * 110.48260 * 98.42551 * 16 15 14 34 34 H 1.08998 * 110.72373 * 279.57419 * 17 16 15 35 35 H 1.09003 * 110.92284 * 156.30072 * 17 16 15 36 36 H 1.09000 * 110.48802 * 203.40814 * 18 17 16 37 37 H 1.08995 * 110.60165 * 80.81406 * 18 17 16 38 38 H 1.08996 * 110.03580 * 238.57341 * 19 15 14 39 39 H 1.08996 * 110.03154 * 0.02562 * 19 15 14 40 40 H 1.09004 * 109.49452 * 181.32235 * 20 12 11 41 41 H 1.08997 * 109.50129 * 301.38075 * 20 12 11 42 42 H 1.09000 * 109.47297 * 113.74148 * 21 9 7 43 43 H 1.09005 * 109.70555 * 353.46012 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 7 1.0329 -5.6583 2.9227 14 6 -0.2376 -6.2180 3.4027 15 6 0.0368 -7.2038 4.5402 16 6 0.7879 -8.4383 4.0000 17 6 0.1963 -9.6237 4.8038 18 6 -1.3014 -9.2458 4.9194 19 6 -1.2909 -7.7168 5.1249 20 6 0.4931 -3.3254 2.4085 21 6 0.2252 -2.3429 1.2642 22 1 -0.4849 0.8401 0.0004 23 1 2.7375 -3.5126 -0.7655 24 1 1.0447 -4.0592 -0.8567 25 1 2.3025 -5.6087 0.5645 26 1 2.8993 -4.2592 1.5611 27 1 -0.0311 -5.0433 1.2189 28 1 1.6670 -6.3906 2.6405 29 1 -0.8756 -5.4122 3.7658 30 1 -0.7379 -6.7372 2.5852 31 1 0.6256 -6.7199 5.3194 32 1 0.5954 -8.5659 2.9348 33 1 1.8578 -8.3457 4.1869 34 1 0.6556 -9.6883 5.7902 35 1 0.3173 -10.5611 4.2609 36 1 -1.7552 -9.7428 5.7768 37 1 -1.8338 -9.5040 4.0041 38 1 -1.3460 -7.4826 6.1880 39 1 -2.1307 -7.2638 4.5981 40 1 -0.3890 -3.3914 3.0454 41 1 1.3414 -2.9764 2.9972 42 1 -0.6770 -2.6412 0.7300 43 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133118879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:10 Heat of formation + Delta-G solvation = -5.177823 kcal Electronic energy + Delta-G solvation = -19120.139086 eV Core-core repulsion = 16392.300255 eV Total energy + Delta-G solvation = -2727.838831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.84967 -37.59761 -34.82261 -32.29013 -30.33242 -29.82052 -28.87806 -28.09646 -24.83637 -23.44999 -22.06672 -21.22386 -20.67239 -19.67425 -18.90937 -16.68268 -16.15444 -15.47120 -15.08910 -14.67853 -14.28898 -13.89662 -13.49943 -13.41779 -13.23982 -12.93431 -12.71508 -12.16982 -12.10387 -11.46798 -11.26401 -11.20949 -11.14196 -10.92609 -10.91066 -10.76421 -10.66386 -10.52774 -10.47062 -10.15976 -10.12451 -9.85888 -9.49428 -9.42494 -8.43647 -8.06131 -6.61782 -5.74261 -3.16275 3.40580 3.47433 3.50489 4.30987 4.50031 4.53927 4.56750 4.74073 5.23755 5.27916 5.31842 5.40649 5.47853 5.49966 5.51041 5.56695 5.58176 5.68464 5.75070 5.78116 5.89214 5.96087 5.96664 5.98012 6.15413 6.19706 6.20581 6.36052 6.39803 6.49715 6.67597 6.70598 6.81634 6.84305 7.04204 7.45572 7.47007 7.70434 7.75628 7.84763 8.50348 9.26428 9.90093 10.47323 11.34522 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.050107 B = 0.003949 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.670801 B = 7087.974571 C = 7335.854933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.148 3.852 11 C -0.133 4.133 12 C 0.096 3.904 13 N -0.688 5.688 14 C 0.067 3.933 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.124 4.124 21 C 0.171 3.829 22 H 0.253 0.747 23 H 0.054 0.946 24 H 0.015 0.985 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.332 0.668 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 -16.874 8.634 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.172 4.172 12 C -0.013 4.013 13 N -0.319 5.319 14 C -0.062 4.062 15 C -0.109 4.109 16 C -0.159 4.159 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.159 4.159 20 C -0.164 4.164 21 C 0.045 3.955 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.150 0.850 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.150 -16.218 9.103 18.634 hybrid contribution 0.096 0.250 -0.741 0.788 sum -1.055 -15.968 8.361 18.056 Atomic orbital electron populations 1.70038 1.05282 1.25413 1.54092 1.25038 0.95278 0.98387 1.00998 0.86308 0.79204 0.83685 0.77652 1.21455 1.21570 1.20468 1.19177 0.92487 0.84853 1.41561 0.91781 1.44045 1.35858 1.01456 1.50103 1.20848 0.97539 0.86936 0.92570 1.22206 0.97561 0.98809 0.98670 1.21475 0.96773 0.93189 0.89881 1.60637 1.12631 1.19635 1.38998 1.22091 0.91994 0.96457 0.95686 1.21806 0.96077 0.95184 0.97877 1.22456 0.99719 0.94258 0.99448 1.22500 0.95627 0.97946 1.00176 1.22355 0.96636 0.95936 1.01312 1.22184 0.97581 0.95343 1.00780 1.22182 1.00173 0.94486 0.99511 1.20794 0.88443 0.98241 0.88068 0.93703 0.92737 0.96763 0.93627 0.91538 0.94865 0.85032 0.91133 0.95770 0.90244 0.91944 0.91513 0.91659 0.91933 0.92011 0.91854 0.91856 0.91713 0.93782 0.92173 0.96809 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 11.20 55.49 0.62 -26.09 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -7.06 9.58 -15.06 -0.14 -7.20 16 8 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -15.28 3.00 -172.29 -0.52 -15.80 16 10 C 0.15 3.20 6.51 -3.71 -0.02 3.17 16 11 C -0.13 -2.39 5.36 -26.61 -0.14 -2.53 16 12 C 0.10 1.70 2.46 -67.67 -0.17 1.53 16 13 N -0.69 -10.23 6.31 -106.68 -0.67 -10.90 16 14 C 0.07 0.88 4.60 -3.82 -0.02 0.86 16 15 C -0.09 -0.98 3.15 -89.50 -0.28 -1.26 16 16 C -0.12 -1.17 5.54 -25.03 -0.14 -1.31 16 17 C -0.12 -1.05 6.91 -24.70 -0.17 -1.22 16 18 C -0.12 -1.06 6.83 -25.07 -0.17 -1.23 16 19 C -0.12 -1.15 6.46 -25.61 -0.17 -1.32 16 20 C -0.12 -2.52 5.59 -26.61 -0.15 -2.67 16 21 C 0.17 4.22 5.30 -3.69 -0.02 4.20 16 22 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 28 H 0.33 4.48 7.53 -39.30 -0.30 4.18 16 29 H 0.07 1.00 7.41 -51.93 -0.38 0.61 16 30 H 0.02 0.32 7.93 -51.93 -0.41 -0.09 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.63 7.77 -51.93 -0.40 0.22 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 40 H 0.04 0.84 7.42 -51.93 -0.39 0.45 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -29.24 326.02 -10.39 -39.63 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.03 Total: 0.28 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.68 Total: -9.02 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.57 Total: -52.79 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.24 -10.39 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133118879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.453 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds