Wall clock time and date at job start Mon Mar 30 2020 03:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99792 * 2 1 4 4 C 1.53007 * 109.47183 * 199.83395 * 3 2 1 5 5 H 1.09004 * 109.46821 * 305.14924 * 4 3 2 6 6 C 1.47201 * 109.46834 * 65.14638 * 4 3 2 7 7 N 3.66719 * 123.91718 * 281.39431 * 2 1 3 8 8 C 1.52991 * 109.47210 * 185.14775 * 4 3 2 9 9 C 1.50705 * 109.47322 * 175.00074 * 8 4 3 10 10 H 1.07998 * 119.99280 * 359.97438 * 9 8 4 11 11 C 1.37877 * 120.00063 * 180.02562 * 9 8 4 12 12 N 1.31513 * 119.99716 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00124 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46844 * 90.00002 * 13 11 9 15 15 H 1.48496 * 109.47124 * 209.99858 * 13 11 9 16 16 H 1.48495 * 109.47360 * 330.00359 * 13 11 9 17 17 C 1.46900 * 111.00077 * 123.94876 * 2 1 3 18 18 C 1.52998 * 109.46810 * 66.04914 * 17 2 1 19 19 H 1.09001 * 110.42386 * 304.14049 * 18 17 2 20 20 C 1.54483 * 110.37547 * 181.83201 * 18 17 2 21 21 C 1.54507 * 104.06645 * 217.19256 * 20 18 17 22 22 C 1.54481 * 104.06258 * 359.97438 * 21 20 18 23 23 O 1.44429 * 110.37270 * 66.45527 * 18 17 2 24 24 H 1.08999 * 109.47327 * 290.80863 * 1 2 3 25 25 H 1.08992 * 109.47234 * 50.81235 * 1 2 3 26 26 H 1.08996 * 109.46775 * 170.81183 * 1 2 3 27 27 H 1.08996 * 109.47148 * 319.83494 * 3 2 1 28 28 H 1.09002 * 109.47355 * 79.83574 * 3 2 1 29 29 H 1.08997 * 109.47572 * 295.00308 * 8 4 3 30 30 H 1.09005 * 109.47424 * 55.00153 * 8 4 3 31 31 H 0.96998 * 120.00395 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.47238 * 306.04856 * 17 2 1 33 33 H 1.08998 * 109.47234 * 186.04313 * 17 2 1 34 34 H 1.09007 * 110.50921 * 335.83841 * 20 18 17 35 35 H 1.09001 * 110.51318 * 98.40368 * 20 18 17 36 36 H 1.09000 * 110.51078 * 118.64721 * 21 20 18 37 37 H 1.08999 * 110.50700 * 241.35525 * 21 20 18 38 38 H 1.08997 * 110.37591 * 265.14959 * 22 21 20 39 39 H 1.09000 * 110.36976 * 142.81133 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4450 1.3614 -0.4895 5 1 4.0287 0.6695 0.1179 6 6 3.4846 0.9323 -1.8970 7 7 3.5152 0.6012 -2.9832 8 6 4.0340 2.7682 -0.3684 9 6 5.4957 2.7341 -0.7337 10 1 5.9582 1.8020 -1.0229 11 6 6.2425 3.8925 -0.6978 12 7 7.5179 3.8627 -1.0171 13 14 5.4424 5.5044 -0.1969 14 1 5.5583 5.6786 1.2734 15 1 6.1247 6.6302 -0.8840 16 1 4.0083 5.4858 -0.5816 17 6 1.9954 -0.7659 1.1376 18 6 1.6315 -2.2425 0.9704 19 1 0.5536 -2.3581 0.8572 20 6 2.1359 -3.0611 2.1796 21 6 2.5968 -4.3997 1.5608 22 6 2.3157 -4.2319 0.0511 23 8 2.3198 -2.8042 -0.1683 24 1 -0.3634 0.3651 0.9606 25 1 -0.3633 0.6493 -0.7965 26 1 -0.3633 -1.0145 -0.1641 27 1 1.3924 1.9921 -0.6628 28 1 1.9563 1.7757 1.0115 29 1 3.5065 3.4423 -1.0432 30 1 3.9239 3.1212 0.6570 31 1 8.0435 4.6776 -0.9915 32 1 1.5611 -0.3871 2.0628 33 1 3.0797 -0.6610 1.1756 34 1 2.9726 -2.5548 2.6612 35 1 1.3285 -3.2256 2.8931 36 1 3.6612 -4.5553 1.7366 37 1 2.0166 -5.2281 1.9672 38 1 1.3428 -4.6527 -0.2029 39 1 3.1009 -4.7079 -0.5362 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187820124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:49 Heat of formation + Delta-G solvation = -23.287053 kcal Electronic energy + Delta-G solvation = -18751.009585 eV Core-core repulsion = 15886.552384 eV Total energy + Delta-G solvation = -2864.457201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60487 -37.79068 -35.57963 -33.54591 -32.16821 -31.84956 -30.32077 -27.81320 -26.25969 -24.47364 -22.43918 -21.37160 -21.19173 -20.71386 -16.93679 -16.84887 -16.52653 -15.86562 -15.63192 -14.85526 -14.57406 -14.44905 -13.95292 -13.72040 -13.17838 -13.04664 -12.42815 -12.38047 -12.14578 -12.06556 -11.86956 -11.73403 -11.67423 -11.27524 -11.19786 -11.10537 -11.00321 -10.70300 -10.61491 -10.31236 -9.85538 -9.76160 -9.63314 -9.26408 -8.57748 -8.17625 -6.06337 -4.06445 3.28006 3.37021 3.38293 3.76705 3.85608 3.94312 4.04926 4.41778 4.48679 4.66128 4.79117 4.90866 4.97276 5.11693 5.19098 5.28549 5.30548 5.35957 5.46132 5.53954 5.60980 5.61982 5.70489 5.74106 5.80355 5.89042 5.91646 5.92396 6.03340 6.28046 6.39314 6.86475 6.96991 7.13191 7.15311 7.23271 7.68808 8.46405 8.70403 8.98585 9.53614 11.06946 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.005049 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.798936 B = 5543.827075 C = 5738.556091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.059 3.941 4 C 0.023 3.977 5 H 0.104 0.896 6 C 0.256 3.744 7 N -0.473 5.473 8 C -0.006 4.006 9 C -0.525 4.525 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.264 1.264 17 C 0.057 3.943 18 C 0.079 3.921 19 H 0.065 0.935 20 C -0.152 4.152 21 C -0.154 4.154 22 C 0.040 3.960 23 O -0.348 6.348 24 H 0.023 0.977 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.032 -12.066 9.981 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.069 4.069 4 C 0.001 3.999 5 H 0.121 0.879 6 C -0.061 4.061 7 N -0.150 5.150 8 C -0.045 4.045 9 C -0.563 4.563 10 H 0.093 0.907 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.704 3.296 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.071 4.071 18 C 0.021 3.979 19 H 0.083 0.917 20 C -0.190 4.190 21 C -0.192 4.192 22 C -0.037 4.037 23 O -0.266 6.266 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.577 -12.559 7.697 20.723 hybrid contribution -0.566 1.231 1.597 2.094 sum -15.143 -11.328 9.294 21.071 Atomic orbital electron populations 1.22413 0.87713 1.02131 1.00068 1.61893 1.07340 1.13981 1.42881 1.22291 0.95462 0.88544 1.00644 1.18925 0.95337 1.00855 0.84755 0.87868 1.28603 0.91433 0.91514 0.94528 1.80969 1.10115 1.10787 1.13090 1.19647 0.97480 0.89724 0.97639 1.21045 0.91980 0.96799 1.46488 0.90749 1.24990 0.94652 0.98897 0.94588 1.69909 1.06808 1.28464 1.48439 0.86822 0.80195 0.83656 0.78911 1.20111 1.21339 1.18865 1.22297 1.02078 0.91257 0.91499 1.23016 0.96175 0.93398 0.85299 0.91678 1.22986 1.01841 0.95943 0.98275 1.22926 1.02428 0.97651 0.96217 1.23394 1.01099 0.83910 0.95319 1.89362 1.77442 1.17437 1.42386 0.95800 0.91430 0.91631 0.90297 0.92781 0.95711 0.95081 0.92623 0.93315 0.89093 0.90242 0.90773 0.90587 0.90918 0.92790 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.25 60.06 0.56 0.83 16 2 N -0.54 -7.42 4.38 -242.92 -1.06 -8.48 16 3 C 0.06 0.87 4.36 -3.82 -0.02 0.85 16 4 C 0.02 0.44 2.27 -93.41 -0.21 0.23 16 5 H 0.10 1.90 6.67 -51.93 -0.35 1.55 16 6 C 0.26 5.68 13.67 -20.76 -0.28 5.39 16 7 N -0.47 -11.45 18.54 42.15 0.78 -10.67 16 8 C -0.01 -0.13 3.49 -27.88 -0.10 -0.23 16 9 C -0.53 -14.45 9.15 -34.44 -0.32 -14.77 16 10 H 0.07 2.26 7.84 -52.49 -0.41 1.85 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 13 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 17 C 0.06 0.68 4.39 -3.83 -0.02 0.67 16 18 C 0.08 0.90 3.19 -25.95 -0.08 0.82 16 19 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 20 C -0.15 -1.35 6.63 -25.16 -0.17 -1.52 16 21 C -0.15 -1.32 7.09 -25.16 -0.18 -1.50 16 22 C 0.04 0.42 7.63 37.93 0.29 0.71 16 23 O -0.35 -5.06 11.33 -35.23 -0.40 -5.46 16 24 H 0.02 0.22 8.07 -51.93 -0.42 -0.19 16 25 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 26 H 0.06 0.69 6.65 -51.93 -0.35 0.35 16 27 H 0.08 1.13 7.74 -51.93 -0.40 0.73 16 28 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 29 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 30 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.05 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.09 1.21 6.57 -51.93 -0.34 0.87 16 34 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 318.69 15.07 4.80 4.80 Total: -1.00 -33.18 318.69 -6.70 -39.88 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.30 Total: -2.97 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.62 Total: -6.61 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.49 Total: -45.84 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.40 Total: -5.46 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.18 -6.70 -39.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187820124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.597 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds