Wall clock time and date at job start Mon Mar 30 2020 03:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99792 * 2 1 4 4 C 1.53007 * 109.47183 * 199.83395 * 3 2 1 5 5 H 1.09004 * 109.46821 * 305.14924 * 4 3 2 6 6 C 1.47201 * 109.46834 * 65.14638 * 4 3 2 7 7 N 3.66719 * 123.91718 * 281.39431 * 2 1 3 8 8 C 1.52991 * 109.47210 * 185.14775 * 4 3 2 9 9 C 1.50705 * 109.47322 * 175.00074 * 8 4 3 10 10 H 1.07998 * 119.99280 * 359.97438 * 9 8 4 11 11 C 1.37877 * 120.00063 * 180.02562 * 9 8 4 12 12 N 1.31513 * 119.99716 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00124 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46844 * 90.00002 * 13 11 9 15 15 H 1.48496 * 109.47124 * 209.99858 * 13 11 9 16 16 H 1.48495 * 109.47360 * 330.00359 * 13 11 9 17 17 C 1.46900 * 111.00077 * 123.94876 * 2 1 3 18 18 C 1.52998 * 109.46810 * 66.04914 * 17 2 1 19 19 H 1.09001 * 110.42386 * 304.14049 * 18 17 2 20 20 C 1.54483 * 110.37547 * 181.83201 * 18 17 2 21 21 C 1.54507 * 104.06645 * 217.19256 * 20 18 17 22 22 C 1.54481 * 104.06258 * 359.97438 * 21 20 18 23 23 O 1.44429 * 110.37270 * 66.45527 * 18 17 2 24 24 H 1.08999 * 109.47327 * 290.80863 * 1 2 3 25 25 H 1.08992 * 109.47234 * 50.81235 * 1 2 3 26 26 H 1.08996 * 109.46775 * 170.81183 * 1 2 3 27 27 H 1.08996 * 109.47148 * 319.83494 * 3 2 1 28 28 H 1.09002 * 109.47355 * 79.83574 * 3 2 1 29 29 H 1.08997 * 109.47572 * 295.00308 * 8 4 3 30 30 H 1.09005 * 109.47424 * 55.00153 * 8 4 3 31 31 H 0.96998 * 120.00395 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.47238 * 306.04856 * 17 2 1 33 33 H 1.08998 * 109.47234 * 186.04313 * 17 2 1 34 34 H 1.09007 * 110.50921 * 335.83841 * 20 18 17 35 35 H 1.09001 * 110.51318 * 98.40368 * 20 18 17 36 36 H 1.09000 * 110.51078 * 118.64721 * 21 20 18 37 37 H 1.08999 * 110.50700 * 241.35525 * 21 20 18 38 38 H 1.08997 * 110.37591 * 265.14959 * 22 21 20 39 39 H 1.09000 * 110.36976 * 142.81133 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4450 1.3614 -0.4895 5 1 4.0287 0.6695 0.1179 6 6 3.4846 0.9323 -1.8970 7 7 3.5152 0.6012 -2.9832 8 6 4.0340 2.7682 -0.3684 9 6 5.4957 2.7341 -0.7337 10 1 5.9582 1.8020 -1.0229 11 6 6.2425 3.8925 -0.6978 12 7 7.5179 3.8627 -1.0171 13 14 5.4424 5.5044 -0.1969 14 1 5.5583 5.6786 1.2734 15 1 6.1247 6.6302 -0.8840 16 1 4.0083 5.4858 -0.5816 17 6 1.9954 -0.7659 1.1376 18 6 1.6315 -2.2425 0.9704 19 1 0.5536 -2.3581 0.8572 20 6 2.1359 -3.0611 2.1796 21 6 2.5968 -4.3997 1.5608 22 6 2.3157 -4.2319 0.0511 23 8 2.3198 -2.8042 -0.1683 24 1 -0.3634 0.3651 0.9606 25 1 -0.3633 0.6493 -0.7965 26 1 -0.3633 -1.0145 -0.1641 27 1 1.3924 1.9921 -0.6628 28 1 1.9563 1.7757 1.0115 29 1 3.5065 3.4423 -1.0432 30 1 3.9239 3.1212 0.6570 31 1 8.0435 4.6776 -0.9915 32 1 1.5611 -0.3871 2.0628 33 1 3.0797 -0.6610 1.1756 34 1 2.9726 -2.5548 2.6612 35 1 1.3285 -3.2256 2.8931 36 1 3.6612 -4.5553 1.7366 37 1 2.0166 -5.2281 1.9672 38 1 1.3428 -4.6527 -0.2029 39 1 3.1009 -4.7079 -0.5362 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187820124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:49 Heat of formation + Delta-G solvation = -46.603696 kcal Electronic energy + Delta-G solvation = -18752.020670 eV Core-core repulsion = 15886.552384 eV Total energy + Delta-G solvation = -2865.468286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48053 -39.01988 -37.10077 -35.42720 -33.74407 -32.93657 -31.24987 -29.35784 -27.19465 -25.78962 -23.42954 -23.22643 -22.03455 -21.60581 -18.89868 -18.34601 -17.46277 -16.87109 -16.56493 -16.27265 -15.77627 -15.63858 -15.32417 -14.76499 -14.53743 -14.46599 -14.18420 -13.84689 -13.36019 -13.20757 -13.08842 -12.90788 -12.73132 -12.61233 -12.53711 -12.35302 -12.11476 -11.92610 -11.79930 -11.60551 -11.51032 -11.35921 -11.20644 -10.71793 -10.58031 -9.11468 -8.23354 -6.29305 1.43066 1.46938 1.57430 2.09283 2.17714 2.42556 2.90394 3.12655 3.15920 3.37095 3.74433 3.86360 4.08274 4.10801 4.22396 4.27034 4.41423 4.49141 4.52999 4.65051 4.69519 4.74596 4.78165 4.84126 4.90149 4.92087 4.99145 5.01792 5.11865 5.18692 5.23921 5.26960 5.46286 5.64818 6.03578 6.14119 6.29390 6.30199 6.78210 6.95169 7.34967 8.94014 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.005049 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.798936 B = 5543.827075 C = 5738.556091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.564 5.564 3 C 0.070 3.930 4 C 0.027 3.973 5 H 0.104 0.896 6 C 0.266 3.734 7 N -0.520 5.520 8 C -0.002 4.002 9 C -0.532 4.532 10 H 0.024 0.976 11 C 0.002 3.998 12 N -0.956 5.956 13 Si 0.952 3.048 14 H -0.255 1.255 15 H -0.295 1.295 16 H -0.237 1.237 17 C 0.055 3.945 18 C 0.075 3.925 19 H 0.075 0.925 20 C -0.148 4.148 21 C -0.150 4.150 22 C 0.032 3.968 23 O -0.393 6.393 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.265 0.735 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.917 -11.386 12.469 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.288 5.288 3 C -0.059 4.059 4 C 0.005 3.995 5 H 0.122 0.878 6 C -0.050 4.050 7 N -0.198 5.198 8 C -0.041 4.041 9 C -0.570 4.570 10 H 0.042 0.958 11 C -0.194 4.194 12 N -0.596 5.596 13 Si 0.774 3.226 14 H -0.179 1.179 15 H -0.222 1.222 16 H -0.160 1.160 17 C -0.072 4.072 18 C 0.017 3.983 19 H 0.093 0.907 20 C -0.186 4.186 21 C -0.188 4.188 22 C -0.045 4.045 23 O -0.313 6.313 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.495 -11.909 10.201 23.494 hybrid contribution 0.394 0.892 0.772 1.243 sum -17.101 -11.018 10.973 23.113 Atomic orbital electron populations 1.22409 0.85858 1.02434 1.01254 1.61776 1.09124 1.13537 1.44401 1.22155 0.92042 0.89615 1.02103 1.19067 0.98710 0.98956 0.82766 0.87823 1.29420 0.89952 0.90438 0.95231 1.80954 1.11913 1.12199 1.14688 1.19589 0.93577 0.91708 0.99196 1.21395 0.95057 0.94886 1.45648 0.95791 1.26075 0.95065 1.03626 0.94655 1.70100 1.09043 1.29727 1.50775 0.85641 0.80194 0.77320 0.79420 1.17932 1.22168 1.15956 1.22355 1.00994 0.91742 0.92126 1.23184 0.96512 0.93181 0.85391 0.90688 1.22988 1.02510 0.95376 0.97701 1.22918 1.02666 0.98496 0.94673 1.23566 1.01662 0.82391 0.96880 1.89313 1.78199 1.19489 1.44292 0.93429 0.91713 0.91419 0.89761 0.89722 0.95346 0.91792 0.92648 0.90537 0.91106 0.90566 0.88293 0.90991 0.88585 0.91591 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.25 127.69 1.18 1.72 16 2 N -0.56 -14.30 4.38 -922.47 -4.04 -18.34 16 3 C 0.07 1.83 4.36 86.31 0.38 2.20 16 4 C 0.03 0.99 2.27 -12.60 -0.03 0.96 16 5 H 0.10 3.80 6.67 -2.38 -0.02 3.78 16 6 C 0.27 11.90 13.67 89.44 1.22 13.12 16 7 N -0.52 -25.85 18.54 20.01 0.37 -25.48 16 8 C 0.00 -0.07 3.49 29.85 0.10 0.03 16 9 C -0.53 -29.69 9.15 25.60 0.23 -29.46 16 10 H 0.02 1.53 7.84 -2.91 -0.02 1.50 16 11 C 0.00 0.12 5.47 84.65 0.46 0.59 16 12 N -0.96 -60.28 13.96 21.45 0.30 -59.98 16 13 Si 0.95 41.94 27.47 68.60 1.88 43.82 16 14 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 15 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 17 C 0.06 1.21 4.39 86.30 0.38 1.59 16 18 C 0.07 1.56 3.19 31.10 0.10 1.66 16 19 H 0.08 1.38 6.55 -2.39 -0.02 1.37 16 20 C -0.15 -2.27 6.63 31.61 0.21 -2.06 16 21 C -0.15 -2.31 7.09 31.61 0.22 -2.08 16 22 C 0.03 0.65 7.63 72.49 0.55 1.21 16 23 O -0.39 -11.39 11.33 -148.98 -1.69 -13.08 16 24 H 0.05 0.69 8.07 -2.39 -0.02 0.67 16 25 H 0.06 1.27 7.85 -2.39 -0.02 1.25 16 26 H 0.07 1.26 6.65 -2.39 -0.02 1.24 16 27 H 0.08 2.13 7.74 -2.39 -0.02 2.11 16 28 H 0.08 1.73 8.00 -2.39 -0.02 1.71 16 29 H 0.03 1.18 7.20 -2.39 -0.02 1.17 16 30 H 0.06 2.32 7.57 -2.38 -0.02 2.30 16 31 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.08 1.23 8.07 -2.39 -0.02 1.21 16 33 H 0.07 1.81 6.57 -2.39 -0.02 1.80 16 34 H 0.08 1.22 7.87 -2.38 -0.02 1.20 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -75.20 318.69 2.81 -72.39 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.96 Total: 11.18 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 5.02 Total: -10.52 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -3.37 Total: -103.80 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.69 Total: -13.08 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.82 kcal Total: -75.20 2.81 -72.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187820124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.788 kcal (2) G-P(sol) polarization free energy of solvation -75.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds