Wall clock time and date at job start Mon Mar 30 2020 04:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48505 * 109.47159 * 269.99721 * 3 2 1 5 5 H 1.48494 * 109.47089 * 30.00122 * 3 2 1 6 6 H 1.48504 * 109.47049 * 150.00040 * 3 2 1 7 7 C 1.37878 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00472 * 359.97438 * 7 2 1 9 9 C 1.50710 * 119.99961 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46934 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46669 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.49264 * 110.65595 * 69.61914 * 12 11 10 14 14 C 1.52338 * 105.52638 * 119.30538 * 13 12 11 15 15 H 1.09001 * 109.87993 * 271.62198 * 14 13 12 16 16 C 1.51461 * 117.39676 * 145.15618 * 14 13 12 17 17 C 1.53835 * 107.05558 * 180.69824 * 16 14 13 18 18 C 1.52526 * 111.64602 * 57.21522 * 17 16 14 19 19 C 1.53804 * 111.63564 * 305.94461 * 18 17 16 20 20 H 1.09003 * 109.94780 * 176.90334 * 19 18 17 21 21 N 1.46901 * 109.94288 * 298.13961 * 19 18 17 22 22 C 1.51471 * 107.11524 * 57.58358 * 19 18 17 23 23 H 1.09003 * 111.25725 * 55.60958 * 22 19 18 24 24 C 1.49069 * 111.00209 * 190.00189 * 12 11 10 25 25 H 0.96996 * 120.00342 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46914 * 60.00147 * 9 7 2 27 27 H 1.08996 * 109.47014 * 300.00155 * 9 7 2 28 28 H 1.09000 * 109.47041 * 60.00420 * 10 9 7 29 29 H 1.09000 * 109.47123 * 300.00268 * 10 9 7 30 30 H 1.08999 * 109.47516 * 60.00552 * 11 10 9 31 31 H 1.09000 * 109.47608 * 300.00022 * 11 10 9 32 32 H 1.09004 * 110.53697 * 0.20806 * 13 12 11 33 33 H 1.08997 * 110.12341 * 238.19117 * 13 12 11 34 34 H 1.08995 * 109.93566 * 61.30734 * 16 14 13 35 35 H 1.09000 * 110.00476 * 300.12459 * 16 14 13 36 36 H 1.08998 * 109.04495 * 296.65648 * 17 16 14 37 37 H 1.08993 * 108.98443 * 177.73490 * 17 16 14 38 38 H 1.09003 * 109.04140 * 66.48009 * 18 17 16 39 39 H 1.09002 * 109.03809 * 185.41385 * 18 17 16 40 40 H 1.00902 * 111.00624 * 185.68420 * 21 19 18 41 41 H 1.00908 * 110.99908 * 309.63891 * 21 19 18 42 42 H 1.09001 * 110.63055 * 95.07232 * 24 12 11 43 43 H 1.09000 * 110.62921 * 332.04244 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0014 11 6 5.5515 -2.6365 0.0001 12 7 6.0412 -4.0215 0.0009 13 6 5.7571 -4.6811 -1.3076 14 6 7.1178 -5.0659 -1.8743 15 1 7.5225 -4.2403 -2.4597 16 6 7.2029 -6.3516 -2.6705 17 6 8.6687 -6.5150 -3.1081 18 6 9.6154 -6.5227 -1.9122 19 6 9.4193 -5.2812 -1.0258 20 1 10.0690 -5.3414 -0.1526 21 7 9.7206 -4.0652 -1.7929 22 6 7.9693 -5.2704 -0.5882 23 1 7.6992 -6.2026 -0.0920 24 6 7.5116 -4.0681 0.2414 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6808 -0.8905 28 1 3.6579 -3.1514 -0.8879 29 1 3.6585 -3.1494 0.8920 30 1 5.9156 -2.1216 0.8892 31 1 5.9141 -2.1238 -0.8908 32 1 5.2507 -3.9906 -1.9820 33 1 5.1482 -5.5720 -1.1541 34 1 6.5580 -6.2893 -3.5470 35 1 6.9043 -7.1956 -2.0488 36 1 8.9367 -5.6904 -3.7687 37 1 8.7739 -7.4541 -3.6512 38 1 9.4297 -7.4171 -1.3175 39 1 10.6438 -6.5431 -2.2730 40 1 9.6871 -3.2475 -1.2026 41 1 10.6144 -4.1412 -2.2549 42 1 7.7229 -4.2282 1.2987 43 1 7.9878 -3.1537 -0.1123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164404198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:37 Heat of formation + Delta-G solvation = -15.311505 kcal Electronic energy + Delta-G solvation = -19207.490727 eV Core-core repulsion = 16479.212467 eV Total energy + Delta-G solvation = -2728.278261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37268 -36.78775 -33.96290 -33.42936 -32.00604 -30.02442 -29.41056 -27.04876 -26.51031 -23.48465 -21.62368 -21.35575 -20.48446 -19.85716 -19.15491 -16.67172 -16.35842 -15.49176 -15.40200 -15.19608 -14.45526 -14.22357 -13.86958 -13.69346 -13.39347 -13.32160 -12.59679 -12.57210 -12.11259 -11.99736 -11.89292 -11.67681 -11.50440 -11.07138 -10.90669 -10.83156 -10.64892 -10.47792 -10.25894 -10.07491 -9.87218 -9.61073 -9.47859 -9.09961 -8.83265 -8.47910 -8.00686 -5.98287 -3.95479 3.34507 3.41468 3.45891 4.15304 4.20629 4.37502 4.50485 4.52814 4.74506 4.96329 5.06318 5.13617 5.30880 5.32934 5.35733 5.40365 5.50828 5.66600 5.67966 5.70486 5.75597 5.82510 5.85363 5.94592 6.01807 6.12212 6.14108 6.23272 6.25459 6.28710 6.58713 6.65411 6.68335 6.91464 6.98558 7.17650 7.21140 7.35702 7.47230 7.54851 7.87148 8.62035 9.07846 9.64650 11.15447 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.040525 B = 0.004032 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.769181 B = 6942.851776 C = 7184.863673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.095 4.095 11 C 0.048 3.952 12 N -0.525 5.525 13 C 0.046 3.954 14 C -0.107 4.107 15 H 0.093 0.907 16 C -0.102 4.102 17 C -0.109 4.109 18 C -0.111 4.111 19 C 0.104 3.896 20 H 0.035 0.965 21 N -0.840 5.840 22 C -0.097 4.097 23 H 0.082 0.918 24 C 0.049 3.951 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.008 0.992 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.341 0.659 41 H 0.338 0.662 42 H 0.072 0.928 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.334 -12.135 -4.001 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.133 4.133 11 C -0.079 4.079 12 N -0.249 5.249 13 C -0.082 4.082 14 C -0.127 4.127 15 H 0.111 0.889 16 C -0.140 4.140 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.008 4.008 20 H 0.053 0.947 21 N -0.371 5.371 22 C -0.117 4.117 23 H 0.101 0.899 24 C -0.079 4.079 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 21.254 -12.457 -4.000 24.958 hybrid contribution 1.560 1.519 0.035 2.178 sum 22.814 -10.939 -3.965 25.610 Atomic orbital electron populations 1.69916 1.06291 1.26766 1.51538 1.25040 0.94723 0.99139 0.94712 0.86770 0.80367 0.83673 0.78418 1.20382 1.21445 1.19054 1.21167 0.89571 0.94429 1.50283 0.91038 1.19559 0.97115 0.92486 0.95973 1.21442 0.91054 0.99272 1.01578 1.22453 0.98056 0.87599 0.99834 1.64638 1.12051 1.17474 1.30700 1.22712 0.96313 0.99400 0.89765 1.22038 0.95342 0.98949 0.96342 0.88874 1.21271 0.96065 0.97047 0.99662 1.21403 0.94589 1.01301 0.97318 1.21583 0.99191 0.96891 0.97185 1.20967 0.95543 0.90327 0.93936 0.94685 1.58713 1.38144 1.04370 1.35856 1.22019 0.94226 0.99054 0.96371 0.89932 1.22742 0.88868 0.96865 0.99444 0.92831 0.96743 0.97367 0.92960 0.92127 0.91655 0.95283 0.91959 0.90972 0.91963 0.92174 0.91477 0.92799 0.91808 0.92492 0.84576 0.84909 0.90996 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.01 5.18 -26.73 -0.14 -2.15 16 11 C 0.05 0.85 4.57 -3.82 -0.02 0.83 16 12 N -0.52 -8.07 5.25 -231.04 -1.21 -9.28 16 13 C 0.05 0.65 5.98 -2.85 -0.02 0.63 16 14 C -0.11 -1.24 2.21 -90.36 -0.20 -1.44 16 15 H 0.09 1.20 6.88 -51.93 -0.36 0.84 16 16 C -0.10 -1.02 5.70 -27.07 -0.15 -1.17 16 17 C -0.11 -0.93 5.63 -26.54 -0.15 -1.08 16 18 C -0.11 -0.86 5.44 -26.56 -0.14 -1.00 16 19 C 0.10 0.88 3.44 -68.07 -0.23 0.65 16 20 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 21 N -0.84 -6.75 7.41 -4.97 -0.04 -6.79 16 22 C -0.10 -1.03 2.34 -89.98 -0.21 -1.24 16 23 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 24 C 0.05 0.60 6.25 -2.58 -0.02 0.59 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 27 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 28 H 0.05 1.11 7.03 -51.93 -0.37 0.74 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.03 0.50 8.01 -51.93 -0.42 0.09 16 32 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16 33 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 36 H 0.07 0.62 8.00 -51.93 -0.42 0.21 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.34 2.70 7.77 -39.29 -0.31 2.40 16 41 H 0.34 2.17 8.93 -39.29 -0.35 1.82 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.56 6.50 -51.93 -0.34 0.22 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -31.09 321.05 -10.02 -41.11 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.89 Total: -0.04 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.82 Total: -19.59 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.48 Total: -43.93 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.09 -10.02 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164404198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.796 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds