Wall clock time and date at job start Mon Mar 30 2020 04:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48507 * 109.46789 * 274.98860 * 3 2 1 5 5 H 1.48493 * 109.47442 * 34.98754 * 3 2 1 6 6 H 1.48499 * 109.47325 * 154.98992 * 3 2 1 7 7 C 1.37882 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99654 * 187.88062 * 7 2 1 9 9 C 1.50693 * 119.99821 * 7.88141 * 7 2 1 10 10 H 1.08999 * 108.98332 * 306.59670 * 9 7 2 11 11 C 1.50782 * 108.99696 * 65.44069 * 9 7 2 12 12 N 1.47676 * 108.09379 * 215.16046 * 11 9 7 13 13 C 1.40082 * 114.57862 * 278.67106 * 12 11 9 14 14 C 1.54524 * 111.44673 * 61.48333 * 13 12 11 15 15 C 1.50788 * 108.92502 * 283.90775 * 14 13 12 16 16 N 1.47750 * 108.92772 * 187.80153 * 9 7 2 17 17 C 1.46898 * 110.99964 * 72.22794 * 16 9 7 18 18 C 1.53001 * 109.47018 * 191.25449 * 17 16 9 19 19 C 1.53005 * 109.47275 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.46892 * 59.99830 * 19 18 17 21 21 C 1.52991 * 109.47428 * 300.00134 * 20 19 18 22 22 C 1.52999 * 109.46996 * 71.25830 * 17 16 9 23 23 H 0.97000 * 119.99686 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.73616 * 95.50797 * 11 9 7 25 25 H 1.09001 * 109.73373 * 334.81402 * 11 9 7 26 26 H 1.00897 * 111.00535 * 45.37902 * 12 11 9 27 27 H 1.08994 * 109.07819 * 181.96948 * 13 12 11 28 28 H 1.08998 * 109.07526 * 301.00214 * 13 12 11 29 29 H 1.08997 * 109.55597 * 43.80934 * 14 13 12 30 30 H 1.09001 * 109.55697 * 164.12609 * 14 13 12 31 31 H 1.09003 * 108.82380 * 331.85398 * 15 14 13 32 32 H 1.08999 * 108.81605 * 213.60808 * 15 14 13 33 33 H 1.08993 * 109.47262 * 311.25338 * 17 16 9 34 34 H 1.09004 * 109.47421 * 300.00270 * 18 17 16 35 35 H 1.09008 * 109.47078 * 60.00144 * 18 17 16 36 36 H 1.08997 * 109.46537 * 300.00145 * 19 18 17 37 37 H 1.09003 * 109.46764 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46774 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.46956 * 60.00528 * 20 19 18 40 40 H 1.09004 * 109.47374 * 300.00138 * 21 20 19 41 41 H 1.08995 * 109.47183 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.46946 * 299.99778 * 22 17 16 43 43 H 1.09004 * 109.47126 * 59.99924 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1072 -1.3949 5 1 1.5033 2.6199 0.8027 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1941 0.0005 8 1 3.0768 -1.1984 0.1288 9 6 1.2617 -2.4930 -0.1778 10 1 0.4590 -2.5463 0.5576 11 6 0.6630 -2.5301 -1.5612 12 7 -0.6342 -3.2313 -1.4809 13 6 -0.5419 -4.6291 -1.4817 14 6 0.2550 -5.1434 -0.2617 15 6 1.7245 -4.9057 -0.5019 16 7 2.1964 -3.6147 0.0486 17 6 2.5319 -3.7409 1.4732 18 6 3.7011 -4.7141 1.6374 19 6 4.0502 -4.8461 3.1213 20 6 2.8351 -5.3750 3.8859 21 6 1.6660 -4.4019 3.7217 22 6 1.3170 -4.2696 2.2383 23 1 -0.4850 0.8401 0.0004 24 1 1.3300 -3.0658 -2.2367 25 1 0.5102 -1.5134 -1.9234 26 1 -1.1736 -2.9050 -0.6932 27 1 -1.5459 -5.0524 -1.4554 28 1 -0.0428 -4.9527 -2.3951 29 1 -0.0611 -4.6071 0.6330 30 1 0.0751 -6.2106 -0.1319 31 1 1.9121 -4.9191 -1.5756 32 1 2.2916 -5.7131 -0.0387 33 1 2.8135 -2.7648 1.8680 34 1 3.4195 -5.6903 1.2425 35 1 4.5666 -4.3375 1.0923 36 1 4.3315 -3.8701 3.5164 37 1 4.8834 -5.5391 3.2381 38 1 3.0839 -5.4695 4.9429 39 1 2.5537 -6.3511 3.4906 40 1 1.9473 -3.4258 4.1170 41 1 0.8002 -4.7789 4.2660 42 1 0.4841 -3.5763 2.1213 43 1 1.0355 -5.2458 1.8434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221595787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:33 Heat of formation + Delta-G solvation = -16.985559 kcal Electronic energy + Delta-G solvation = -20765.664538 eV Core-core repulsion = 18037.313685 eV Total energy + Delta-G solvation = -2728.350853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16696 -38.57359 -35.50620 -34.94354 -32.44461 -31.68453 -30.43742 -27.93449 -26.98205 -25.03326 -23.64847 -22.72482 -21.98910 -20.67950 -20.17730 -18.26766 -17.45540 -16.75538 -16.33862 -15.89849 -15.75485 -15.46207 -15.01164 -14.80986 -14.33857 -14.18582 -13.89913 -13.53274 -13.32843 -13.13810 -12.88807 -12.83625 -12.64397 -12.51729 -12.29016 -12.19381 -11.93499 -11.84953 -11.64217 -11.45262 -11.17350 -11.03791 -10.93427 -10.79403 -10.45650 -8.98111 -8.68883 -8.07682 -6.14935 1.39763 1.42460 1.51187 2.43804 3.19988 3.31837 3.68033 3.82574 3.94997 4.02076 4.13086 4.21234 4.33994 4.42004 4.46299 4.59127 4.66678 4.69446 4.72128 4.79966 4.82491 4.84753 4.89690 5.02223 5.05679 5.13390 5.19262 5.21886 5.25621 5.30395 5.34239 5.40112 5.45857 5.57143 5.62024 5.73889 5.78917 6.25636 6.43778 6.61610 6.76440 6.91928 7.04487 7.51708 8.96764 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.009666 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.221187 B = 2896.056250 C = 3914.132105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.019 3.981 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.044 0.956 9 C 0.205 3.795 10 H -0.013 1.013 11 C 0.100 3.900 12 N -0.707 5.707 13 C 0.078 3.922 14 C -0.198 4.198 15 C 0.056 3.944 16 N -0.550 5.550 17 C 0.100 3.900 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.139 4.139 23 H 0.260 0.740 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.336 0.664 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 -12.302 4.583 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.063 0.937 9 C 0.098 3.902 10 H 0.005 0.995 11 C -0.028 4.028 12 N -0.336 5.336 13 C -0.054 4.054 14 C -0.239 4.239 15 C -0.071 4.071 16 N -0.273 5.273 17 C -0.009 4.009 18 C -0.140 4.140 19 C -0.152 4.152 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.178 4.178 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.155 0.845 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.336 -12.045 3.629 13.014 hybrid contribution -0.257 1.205 1.157 1.690 sum 3.079 -10.840 4.786 12.243 Atomic orbital electron populations 1.70059 1.06664 1.27061 1.50990 1.25538 0.95559 1.01656 0.95312 0.85725 0.78758 0.80282 0.77925 1.20376 1.21187 1.19909 1.21347 0.93569 0.91516 1.49085 0.93730 1.19426 0.89927 0.87802 0.93083 0.99542 1.21573 0.87406 0.96819 0.97044 1.57846 1.19762 1.06341 1.49660 1.21082 0.99848 0.87884 0.96577 1.23229 0.97918 1.02282 1.00453 1.21962 0.93885 0.91649 0.99635 1.62226 1.45876 1.03912 1.15289 1.21458 0.94474 0.97820 0.87176 1.21574 0.96989 0.98587 0.96893 1.21515 0.98321 1.01207 0.94202 1.21484 0.94189 0.98376 1.00600 1.21493 0.99046 0.99582 0.95244 1.22283 0.98333 1.00353 0.96812 0.93141 0.93401 0.93019 0.84459 0.90684 0.91918 0.92234 0.89807 0.92766 0.90434 0.93609 0.91260 0.92711 0.93075 0.90040 0.90614 0.91274 0.93611 0.91577 0.95404 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.57 12.44 21.45 0.27 -51.30 16 2 C 0.02 1.05 4.87 84.66 0.41 1.46 16 3 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.52 -28.41 7.61 25.60 0.19 -28.21 16 8 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 9 C 0.21 10.01 1.08 43.28 0.05 10.06 16 10 H -0.01 -0.69 4.90 -2.39 -0.01 -0.71 16 11 C 0.10 4.76 5.52 85.43 0.47 5.23 16 12 N -0.71 -29.30 6.40 -528.11 -3.38 -32.68 16 13 C 0.08 2.58 6.04 88.05 0.53 3.11 16 14 C -0.20 -6.24 4.38 30.39 0.13 -6.11 16 15 C 0.06 1.91 4.55 85.36 0.39 2.30 16 16 N -0.55 -22.79 4.40 -853.50 -3.75 -26.54 16 17 C 0.10 3.76 2.08 44.92 0.09 3.85 16 18 C -0.10 -3.05 5.14 30.60 0.16 -2.89 16 19 C -0.11 -2.79 5.92 30.60 0.18 -2.60 16 20 C -0.11 -2.45 5.92 30.59 0.18 -2.27 16 21 C -0.12 -3.25 5.92 30.58 0.18 -3.07 16 22 C -0.14 -4.74 3.48 30.58 0.11 -4.63 16 23 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 24 H 0.05 2.20 6.77 -2.38 -0.02 2.19 16 25 H 0.05 2.82 6.68 -2.39 -0.02 2.80 16 26 H 0.34 14.98 8.15 -89.70 -0.73 14.25 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.01 7.59 -2.39 -0.02 2.00 16 29 H 0.06 2.14 4.13 -2.39 -0.01 2.13 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.90 6.52 -2.39 -0.02 1.88 16 32 H 0.08 2.29 5.63 -2.39 -0.01 2.28 16 33 H 0.05 2.08 7.23 -2.39 -0.02 2.07 16 34 H 0.07 1.86 6.12 -2.39 -0.01 1.85 16 35 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.03 1.15 5.90 -2.39 -0.01 1.13 16 43 H 0.07 2.31 5.59 -2.39 -0.01 2.29 16 Total: -1.00 -58.12 301.22 -1.50 -59.62 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.26 Total: 28.28 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 3.08 Total: -23.78 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -6.87 Total: -110.52 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -58.12 -1.50 -59.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221595787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.638 kcal (2) G-P(sol) polarization free energy of solvation -58.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds