Wall clock time and date at job start Mon Mar 30 2020 03:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00220 * 2 1 4 4 C 1.52999 * 109.47421 * 160.26848 * 3 2 1 5 5 H 1.09010 * 109.46577 * 55.42291 * 4 3 2 6 6 C 1.47200 * 109.47358 * 295.42478 * 4 3 2 7 7 N 3.65886 * 124.14611 * 79.03587 * 2 1 3 8 8 C 1.52992 * 109.47271 * 175.41615 * 4 3 2 9 9 C 1.50697 * 109.47235 * 185.00251 * 8 4 3 10 10 H 1.07998 * 120.00180 * 0.02562 * 9 8 4 11 11 C 1.37884 * 120.00227 * 180.02562 * 9 8 4 12 12 N 1.31514 * 119.99638 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00210 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47201 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47390 * 119.99963 * 13 11 9 16 16 H 1.48497 * 109.47123 * 240.00082 * 13 11 9 17 17 C 1.46902 * 110.99958 * 236.04478 * 2 1 3 18 18 C 1.52989 * 109.47414 * 293.95635 * 17 2 1 19 19 C 1.53784 * 113.61639 * 175.00173 * 18 17 2 20 20 C 1.53778 * 87.08189 * 140.06427 * 19 18 17 21 21 O 1.42908 * 113.61183 * 219.93392 * 20 19 18 22 22 C 1.53779 * 87.17537 * 334.52377 * 20 19 18 23 23 H 1.08998 * 109.46918 * 189.50890 * 1 2 3 24 24 H 1.08999 * 109.46749 * 309.50507 * 1 2 3 25 25 H 1.09000 * 109.47173 * 69.50633 * 1 2 3 26 26 H 1.08995 * 109.47397 * 280.27847 * 3 2 1 27 27 H 1.09008 * 109.47004 * 40.27465 * 3 2 1 28 28 H 1.09000 * 109.47691 * 305.00810 * 8 4 3 29 29 H 1.09001 * 109.46819 * 65.00489 * 8 4 3 30 30 H 0.96997 * 119.99855 * 180.02562 * 12 11 9 31 31 H 1.08999 * 109.47013 * 173.94898 * 17 2 1 32 32 H 1.09004 * 109.46952 * 53.96027 * 17 2 1 33 33 H 1.09001 * 112.85105 * 43.79932 * 18 17 2 34 34 H 1.08996 * 113.61505 * 25.51084 * 19 18 17 35 35 H 1.09000 * 113.60937 * 254.61100 * 19 18 17 36 36 H 1.08995 * 113.61673 * 89.11613 * 20 19 18 37 37 H 0.96702 * 113.99635 * 178.47069 * 21 20 19 38 38 H 1.08999 * 113.61099 * 140.02203 * 22 20 19 39 39 H 1.09003 * 113.61724 * 270.92838 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4459 1.3610 0.4870 5 1 4.0308 0.6771 -0.1283 6 6 3.4893 0.9179 1.8900 7 7 3.5228 0.5759 2.9728 8 6 4.0303 2.7707 0.3790 9 6 5.4926 2.7375 0.7416 10 1 5.9587 1.8041 1.0207 11 6 6.2357 3.8987 0.7170 12 7 5.6680 5.0355 0.3776 13 14 8.0484 3.8574 1.1657 14 1 8.4420 2.4670 1.5083 15 1 8.8549 4.3306 0.0121 16 1 8.2894 4.7416 2.3341 17 6 1.9955 -0.7660 -1.1376 18 6 1.6315 -2.2425 -0.9704 19 6 2.0318 -3.1156 -2.1715 20 6 2.4494 -4.1885 -1.1521 21 8 3.6558 -4.8707 -1.5008 22 6 2.6576 -3.0437 -0.1467 23 1 -0.3633 -1.0135 0.1698 24 1 -0.3633 0.6538 0.7929 25 1 -0.3633 0.3598 -0.9626 26 1 1.9546 1.7764 -1.0111 27 1 1.3937 1.9916 0.6644 28 1 3.9174 3.1337 -0.6426 29 1 3.5018 3.4364 1.0615 30 1 6.1908 5.8523 0.3599 31 1 3.0797 -0.6611 -1.1757 32 1 1.5612 -0.3872 -2.0628 33 1 0.6011 -2.3905 -0.6472 34 1 2.8650 -2.7116 -2.7464 35 1 1.1891 -3.4114 -2.7963 36 1 1.6426 -4.8685 -0.8786 37 1 3.9361 -5.5305 -0.8519 38 1 2.3198 -3.2817 0.8619 39 1 3.6617 -2.6202 -0.1690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190125275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:59 Heat of formation + Delta-G solvation = -12.482384 kcal Electronic energy + Delta-G solvation = -18520.121102 eV Core-core repulsion = 15656.132427 eV Total energy + Delta-G solvation = -2863.988675 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.65388 -37.73479 -35.78515 -34.77332 -33.52141 -31.64905 -28.18340 -27.42167 -25.77078 -24.82948 -22.86781 -21.70625 -20.91279 -19.54754 -17.61388 -16.75988 -16.42076 -15.72829 -15.10980 -15.01706 -14.58639 -14.43102 -13.94515 -13.59511 -13.08029 -12.80270 -12.47327 -12.40004 -12.13333 -11.92046 -11.67579 -11.60385 -11.52278 -11.20952 -11.17537 -11.03858 -10.67516 -10.62421 -10.47796 -10.31540 -10.11329 -9.81667 -9.50703 -9.19258 -8.44682 -8.15666 -6.08451 -4.11210 3.29584 3.37774 3.42762 3.77283 3.85953 3.93384 4.16977 4.42551 4.52469 4.58501 4.78675 4.81268 4.94736 5.17144 5.27994 5.29950 5.40814 5.48232 5.57187 5.65485 5.68308 5.76034 5.83191 5.89011 5.93852 5.98677 6.06513 6.14920 6.37637 6.39644 6.54861 7.19024 7.20848 7.44333 7.52235 7.54803 7.87337 8.25093 8.63403 8.93897 9.54281 11.02574 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.005029 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.229901 B = 5566.596062 C = 6175.197315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.061 3.939 4 C 0.012 3.988 5 H 0.098 0.902 6 C 0.259 3.741 7 N -0.483 5.483 8 C 0.030 3.970 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.064 3.936 18 C -0.103 4.103 19 C -0.124 4.124 20 C 0.071 3.929 21 O -0.562 6.562 22 C -0.154 4.154 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.024 0.976 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.376 0.624 38 H 0.067 0.933 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 -14.295 -6.137 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.067 4.067 4 C -0.010 4.010 5 H 0.116 0.884 6 C -0.058 4.058 7 N -0.160 5.160 8 C -0.008 4.008 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.064 4.064 18 C -0.122 4.122 19 C -0.162 4.162 20 C 0.012 3.988 21 O -0.367 6.367 22 C -0.192 4.192 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.223 0.777 38 H 0.086 0.914 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.244 -14.459 -4.616 18.312 hybrid contribution 0.745 0.311 -0.355 0.882 sum -9.499 -14.148 -4.972 17.751 Atomic orbital electron populations 1.22394 0.87832 1.01920 1.00147 1.61975 1.07400 1.14292 1.43124 1.22259 0.95323 0.88344 1.00817 1.19213 0.95535 1.02058 0.84181 0.88412 1.28840 0.91106 0.91130 0.94701 1.80967 1.10528 1.11473 1.13000 1.19180 0.95856 0.87116 0.98674 1.21181 0.94287 0.94368 1.46386 0.92465 1.24952 0.98557 0.95458 0.95010 1.69948 1.36242 0.98795 1.48114 0.86543 0.85193 0.78266 0.78140 1.19662 1.20857 1.20976 1.22171 1.00971 0.92036 0.91220 1.22362 0.99528 0.93840 0.96440 1.23099 1.01307 0.95230 0.96561 1.23407 0.86844 0.91664 0.96849 1.86528 1.42429 1.57121 1.50655 1.23686 1.00533 0.96654 0.98293 0.91697 0.91596 0.95702 0.92691 0.90384 0.94508 0.95612 0.92881 0.89893 0.94471 0.89016 0.88985 0.91172 0.90568 0.77714 0.91440 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.29 60.07 0.56 0.84 16 2 N -0.54 -7.26 4.38 -242.92 -1.06 -8.32 16 3 C 0.06 0.92 4.37 -3.82 -0.02 0.90 16 4 C 0.01 0.23 2.26 -93.41 -0.21 0.02 16 5 H 0.10 1.75 6.67 -51.92 -0.35 1.41 16 6 C 0.26 5.50 13.66 -20.76 -0.28 5.21 16 7 N -0.48 -11.08 18.54 42.15 0.78 -10.30 16 8 C 0.03 0.71 4.42 -27.89 -0.12 0.58 16 9 C -0.52 -14.07 8.60 -34.44 -0.30 -14.36 16 10 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 13 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.06 0.76 4.63 -3.83 -0.02 0.74 16 18 C -0.10 -1.07 3.71 -89.67 -0.33 -1.40 16 19 C -0.12 -1.21 7.47 -25.92 -0.19 -1.41 16 20 C 0.07 0.70 5.20 -25.92 -0.13 0.56 16 21 O -0.56 -6.01 13.67 -35.23 -0.48 -6.49 16 22 C -0.15 -1.73 7.48 -25.77 -0.19 -1.92 16 23 H 0.06 0.64 6.52 -51.93 -0.34 0.30 16 24 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 25 H 0.02 0.25 8.07 -51.93 -0.42 -0.17 16 26 H 0.05 0.77 8.00 -51.93 -0.42 0.35 16 27 H 0.08 1.18 7.74 -51.92 -0.40 0.77 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.08 1.08 6.29 -51.93 -0.33 0.75 16 32 H 0.04 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.09 0.89 6.36 -51.93 -0.33 0.56 16 34 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.38 2.46 9.12 45.56 0.42 2.88 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.19 7.91 -51.93 -0.41 0.78 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -31.36 324.58 -6.97 -38.33 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.47 Total: -1.02 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.34 Total: -8.61 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.45 Total: -43.54 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.48 Total: -6.49 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.36 -6.97 -38.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190125275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.846 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds