Wall clock time and date at job start Mon Mar 30 2020 04:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86804 * 120.00129 * 2 1 4 4 H 1.48495 * 109.47211 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47168 * 300.00313 * 3 2 1 6 6 H 1.48501 * 109.47058 * 59.99999 * 3 2 1 7 7 C 1.37879 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99520 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.48773 * 300.03726 * 9 7 2 11 11 C 1.53056 * 109.48552 * 179.97438 * 9 7 2 12 12 N 1.46963 * 109.36215 * 181.62687 * 11 9 7 13 13 C 1.46898 * 110.99684 * 183.18755 * 12 11 9 14 14 C 1.54239 * 108.89625 * 297.88474 * 13 12 11 15 15 C 1.50482 * 108.52314 * 159.26756 * 14 13 12 16 16 C 1.54067 * 112.50131 * 94.14917 * 15 14 13 17 17 C 1.54067 * 112.81401 * 318.28622 * 16 15 14 18 18 C 1.50475 * 112.49795 * 318.27938 * 17 16 15 19 19 C 1.45545 * 108.89387 * 175.00073 * 13 12 11 20 20 C 1.46956 * 110.87582 * 59.32405 * 12 11 9 21 21 C 1.53056 * 109.36524 * 300.67412 * 20 12 11 22 22 N 1.46953 * 109.49308 * 60.10272 * 9 7 2 23 23 H 0.96999 * 120.00448 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.49121 * 301.59676 * 11 9 7 25 25 H 1.08998 * 109.48697 * 61.66447 * 11 9 7 26 26 H 1.09001 * 108.87512 * 56.40286 * 13 12 11 27 27 H 1.08996 * 109.62830 * 278.97122 * 14 13 12 28 28 H 1.08997 * 109.63264 * 39.55788 * 14 13 12 29 29 H 1.08999 * 108.87369 * 333.36833 * 15 14 13 30 30 H 1.08997 * 108.87548 * 214.92859 * 15 14 13 31 31 H 1.08996 * 108.81535 * 197.42218 * 16 15 14 32 32 H 1.08997 * 108.72243 * 79.08080 * 16 15 14 33 33 H 1.09002 * 108.87695 * 197.50630 * 17 16 15 34 34 H 1.09000 * 108.79814 * 79.00564 * 17 16 15 35 35 H 1.08999 * 109.62809 * 334.44821 * 18 17 16 36 36 H 1.08992 * 109.79055 * 213.95916 * 18 17 16 37 37 H 1.09003 * 108.89282 * 303.44843 * 19 13 12 38 38 H 1.09001 * 108.89081 * 62.02906 * 19 13 12 39 39 H 1.09004 * 109.48845 * 180.71235 * 20 12 11 40 40 H 1.09000 * 109.51032 * 60.65587 * 20 12 11 41 41 H 1.09002 * 109.48967 * 298.44078 * 21 20 12 42 42 H 1.08998 * 109.48697 * 178.37025 * 21 20 12 43 43 H 1.00898 * 111.00079 * 303.16244 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6233 -2.5566 0.8899 11 6 2.2452 -3.6628 0.0005 12 7 1.5081 -4.9335 -0.0388 13 6 2.4266 -6.0774 0.0362 14 6 3.3593 -6.0505 -1.1920 15 6 4.5847 -6.8662 -0.8797 16 6 4.4616 -8.3239 -1.3629 17 6 3.0697 -8.9270 -1.0938 18 6 2.5341 -8.5565 0.2627 19 6 1.6467 -7.3038 0.1137 20 6 0.6651 -5.0129 -1.2399 21 6 -0.3292 -3.8493 -1.2399 22 7 0.4082 -2.5788 -1.2007 23 1 -0.4851 0.8400 0.0004 24 1 2.8908 -3.5895 -0.8746 25 1 2.8522 -3.6224 0.9050 26 1 3.0309 -5.9858 0.9387 27 1 2.8444 -6.4782 -2.0522 28 1 3.6493 -5.0225 -1.4091 29 1 4.7441 -6.8643 0.1986 30 1 5.4469 -6.4062 -1.3624 31 1 5.2113 -8.9281 -0.8521 32 1 4.6568 -8.3548 -2.4348 33 1 3.1366 -10.0128 -1.1620 34 1 2.3781 -8.5681 -1.8561 35 1 3.3628 -8.3401 0.9369 36 1 1.9418 -9.3793 0.6629 37 1 0.9763 -7.2422 0.9709 38 1 1.0507 -7.4010 -0.7937 39 1 0.1200 -5.9569 -1.2399 40 1 1.2924 -4.9552 -2.1294 41 1 -0.9748 -3.9225 -0.3647 42 1 -0.9362 -3.8897 -2.1444 43 1 -0.2226 -1.7930 -1.2527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221593519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:21 Heat of formation + Delta-G solvation = -6.930556 kcal Electronic energy + Delta-G solvation = -19999.989978 eV Core-core repulsion = 17272.075142 eV Total energy + Delta-G solvation = -2727.914836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78530 -37.07322 -34.10724 -32.26695 -32.14274 -30.06723 -29.61985 -25.63329 -25.15258 -24.27961 -22.57033 -22.03323 -19.79505 -19.38250 -18.20110 -16.76214 -15.80296 -15.21417 -14.79789 -14.61976 -14.42943 -13.96253 -13.72787 -13.40535 -13.14878 -12.87686 -12.71508 -12.37735 -12.16817 -11.90750 -11.74489 -10.98251 -10.95508 -10.90766 -10.78700 -10.60332 -10.56912 -10.41439 -10.23264 -10.15729 -10.07806 -9.83985 -9.33856 -9.01619 -8.56728 -7.56829 -6.81270 -6.07527 -4.10177 3.29994 3.37904 3.42102 4.36277 4.50457 4.67985 4.88484 4.96276 5.18582 5.21013 5.25201 5.32837 5.44362 5.49484 5.68096 5.76110 5.79532 5.85671 5.92551 6.06992 6.07625 6.14442 6.16973 6.18956 6.22619 6.24861 6.34386 6.44465 6.46346 6.50387 6.56440 6.60725 6.76236 6.85076 6.98150 7.51670 7.77063 7.80449 7.94733 8.24872 8.69923 9.02185 9.15438 9.57638 11.03197 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035973 B = 0.005358 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.171826 B = 5224.628676 C = 5674.188985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.219 3.781 10 H 0.003 0.997 11 C 0.068 3.932 12 N -0.537 5.537 13 C 0.088 3.912 14 C -0.152 4.152 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.112 4.112 20 C 0.060 3.940 21 C 0.055 3.945 22 N -0.686 5.686 23 H 0.263 0.737 24 H 0.034 0.966 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 -15.304 -1.777 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.111 3.889 10 H 0.020 0.980 11 C -0.059 4.059 12 N -0.261 5.261 13 C -0.021 4.021 14 C -0.191 4.191 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.068 4.068 21 C -0.076 4.076 22 N -0.323 5.323 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.553 -15.398 -1.756 16.153 hybrid contribution 0.261 1.103 -0.087 1.136 sum 4.814 -14.295 -1.843 15.196 Atomic orbital electron populations 1.69687 1.06032 1.26850 1.51501 1.24973 0.94878 0.99277 0.94317 0.86442 0.80059 0.83389 0.77474 1.19789 1.20981 1.21116 1.21163 0.93066 0.90154 1.49927 0.92261 1.19032 0.90516 0.91258 0.88095 0.97963 1.22341 0.96439 0.88009 0.99135 1.62579 1.22371 1.02491 1.38629 1.20601 0.92993 0.91410 0.97069 1.22041 0.96803 1.00676 0.99559 1.21252 0.98090 0.94608 1.01191 1.21902 0.96793 0.95960 1.00582 1.21340 0.96865 0.99522 0.97791 1.21276 0.99369 0.97412 0.97170 1.20573 0.98335 0.93514 1.02552 1.22119 0.95555 0.97789 0.91327 1.21866 0.94679 0.92536 0.98499 1.60997 1.26133 1.02633 1.42550 0.92728 0.94824 0.92251 0.91057 0.91955 0.90943 0.92229 0.92715 0.92691 0.92687 0.92812 0.92169 0.91749 0.92150 0.91498 0.92085 0.92022 0.94809 0.96282 0.92788 0.81434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.50 55.43 0.64 -24.88 16 2 C 0.07 1.85 5.34 -17.82 -0.10 1.75 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.96 8.76 -34.44 -0.30 -14.26 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.22 5.66 2.55 -68.81 -0.18 5.49 16 10 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 11 C 0.07 1.50 4.47 -3.76 -0.02 1.48 16 12 N -0.54 -10.13 4.66 -229.95 -1.07 -11.21 16 13 C 0.09 1.33 1.75 -70.58 -0.12 1.21 16 14 C -0.15 -2.17 3.88 -27.34 -0.11 -2.27 16 15 C -0.11 -1.35 5.31 -27.43 -0.15 -1.49 16 16 C -0.11 -1.17 5.85 -25.62 -0.15 -1.32 16 17 C -0.12 -1.19 5.32 -27.44 -0.15 -1.33 16 18 C -0.11 -1.21 5.61 -27.34 -0.15 -1.37 16 19 C -0.11 -1.46 4.28 -29.60 -0.13 -1.59 16 20 C 0.06 1.11 4.89 -3.76 -0.02 1.09 16 21 C 0.06 1.15 6.72 -3.77 -0.03 1.12 16 22 N -0.69 -16.98 6.53 -107.81 -0.70 -17.68 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.03 0.76 6.11 -51.93 -0.32 0.44 16 25 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 26 H 0.07 1.11 7.44 -51.93 -0.39 0.72 16 27 H 0.06 0.88 6.51 -51.93 -0.34 0.55 16 28 H 0.07 1.20 5.73 -51.93 -0.30 0.91 16 29 H 0.06 0.71 6.63 -51.93 -0.34 0.36 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.65 6.62 -51.93 -0.34 0.30 16 35 H 0.06 0.69 6.98 -51.93 -0.36 0.33 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.80 5.55 -51.93 -0.29 0.52 16 39 H 0.06 0.99 6.17 -51.93 -0.32 0.67 16 40 H 0.03 0.64 6.97 -51.93 -0.36 0.27 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.36 9.69 6.72 -39.29 -0.26 9.43 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -27.79 307.17 -10.51 -38.29 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.39 Total: 6.05 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.58 Total: -11.51 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -1.14 Total: -53.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.79 -10.51 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221593519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.363 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds