Wall clock time and date at job start Mon Mar 30 2020 03:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00243 * 2 1 4 4 C 1.53000 * 109.46769 * 293.95721 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99770 * 4 3 2 6 6 C 1.47196 * 109.47160 * 294.99517 * 4 3 2 7 7 N 3.66493 * 112.02716 * 284.54164 * 2 1 3 8 8 C 1.53002 * 109.46776 * 174.99873 * 4 3 2 9 9 C 1.50701 * 109.46807 * 184.99822 * 8 4 3 10 10 H 1.07998 * 120.00496 * 359.97438 * 9 8 4 11 11 C 1.37879 * 119.99849 * 180.02562 * 9 8 4 12 12 N 1.31514 * 119.99832 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00049 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46944 * 59.99994 * 13 11 9 15 15 H 1.48494 * 109.47003 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47091 * 300.00102 * 13 11 9 17 17 C 1.46906 * 111.00136 * 123.95472 * 2 1 3 18 18 C 1.53003 * 109.47132 * 66.04414 * 17 2 1 19 19 C 1.52994 * 115.54725 * 34.41967 * 18 17 2 20 20 O 1.42903 * 109.47584 * 325.57876 * 19 18 17 21 21 C 1.52995 * 117.49768 * 248.74842 * 18 17 2 22 22 C 1.52998 * 117.49584 * 180.09016 * 18 17 2 23 23 H 1.08999 * 109.47439 * 60.00146 * 1 2 3 24 24 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46808 * 299.99830 * 1 2 3 26 26 H 1.09002 * 109.47401 * 173.95428 * 3 2 1 27 27 H 1.09001 * 109.46874 * 53.95440 * 3 2 1 28 28 H 1.08993 * 109.47416 * 304.99509 * 8 4 3 29 29 H 1.09001 * 109.46966 * 65.00241 * 8 4 3 30 30 H 0.97010 * 119.99808 * 180.02562 * 12 11 9 31 31 H 1.09000 * 109.47257 * 186.04513 * 17 2 1 32 32 H 1.09006 * 109.46871 * 306.04551 * 17 2 1 33 33 H 1.09001 * 109.47300 * 85.58228 * 19 18 17 34 34 H 1.09006 * 109.47022 * 205.58547 * 19 18 17 35 35 H 0.96696 * 114.00282 * 180.02562 * 20 19 18 36 36 H 1.08998 * 117.49877 * 359.97438 * 21 18 17 37 37 H 1.09001 * 117.50247 * 145.02062 * 21 18 17 38 38 H 1.09007 * 117.49372 * 214.97815 * 22 18 17 39 39 H 1.08996 * 117.49976 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 1 0.5532 2.0057 -1.4690 6 6 2.3154 1.3777 -2.4303 7 7 2.8435 0.8530 -3.2886 8 6 2.0699 3.5224 -1.2689 9 6 1.6030 4.2287 -2.5155 10 1 1.0493 3.6869 -3.2680 11 6 1.8836 5.5665 -2.6960 12 7 2.5592 6.2260 -1.7804 13 14 1.3055 6.4420 -4.2416 14 1 -0.1755 6.3716 -4.3258 15 1 1.7310 7.8638 -4.1936 16 1 1.9008 5.7865 -5.4338 17 6 1.9954 -0.7660 1.1376 18 6 1.6314 -2.2427 0.9704 19 6 1.6115 -2.7583 -0.4699 20 8 1.1556 -1.7212 -1.3410 21 6 0.6126 -2.8340 1.9467 22 6 2.0916 -3.2116 2.0614 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 3.0797 1.3444 0.1082 27 1 1.5611 1.9273 0.8309 28 1 1.6330 4.0032 -0.3937 29 1 3.1569 3.5744 -1.2074 30 1 2.7564 7.1674 -1.9072 31 1 3.0797 -0.6611 1.1756 32 1 1.5611 -0.3872 2.0628 33 1 2.6171 -3.0616 -0.7613 34 1 0.9392 -3.6135 -0.5404 35 1 1.1172 -1.9783 -2.2723 36 1 0.2020 -2.1712 2.7083 37 1 -0.0717 -3.5908 1.5630 38 1 2.3797 -4.2166 1.7530 39 1 2.6540 -2.7971 2.8980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186804964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:27 Heat of formation + Delta-G solvation = 18.609616 kcal Electronic energy + Delta-G solvation = -18980.691410 eV Core-core repulsion = 16118.050985 eV Total energy + Delta-G solvation = -2862.640425 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.22059 -37.11462 -35.45911 -35.06837 -33.40553 -31.47335 -27.79391 -27.10814 -26.35681 -24.39876 -22.60092 -21.74490 -21.18834 -19.02532 -17.14825 -16.55913 -16.34910 -15.66830 -15.16912 -14.85648 -14.41593 -14.19985 -13.82665 -13.51886 -12.86469 -12.74757 -12.51866 -12.30643 -11.96447 -11.76581 -11.59687 -11.43170 -11.20630 -11.05746 -10.93985 -10.71240 -10.62890 -10.51461 -10.38660 -10.17555 -9.98444 -9.42211 -9.36855 -9.14025 -8.39664 -7.67387 -6.03934 -4.06578 3.34793 3.38705 3.42601 3.50698 3.91060 4.02083 4.16209 4.30040 4.46148 4.71498 4.82834 5.06345 5.13103 5.26794 5.34205 5.41379 5.44380 5.50732 5.58519 5.68099 5.69792 5.81903 5.87345 5.92997 6.03652 6.06801 6.08483 6.20175 6.43050 6.57468 6.66050 7.47355 7.51655 7.54895 7.62662 7.91808 8.00742 8.30691 8.76658 8.98388 9.58333 11.07052 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.004699 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.763298 B = 5956.796399 C = 6221.924312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.502 5.502 3 C 0.059 3.941 4 C 0.013 3.987 5 H 0.098 0.902 6 C 0.266 3.734 7 N -0.487 5.487 8 C 0.031 3.969 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.098 3.902 18 C -0.114 4.114 19 C 0.121 3.879 20 O -0.512 6.512 21 C -0.176 4.176 22 C -0.171 4.171 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.006 0.994 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.024 0.976 30 H 0.262 0.738 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.030 0.970 35 H 0.353 0.647 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -16.782 8.866 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.225 5.225 3 C -0.070 4.070 4 C -0.009 4.009 5 H 0.116 0.884 6 C -0.051 4.051 7 N -0.164 5.164 8 C -0.008 4.008 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.030 4.030 18 C -0.115 4.115 19 C 0.042 3.958 20 O -0.314 6.314 21 C -0.213 4.213 22 C -0.209 4.209 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.025 0.975 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.198 0.802 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.025 -17.289 7.744 19.184 hybrid contribution -0.688 0.798 -0.196 1.071 sum -3.713 -16.492 7.548 18.513 Atomic orbital electron populations 1.22259 0.87338 1.01434 0.99242 1.61896 1.08063 1.12022 1.40564 1.22261 1.00372 0.88026 0.96314 1.19173 0.99142 0.96293 0.86243 0.88378 1.28736 0.92448 0.90626 0.93268 1.80928 1.10878 1.12668 1.11943 1.19171 0.97578 0.85771 0.98290 1.21122 1.35838 0.94790 1.04441 0.92587 1.24951 0.94988 0.97569 0.96461 1.69937 1.39536 1.09610 1.34111 0.86666 0.79224 0.78524 0.83725 1.20091 1.21246 1.20232 1.21501 0.99674 0.89989 0.91845 1.21511 1.03925 0.94801 0.91243 1.21299 0.97031 0.89200 0.88302 1.87256 1.88647 1.36534 1.18936 1.23197 0.92146 1.03469 1.02464 1.23011 0.97624 0.99664 1.00559 0.91595 0.91171 0.97531 0.90889 0.93683 0.94661 0.95732 0.92825 0.90978 0.95264 0.94317 0.95145 0.80206 0.88870 0.88978 0.88816 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 7.75 60.06 0.47 1.07 16 2 N -0.50 -7.18 2.24 -242.91 -0.54 -7.72 16 3 C 0.06 0.95 4.32 -3.82 -0.02 0.93 16 4 C 0.01 0.26 2.13 -93.41 -0.20 0.06 16 5 H 0.10 1.83 6.33 -51.93 -0.33 1.50 16 6 C 0.27 5.70 13.67 -20.76 -0.28 5.41 16 7 N -0.49 -11.11 18.54 42.16 0.78 -10.33 16 8 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 9 C -0.52 -14.25 8.60 -34.44 -0.30 -14.55 16 10 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 13 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.10 1.21 5.09 -3.82 -0.02 1.19 16 18 C -0.11 -1.21 1.55 -154.51 -0.24 -1.45 16 19 C 0.12 1.32 7.04 37.15 0.26 1.58 16 20 O -0.51 -6.58 8.11 -35.23 -0.29 -6.86 16 21 C -0.18 -1.58 9.67 -26.70 -0.26 -1.84 16 22 C -0.17 -1.47 9.97 -26.70 -0.27 -1.74 16 23 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 24 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 25 H 0.01 0.08 8.14 -51.93 -0.42 -0.34 16 26 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 27 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 32 H 0.03 0.35 7.88 -51.93 -0.41 -0.06 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.03 0.29 7.90 -51.93 -0.41 -0.12 16 35 H 0.35 3.91 9.12 45.56 0.42 4.33 16 36 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -30.51 321.11 -6.09 -36.60 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.52 Total: -0.77 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.07 Total: -7.07 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.97 Total: -43.31 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.29 Total: -6.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.51 -6.09 -36.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186804964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.207 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds