Wall clock time and date at job start Mon Mar 30 2020 04:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 N 1.46902 * 109.45620 * 178.61515 * 12 11 10 14 14 C 1.46903 * 110.99477 * 204.99438 * 13 12 11 15 15 C 1.53002 * 109.46790 * 179.97438 * 14 13 12 16 16 C 1.54264 * 110.03615 * 292.91046 * 15 14 13 17 17 C 1.54962 * 104.15909 * 217.13519 * 16 15 14 18 18 C 1.54890 * 102.78054 * 37.89114 * 17 16 15 19 19 C 1.53881 * 110.03042 * 175.68971 * 15 14 13 20 20 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 21 21 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 22 22 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.58939 * 6.60799 * 10 9 7 24 24 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 25 25 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 26 26 H 1.08998 * 109.49550 * 294.61371 * 11 10 9 27 27 H 1.08996 * 109.45993 * 58.63917 * 12 11 10 28 28 H 1.00894 * 111.00166 * 328.94614 * 13 12 11 29 29 H 1.09000 * 109.47576 * 299.99904 * 14 13 12 30 30 H 1.09003 * 109.47045 * 60.00356 * 14 13 12 31 31 H 1.08998 * 110.01596 * 54.30616 * 15 14 13 32 32 H 1.08997 * 110.48506 * 335.78740 * 16 15 14 33 33 H 1.09001 * 110.48260 * 98.42551 * 16 15 14 34 34 H 1.08998 * 110.72373 * 279.57419 * 17 16 15 35 35 H 1.09003 * 110.92284 * 156.30072 * 17 16 15 36 36 H 1.09000 * 110.48802 * 203.40814 * 18 17 16 37 37 H 1.08995 * 110.60165 * 80.81406 * 18 17 16 38 38 H 1.08996 * 110.03580 * 238.57341 * 19 15 14 39 39 H 1.08996 * 110.03154 * 0.02562 * 19 15 14 40 40 H 1.09004 * 109.49452 * 181.32235 * 20 12 11 41 41 H 1.08997 * 109.50129 * 301.38075 * 20 12 11 42 42 H 1.09000 * 109.47297 * 113.74148 * 21 9 7 43 43 H 1.09005 * 109.70555 * 353.46012 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 7 1.0329 -5.6583 2.9227 14 6 -0.2376 -6.2180 3.4027 15 6 0.0368 -7.2038 4.5402 16 6 0.7879 -8.4383 4.0000 17 6 0.1963 -9.6237 4.8038 18 6 -1.3014 -9.2458 4.9194 19 6 -1.2909 -7.7168 5.1249 20 6 0.4931 -3.3254 2.4085 21 6 0.2252 -2.3429 1.2642 22 1 -0.4849 0.8401 0.0004 23 1 2.7375 -3.5126 -0.7655 24 1 1.0447 -4.0592 -0.8567 25 1 2.3025 -5.6087 0.5645 26 1 2.8993 -4.2592 1.5611 27 1 -0.0311 -5.0433 1.2189 28 1 1.6670 -6.3906 2.6405 29 1 -0.8756 -5.4122 3.7658 30 1 -0.7379 -6.7372 2.5852 31 1 0.6256 -6.7199 5.3194 32 1 0.5954 -8.5659 2.9348 33 1 1.8578 -8.3457 4.1869 34 1 0.6556 -9.6883 5.7902 35 1 0.3173 -10.5611 4.2609 36 1 -1.7552 -9.7428 5.7768 37 1 -1.8338 -9.5040 4.0041 38 1 -1.3460 -7.4826 6.1880 39 1 -2.1307 -7.2638 4.5981 40 1 -0.3890 -3.3914 3.0454 41 1 1.3414 -2.9764 2.9972 42 1 -0.6770 -2.6412 0.7300 43 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133118879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:10 Heat of formation + Delta-G solvation = -21.937576 kcal Electronic energy + Delta-G solvation = -19120.865844 eV Core-core repulsion = 16392.300255 eV Total energy + Delta-G solvation = -2728.565589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.97034 -38.94982 -36.36145 -34.04312 -31.90298 -31.54904 -29.73272 -29.28132 -26.61960 -24.75934 -23.77885 -22.78889 -21.43981 -20.87542 -20.27889 -18.68807 -17.13850 -16.88746 -16.38537 -15.97538 -15.72029 -15.37340 -15.30795 -14.86451 -14.38543 -14.21741 -14.05724 -13.67622 -13.41730 -13.13895 -12.94658 -12.63559 -12.54035 -12.07406 -12.03904 -11.94499 -11.89425 -11.86957 -11.77003 -11.48118 -11.47420 -11.34124 -11.20456 -11.03639 -10.55431 -9.32518 -8.69789 -7.88257 -5.33783 1.46158 1.48038 1.58133 2.51261 3.15104 3.30027 3.67956 3.73488 3.79517 3.91204 3.98901 4.12990 4.39765 4.43647 4.49755 4.54091 4.59720 4.64188 4.71128 4.75397 4.83030 4.86526 4.87477 4.96771 4.99091 5.08185 5.09774 5.11760 5.15869 5.20439 5.28297 5.38243 5.40620 5.50012 5.51300 5.56285 5.63933 5.74152 6.16427 6.38487 6.58724 7.13963 7.85169 8.37587 9.18734 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.050107 B = 0.003949 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.670801 B = 7087.974571 C = 7335.854933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.142 3.858 11 C -0.119 4.119 12 C 0.106 3.894 13 N -0.686 5.686 14 C 0.069 3.931 15 C -0.086 4.086 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.110 4.110 21 C 0.179 3.821 22 H 0.250 0.750 23 H 0.057 0.943 24 H 0.012 0.988 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.345 0.655 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.048 0.952 42 H -0.008 1.008 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -18.615 9.337 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.016 3.984 11 C -0.159 4.159 12 C -0.004 4.004 13 N -0.318 5.318 14 C -0.060 4.060 15 C -0.105 4.105 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.149 4.149 21 C 0.053 3.947 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.030 0.970 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.164 0.836 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.010 0.990 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.185 -18.001 9.809 20.501 hybrid contribution -0.219 0.752 -0.980 1.255 sum -0.404 -17.248 8.829 19.381 Atomic orbital electron populations 1.70194 1.06762 1.25866 1.55413 1.25835 0.96074 1.01628 1.01186 0.85259 0.78067 0.79370 0.77646 1.20947 1.21817 1.19516 1.19533 0.92860 0.86088 1.41067 0.91532 1.44319 1.35890 1.02472 1.50802 1.21027 0.97361 0.85940 0.94036 1.22032 0.97219 0.99502 0.97112 1.21219 0.96507 0.92304 0.90375 1.60498 1.13794 1.19977 1.37492 1.22117 0.90931 0.96500 0.96469 1.21752 0.96926 0.95086 0.96725 1.22445 0.99765 0.94127 0.99455 1.22498 0.95315 0.97773 1.00360 1.22360 0.96895 0.94989 1.01844 1.22191 0.96595 0.96236 1.00942 1.21938 1.00109 0.95184 0.97697 1.20563 0.87675 0.97494 0.88975 0.94110 0.92402 0.96994 0.89977 0.92169 0.95408 0.83577 0.92503 0.95566 0.91050 0.92157 0.91254 0.91153 0.90960 0.90871 0.91874 0.91326 0.92187 0.92758 0.93310 0.98984 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.89 11.20 21.65 0.24 -56.64 16 2 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 3 Si 0.97 45.81 29.59 68.60 2.03 47.84 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.27 -15.08 9.58 84.03 0.81 -14.27 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.61 -31.97 3.00 -699.00 -2.10 -34.07 16 10 C 0.14 6.05 6.51 86.37 0.56 6.61 16 11 C -0.12 -4.05 5.36 30.67 0.16 -3.89 16 12 C 0.11 3.60 2.46 44.94 0.11 3.71 16 13 N -0.69 -19.01 6.31 -491.41 -3.10 -22.11 16 14 C 0.07 1.70 4.60 86.30 0.40 2.10 16 15 C -0.09 -1.70 3.15 -10.07 -0.03 -1.73 16 16 C -0.12 -2.03 5.54 31.69 0.18 -1.85 16 17 C -0.12 -1.72 6.91 31.91 0.22 -1.50 16 18 C -0.12 -1.79 6.83 31.67 0.22 -1.57 16 19 C -0.12 -2.10 6.46 31.32 0.20 -1.89 16 20 C -0.11 -4.47 5.59 30.67 0.17 -4.30 16 21 C 0.18 9.12 5.30 86.35 0.46 9.58 16 22 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 23 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.08 2.23 8.10 -2.38 -0.02 2.21 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.03 1.00 7.80 -2.39 -0.02 0.98 16 28 H 0.34 8.29 7.53 -89.70 -0.68 7.62 16 29 H 0.06 1.56 7.41 -2.39 -0.02 1.54 16 30 H 0.03 0.65 7.93 -2.39 -0.02 0.63 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.05 7.77 -2.39 -0.02 1.03 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.09 7.67 -2.39 -0.02 1.07 16 40 H 0.05 2.07 7.42 -2.38 -0.02 2.06 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.05 3.01 6.07 -2.38 -0.01 3.00 16 Total: -1.00 -63.21 326.02 1.22 -61.99 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.28 Total: 14.58 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.87 Total: -11.58 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -4.96 Total: -112.83 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -63.21 1.22 -61.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133118879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.050 kcal (2) G-P(sol) polarization free energy of solvation -63.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds