Wall clock time and date at job start Mon Mar 30 2020 04:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00172 * 2 1 4 4 H 1.48493 * 109.47088 * 270.00070 * 3 2 1 5 5 H 1.48498 * 109.46764 * 29.99688 * 3 2 1 6 6 H 1.48498 * 109.47030 * 149.99668 * 3 2 1 7 7 C 1.37884 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47222 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47172 * 180.02562 * 11 10 9 13 13 C 1.47023 * 111.00186 * 293.35055 * 12 11 10 14 14 C 1.52924 * 109.05437 * 176.26008 * 13 12 11 15 15 N 1.47128 * 109.74983 * 58.81461 * 14 13 12 16 16 C 1.47046 * 109.88006 * 177.86455 * 15 14 13 17 17 C 1.52915 * 109.88259 * 184.75456 * 16 15 14 18 18 C 1.53182 * 109.00063 * 300.39992 * 17 16 15 19 19 C 1.53009 * 108.97478 * 58.22159 * 18 17 16 20 20 C 1.46829 * 111.17788 * 301.58118 * 15 14 13 21 21 H 1.08997 * 109.52261 * 297.24112 * 20 15 14 22 22 C 1.46840 * 111.00328 * 169.99788 * 12 11 10 23 23 H 0.96996 * 120.00301 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.46939 * 59.99547 * 9 7 2 25 25 H 1.08997 * 109.46876 * 300.00410 * 9 7 2 26 26 H 1.08998 * 109.46819 * 60.00141 * 10 9 7 27 27 H 1.08997 * 109.46789 * 300.00218 * 10 9 7 28 28 H 1.08998 * 109.47134 * 59.99733 * 11 10 9 29 29 H 1.09005 * 109.47199 * 300.00086 * 11 10 9 30 30 H 1.09003 * 109.54237 * 296.12529 * 13 12 11 31 31 H 1.09001 * 109.54409 * 56.30129 * 13 12 11 32 32 H 1.08997 * 109.42124 * 298.73381 * 14 13 12 33 33 H 1.09000 * 109.42983 * 178.90160 * 14 13 12 34 34 H 1.09002 * 109.40484 * 64.63570 * 16 15 14 35 35 H 1.09000 * 109.33784 * 304.83825 * 16 15 14 36 36 H 1.08999 * 109.55487 * 180.54044 * 17 16 15 37 37 H 1.09002 * 109.54794 * 60.24970 * 17 16 15 38 38 H 1.09002 * 109.57253 * 178.10239 * 18 17 16 39 39 H 1.08998 * 109.56770 * 298.34833 * 18 17 16 40 40 H 1.09001 * 109.44587 * 62.17288 * 19 18 17 41 41 H 1.08997 * 109.44650 * 182.07504 * 19 18 17 42 42 H 1.09007 * 109.41948 * 63.14341 * 22 12 11 43 43 H 1.09001 * 109.37592 * 303.29481 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 7 2.4349 -6.1036 0.0005 13 6 3.1917 -6.1505 -1.2591 14 6 4.2334 -7.2669 -1.1743 15 7 3.5643 -8.5536 -0.9269 16 6 4.5586 -9.6364 -0.8957 17 6 3.8534 -10.9861 -0.7567 18 6 3.0382 -10.9917 0.5401 19 6 2.0337 -9.8382 0.5013 20 6 2.7791 -8.5133 0.3131 21 1 3.4442 -8.3454 1.1602 22 6 1.7506 -7.3810 0.2380 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8539 -5.0446 -0.8903 29 1 0.8533 -5.0451 0.8897 30 1 2.5106 -6.3496 -2.0865 31 1 3.6914 -5.1953 -1.4200 32 1 4.9256 -7.0556 -0.3592 33 1 4.7853 -7.3199 -2.1128 34 1 5.2282 -9.4889 -0.0483 35 1 5.1360 -9.6230 -1.8201 36 1 4.5955 -11.7839 -0.7245 37 1 3.1880 -11.1392 -1.6064 38 1 2.5044 -11.9377 0.6318 39 1 3.7064 -10.8654 1.3919 40 1 1.3438 -9.9856 -0.3296 41 1 1.4744 -9.8124 1.4365 42 1 1.0549 -7.5767 -0.5781 43 1 1.2010 -7.3275 1.1778 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226201227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:48 Heat of formation + Delta-G solvation = -15.484468 kcal Electronic energy + Delta-G solvation = -19027.969153 eV Core-core repulsion = 16299.683392 eV Total energy + Delta-G solvation = -2728.285761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95787 -37.01405 -34.14194 -33.34042 -32.09402 -30.66003 -29.21205 -26.79593 -24.40223 -23.86631 -22.94141 -22.07163 -20.18486 -19.72103 -19.60394 -16.38908 -15.98232 -15.63525 -15.09139 -14.75655 -14.59030 -14.40685 -14.28035 -13.96244 -13.54514 -13.17436 -13.09573 -12.27980 -12.14810 -11.73544 -11.69562 -11.45738 -11.42211 -11.14390 -11.09718 -10.86053 -10.78388 -10.56082 -10.55614 -10.37595 -10.15467 -9.56107 -9.28335 -9.01430 -8.41257 -8.31240 -8.02508 -5.96565 -3.98464 3.34227 3.40216 3.44103 3.76946 4.12314 4.49670 4.60880 4.63499 4.73523 4.96350 5.13318 5.19469 5.26407 5.34064 5.38461 5.39226 5.45116 5.55257 5.58565 5.69319 5.72552 5.75107 5.79934 5.86108 5.91397 5.99210 6.00780 6.10449 6.14554 6.25514 6.36094 6.73984 6.78831 6.98585 7.03427 7.16656 7.39713 7.45028 7.72283 7.87604 8.04207 8.47675 9.08798 9.65310 11.14952 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.054170 B = 0.003570 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.767397 B = 7840.818841 C = 8176.103102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.057 3.943 12 N -0.540 5.540 13 C 0.054 3.946 14 C 0.057 3.943 15 N -0.532 5.532 16 C 0.054 3.946 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.113 4.113 20 C 0.090 3.910 21 H 0.048 0.952 22 C 0.060 3.940 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.038 0.962 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.627 -21.875 -0.874 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.264 5.264 13 C -0.075 4.075 14 C -0.071 4.071 15 N -0.258 5.258 16 C -0.074 4.074 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.019 4.019 21 H 0.066 0.934 22 C -0.069 4.069 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.475 -21.760 -0.868 22.719 hybrid contribution 0.382 1.027 -0.008 1.096 sum 6.857 -20.733 -0.877 21.855 Atomic orbital electron populations 1.69963 1.06059 1.26525 1.51089 1.25031 0.94842 0.99240 0.95424 0.86600 0.79877 0.83512 0.78059 1.20710 1.21256 1.19861 1.21259 0.93038 0.91061 1.50249 0.92701 1.19074 0.94043 0.91400 0.97076 1.21642 0.99135 0.92722 1.00686 1.22280 0.93641 0.90869 1.00235 1.62322 1.27294 1.02979 1.33842 1.22196 0.96012 0.98469 0.90791 1.22172 0.95810 0.88345 1.00731 1.62335 1.24338 1.03854 1.35292 1.22085 0.93353 0.91348 1.00639 1.21579 0.99344 0.96134 0.98383 1.21564 0.98110 0.98429 0.97717 1.21619 0.97982 0.93401 1.02095 1.21653 0.94982 0.94531 0.90758 0.93438 1.22182 0.94999 0.88741 1.00958 0.93058 0.96833 0.96623 0.92689 0.93497 0.95246 0.91280 0.94283 0.89453 0.94076 0.90545 0.95036 0.90911 0.91715 0.91140 0.91826 0.92282 0.91192 0.91394 0.94394 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.22 5.10 -26.73 -0.14 -2.35 16 11 C 0.06 1.03 4.95 -3.83 -0.02 1.01 16 12 N -0.54 -8.57 4.72 -234.53 -1.11 -9.68 16 13 C 0.05 0.79 5.42 -3.80 -0.02 0.76 16 14 C 0.06 0.72 5.53 -3.74 -0.02 0.70 16 15 N -0.53 -6.35 4.71 -226.29 -1.07 -7.41 16 16 C 0.05 0.52 5.37 -3.79 -0.02 0.50 16 17 C -0.12 -0.97 6.10 -26.68 -0.16 -1.13 16 18 C -0.12 -1.00 6.01 -26.63 -0.16 -1.16 16 19 C -0.11 -1.09 5.30 -26.63 -0.14 -1.23 16 20 C 0.09 1.07 2.35 -67.58 -0.16 0.91 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 C 0.06 0.81 4.80 -3.78 -0.02 0.80 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.98 6.50 -51.93 -0.34 0.64 16 28 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.07 1.24 8.02 -51.93 -0.42 0.82 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.34 6.34 -51.93 -0.33 1.01 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.54 8.14 -51.92 -0.42 0.11 16 43 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -30.33 327.32 -11.16 -41.49 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -8.22 Total: -5.12 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.41 Total: -14.52 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -1.44 Total: -43.73 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.33 -11.16 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226201227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.004 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds