Wall clock time and date at job start Mon Mar 30 2020 03:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00220 * 2 1 4 4 C 1.52999 * 109.47421 * 160.26848 * 3 2 1 5 5 H 1.09010 * 109.46577 * 55.42291 * 4 3 2 6 6 C 1.47200 * 109.47358 * 295.42478 * 4 3 2 7 7 N 3.65886 * 124.14611 * 79.03587 * 2 1 3 8 8 C 1.52992 * 109.47271 * 175.41615 * 4 3 2 9 9 C 1.50697 * 109.47235 * 185.00251 * 8 4 3 10 10 H 1.07998 * 120.00180 * 0.02562 * 9 8 4 11 11 C 1.37884 * 120.00227 * 180.02562 * 9 8 4 12 12 N 1.31514 * 119.99638 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00210 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47201 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47390 * 119.99963 * 13 11 9 16 16 H 1.48497 * 109.47123 * 240.00082 * 13 11 9 17 17 C 1.46902 * 110.99958 * 236.04478 * 2 1 3 18 18 C 1.52989 * 109.47414 * 293.95635 * 17 2 1 19 19 C 1.53784 * 113.61639 * 175.00173 * 18 17 2 20 20 C 1.53778 * 87.08189 * 140.06427 * 19 18 17 21 21 O 1.42908 * 113.61183 * 219.93392 * 20 19 18 22 22 C 1.53779 * 87.17537 * 334.52377 * 20 19 18 23 23 H 1.08998 * 109.46918 * 189.50890 * 1 2 3 24 24 H 1.08999 * 109.46749 * 309.50507 * 1 2 3 25 25 H 1.09000 * 109.47173 * 69.50633 * 1 2 3 26 26 H 1.08995 * 109.47397 * 280.27847 * 3 2 1 27 27 H 1.09008 * 109.47004 * 40.27465 * 3 2 1 28 28 H 1.09000 * 109.47691 * 305.00810 * 8 4 3 29 29 H 1.09001 * 109.46819 * 65.00489 * 8 4 3 30 30 H 0.96997 * 119.99855 * 180.02562 * 12 11 9 31 31 H 1.08999 * 109.47013 * 173.94898 * 17 2 1 32 32 H 1.09004 * 109.46952 * 53.96027 * 17 2 1 33 33 H 1.09001 * 112.85105 * 43.79932 * 18 17 2 34 34 H 1.08996 * 113.61505 * 25.51084 * 19 18 17 35 35 H 1.09000 * 113.60937 * 254.61100 * 19 18 17 36 36 H 1.08995 * 113.61673 * 89.11613 * 20 19 18 37 37 H 0.96702 * 113.99635 * 178.47069 * 21 20 19 38 38 H 1.08999 * 113.61099 * 140.02203 * 22 20 19 39 39 H 1.09003 * 113.61724 * 270.92838 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4459 1.3610 0.4870 5 1 4.0308 0.6771 -0.1283 6 6 3.4893 0.9179 1.8900 7 7 3.5228 0.5759 2.9728 8 6 4.0303 2.7707 0.3790 9 6 5.4926 2.7375 0.7416 10 1 5.9587 1.8041 1.0207 11 6 6.2357 3.8987 0.7170 12 7 5.6680 5.0355 0.3776 13 14 8.0484 3.8574 1.1657 14 1 8.4420 2.4670 1.5083 15 1 8.8549 4.3306 0.0121 16 1 8.2894 4.7416 2.3341 17 6 1.9955 -0.7660 -1.1376 18 6 1.6315 -2.2425 -0.9704 19 6 2.0318 -3.1156 -2.1715 20 6 2.4494 -4.1885 -1.1521 21 8 3.6558 -4.8707 -1.5008 22 6 2.6576 -3.0437 -0.1467 23 1 -0.3633 -1.0135 0.1698 24 1 -0.3633 0.6538 0.7929 25 1 -0.3633 0.3598 -0.9626 26 1 1.9546 1.7764 -1.0111 27 1 1.3937 1.9916 0.6644 28 1 3.9174 3.1337 -0.6426 29 1 3.5018 3.4364 1.0615 30 1 6.1908 5.8523 0.3599 31 1 3.0797 -0.6611 -1.1757 32 1 1.5612 -0.3872 -2.0628 33 1 0.6011 -2.3905 -0.6472 34 1 2.8650 -2.7116 -2.7464 35 1 1.1891 -3.4114 -2.7963 36 1 1.6426 -4.8685 -0.8786 37 1 3.9361 -5.5305 -0.8519 38 1 2.3198 -3.2817 0.8619 39 1 3.6617 -2.6202 -0.1690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190125275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:59 Heat of formation + Delta-G solvation = -34.120692 kcal Electronic energy + Delta-G solvation = -18521.059410 eV Core-core repulsion = 15656.132427 eV Total energy + Delta-G solvation = -2864.926983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51238 -38.95993 -37.18682 -35.80380 -35.34887 -33.42032 -29.27416 -28.83932 -26.58958 -26.25703 -24.04408 -23.48343 -21.91061 -20.36525 -18.53645 -18.47025 -18.10519 -16.78082 -16.53385 -16.07629 -15.84618 -15.72292 -14.96156 -14.79768 -14.48096 -14.27841 -14.00441 -13.74175 -13.33090 -13.25316 -13.04092 -12.92980 -12.77611 -12.58571 -12.52163 -12.41602 -12.24202 -12.16297 -11.74548 -11.49195 -11.37342 -11.10793 -11.06619 -10.60000 -10.56010 -9.15927 -8.20227 -6.28265 1.38291 1.41292 1.51876 2.07639 2.15298 2.40989 2.93598 3.15279 3.36546 3.42527 3.69778 3.77801 3.95526 4.04759 4.16583 4.30732 4.39251 4.57849 4.60095 4.70638 4.72579 4.82244 4.88105 4.90689 4.91924 4.98536 4.99982 5.11421 5.15098 5.33078 5.45901 5.58049 5.61243 5.78756 6.09635 6.23006 6.25148 6.82802 6.93104 6.94101 7.40317 8.90947 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.005029 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.229901 B = 5566.596062 C = 6175.197315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.071 3.929 4 C 0.023 3.977 5 H 0.108 0.892 6 C 0.268 3.732 7 N -0.515 5.515 8 C 0.038 3.962 9 C -0.538 4.538 10 H 0.051 0.949 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.948 3.052 14 H -0.271 1.271 15 H -0.272 1.272 16 H -0.284 1.284 17 C 0.063 3.937 18 C -0.095 4.095 19 C -0.122 4.122 20 C 0.076 3.924 21 O -0.582 6.582 22 C -0.161 4.161 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.002 0.998 30 H 0.264 0.736 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.392 0.608 38 H 0.062 0.938 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 -15.470 -6.962 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.058 4.058 4 C 0.001 3.999 5 H 0.126 0.874 6 C -0.048 4.048 7 N -0.192 5.192 8 C -0.001 4.001 9 C -0.576 4.576 10 H 0.069 0.931 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.774 3.226 14 H -0.196 1.196 15 H -0.197 1.197 16 H -0.210 1.210 17 C -0.065 4.065 18 C -0.114 4.114 19 C -0.160 4.160 20 C 0.018 3.982 21 O -0.390 6.390 22 C -0.199 4.199 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.241 0.759 38 H 0.081 0.919 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.043 -15.656 -5.441 19.916 hybrid contribution 0.992 0.653 -0.086 1.191 sum -10.051 -15.003 -5.527 18.885 Atomic orbital electron populations 1.22440 0.85998 1.02900 1.00853 1.61908 1.09081 1.13051 1.44162 1.22074 0.92598 0.89822 1.01309 1.19153 0.98313 0.99306 0.83147 0.87394 1.29304 0.90061 0.90353 0.95043 1.80959 1.11803 1.12501 1.13963 1.18997 0.94158 0.89349 0.97619 1.21559 0.96135 0.94069 1.45857 0.93075 1.25694 1.02441 0.95322 0.95172 1.70033 1.37707 0.99326 1.49212 0.85652 0.80822 0.78107 0.78058 1.19553 1.19703 1.20975 1.22193 1.00039 0.92926 0.91296 1.22342 0.99829 0.92675 0.96537 1.23074 1.01529 0.94948 0.96449 1.23476 0.87159 0.91656 0.95942 1.86484 1.43008 1.57811 1.51733 1.23667 0.99549 0.98040 0.98672 0.90256 0.91918 0.94272 0.91228 0.90498 0.94735 0.97928 0.92679 0.91555 0.93177 0.87582 0.90302 0.89223 0.88237 0.75859 0.91934 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.29 127.69 1.19 1.68 16 2 N -0.56 -13.91 4.38 -922.46 -4.04 -17.95 16 3 C 0.07 2.05 4.37 86.30 0.38 2.42 16 4 C 0.02 0.85 2.26 -12.60 -0.03 0.82 16 5 H 0.11 3.83 6.67 -2.38 -0.02 3.81 16 6 C 0.27 11.39 13.66 89.44 1.22 12.61 16 7 N -0.51 -23.68 18.54 20.01 0.37 -23.31 16 8 C 0.04 1.76 4.42 29.84 0.13 1.89 16 9 C -0.54 -29.03 8.60 25.60 0.22 -28.81 16 10 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 11 C 0.01 0.70 5.46 84.66 0.46 1.16 16 12 N -0.92 -53.32 13.29 21.45 0.28 -53.03 16 13 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 C 0.06 1.39 4.63 86.30 0.40 1.79 16 18 C -0.10 -1.78 3.71 -10.18 -0.04 -1.82 16 19 C -0.12 -2.12 7.47 31.12 0.23 -1.89 16 20 C 0.08 1.35 5.20 31.12 0.16 1.51 16 21 O -0.58 -11.66 13.67 -148.98 -2.04 -13.69 16 22 C -0.16 -3.48 7.48 31.21 0.23 -3.24 16 23 H 0.08 1.31 6.52 -2.39 -0.02 1.30 16 24 H 0.06 1.26 7.84 -2.39 -0.02 1.24 16 25 H 0.04 0.66 8.07 -2.39 -0.02 0.64 16 26 H 0.07 1.81 8.00 -2.39 -0.02 1.79 16 27 H 0.08 2.24 7.74 -2.38 -0.02 2.22 16 28 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.07 1.68 6.29 -2.39 -0.02 1.66 16 32 H 0.05 0.98 8.07 -2.38 -0.02 0.96 16 33 H 0.11 1.71 6.36 -2.39 -0.02 1.69 16 34 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.39 4.62 9.12 -74.06 -0.68 3.94 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.76 7.91 -2.39 -0.02 1.74 16 Total: -1.00 -66.29 324.58 1.53 -64.77 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.36 Total: 9.08 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.56 Total: -11.87 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.39 Total: -94.30 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -2.04 Total: -13.69 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.29 1.53 -64.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190125275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.648 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds