Wall clock time and date at job start Mon Mar 30 2020 04:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00172 * 2 1 4 4 H 1.48493 * 109.47088 * 270.00070 * 3 2 1 5 5 H 1.48498 * 109.46764 * 29.99688 * 3 2 1 6 6 H 1.48498 * 109.47030 * 149.99668 * 3 2 1 7 7 C 1.37884 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47222 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47172 * 180.02562 * 11 10 9 13 13 C 1.47023 * 111.00186 * 293.35055 * 12 11 10 14 14 C 1.52924 * 109.05437 * 176.26008 * 13 12 11 15 15 N 1.47128 * 109.74983 * 58.81461 * 14 13 12 16 16 C 1.47046 * 109.88006 * 177.86455 * 15 14 13 17 17 C 1.52915 * 109.88259 * 184.75456 * 16 15 14 18 18 C 1.53182 * 109.00063 * 300.39992 * 17 16 15 19 19 C 1.53009 * 108.97478 * 58.22159 * 18 17 16 20 20 C 1.46829 * 111.17788 * 301.58118 * 15 14 13 21 21 H 1.08997 * 109.52261 * 297.24112 * 20 15 14 22 22 C 1.46840 * 111.00328 * 169.99788 * 12 11 10 23 23 H 0.96996 * 120.00301 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.46939 * 59.99547 * 9 7 2 25 25 H 1.08997 * 109.46876 * 300.00410 * 9 7 2 26 26 H 1.08998 * 109.46819 * 60.00141 * 10 9 7 27 27 H 1.08997 * 109.46789 * 300.00218 * 10 9 7 28 28 H 1.08998 * 109.47134 * 59.99733 * 11 10 9 29 29 H 1.09005 * 109.47199 * 300.00086 * 11 10 9 30 30 H 1.09003 * 109.54237 * 296.12529 * 13 12 11 31 31 H 1.09001 * 109.54409 * 56.30129 * 13 12 11 32 32 H 1.08997 * 109.42124 * 298.73381 * 14 13 12 33 33 H 1.09000 * 109.42983 * 178.90160 * 14 13 12 34 34 H 1.09002 * 109.40484 * 64.63570 * 16 15 14 35 35 H 1.09000 * 109.33784 * 304.83825 * 16 15 14 36 36 H 1.08999 * 109.55487 * 180.54044 * 17 16 15 37 37 H 1.09002 * 109.54794 * 60.24970 * 17 16 15 38 38 H 1.09002 * 109.57253 * 178.10239 * 18 17 16 39 39 H 1.08998 * 109.56770 * 298.34833 * 18 17 16 40 40 H 1.09001 * 109.44587 * 62.17288 * 19 18 17 41 41 H 1.08997 * 109.44650 * 182.07504 * 19 18 17 42 42 H 1.09007 * 109.41948 * 63.14341 * 22 12 11 43 43 H 1.09001 * 109.37592 * 303.29481 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 7 2.4349 -6.1036 0.0005 13 6 3.1917 -6.1505 -1.2591 14 6 4.2334 -7.2669 -1.1743 15 7 3.5643 -8.5536 -0.9269 16 6 4.5586 -9.6364 -0.8957 17 6 3.8534 -10.9861 -0.7567 18 6 3.0382 -10.9917 0.5401 19 6 2.0337 -9.8382 0.5013 20 6 2.7791 -8.5133 0.3131 21 1 3.4442 -8.3454 1.1602 22 6 1.7506 -7.3810 0.2380 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8539 -5.0446 -0.8903 29 1 0.8533 -5.0451 0.8897 30 1 2.5106 -6.3496 -2.0865 31 1 3.6914 -5.1953 -1.4200 32 1 4.9256 -7.0556 -0.3592 33 1 4.7853 -7.3199 -2.1128 34 1 5.2282 -9.4889 -0.0483 35 1 5.1360 -9.6230 -1.8201 36 1 4.5955 -11.7839 -0.7245 37 1 3.1880 -11.1392 -1.6064 38 1 2.5044 -11.9377 0.6318 39 1 3.7064 -10.8654 1.3919 40 1 1.3438 -9.9856 -0.3296 41 1 1.4744 -9.8124 1.4365 42 1 1.0549 -7.5767 -0.5781 43 1 1.2010 -7.3275 1.1778 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226201227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:48 Heat of formation + Delta-G solvation = -34.818183 kcal Electronic energy + Delta-G solvation = -19028.807526 eV Core-core repulsion = 16299.683392 eV Total energy + Delta-G solvation = -2729.124134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94365 -38.18918 -35.81817 -34.59599 -33.58352 -32.05373 -30.24496 -28.49834 -25.91754 -24.79787 -23.98850 -23.55422 -21.71226 -20.82327 -20.60296 -18.49359 -17.11221 -16.71345 -16.44830 -16.32553 -15.79305 -15.69178 -15.28673 -14.98991 -14.77685 -14.37386 -14.15758 -13.97163 -13.60478 -13.20954 -12.90581 -12.74550 -12.62281 -12.57943 -12.44892 -12.33362 -12.06925 -11.96776 -11.58221 -11.50827 -11.40866 -11.29030 -11.19289 -10.85240 -10.55320 -9.41333 -9.25555 -8.20458 -6.31629 1.39695 1.41374 1.52724 2.40683 2.87069 2.90144 3.12548 3.75335 3.83513 3.92421 4.08735 4.11133 4.22347 4.28113 4.32933 4.37159 4.45224 4.58162 4.59009 4.63407 4.69636 4.79276 4.82019 4.86367 4.91651 4.94444 5.04050 5.04870 5.08390 5.11186 5.22496 5.24809 5.30673 5.48959 5.51017 5.72805 5.84924 5.97583 6.02345 6.17606 6.21340 6.27537 6.84987 7.37553 8.91605 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.054170 B = 0.003570 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.767397 B = 7840.818841 C = 8176.103102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.069 3.931 12 N -0.546 5.546 13 C 0.053 3.947 14 C 0.064 3.936 15 N -0.541 5.541 16 C 0.052 3.948 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.109 4.109 20 C 0.093 3.907 21 H 0.037 0.963 22 C 0.059 3.941 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.008 1.008 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 -22.956 -0.925 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.125 4.125 11 C -0.059 4.059 12 N -0.270 5.270 13 C -0.075 4.075 14 C -0.065 4.065 15 N -0.267 5.267 16 C -0.076 4.076 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.016 4.016 21 H 0.055 0.945 22 C -0.069 4.069 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.868 -22.867 -0.921 24.200 hybrid contribution -0.074 1.336 0.000 1.338 sum 7.794 -21.531 -0.921 22.917 Atomic orbital electron populations 1.70094 1.07821 1.27804 1.51705 1.26002 0.95797 1.03420 0.94686 0.85428 0.78657 0.78313 0.78544 1.19680 1.20638 1.18756 1.21686 0.93510 0.92378 1.50532 0.92293 1.18965 0.94376 0.93070 0.94717 1.21375 0.97956 0.92625 1.00570 1.22004 0.93494 0.90425 0.99964 1.62287 1.26837 1.03286 1.34611 1.22217 0.96238 0.99087 0.89979 1.22107 0.94895 0.88027 1.01432 1.62374 1.25075 1.04045 1.35167 1.22185 0.93045 0.91260 1.01083 1.21579 0.99628 0.95732 0.98156 1.21567 0.97852 0.98401 0.97775 1.21604 0.98120 0.92637 1.02373 1.21627 0.94508 0.94973 0.90472 0.94499 1.22265 0.95506 0.88151 1.00959 0.92736 0.99199 0.98961 0.93076 0.93146 0.95852 0.91317 0.94897 0.90416 0.94707 0.88785 0.95187 0.89964 0.89813 0.91538 0.90267 0.92181 0.91597 0.90529 0.94870 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.79 5.10 30.59 0.16 -3.64 16 11 C 0.07 2.53 4.95 86.30 0.43 2.96 16 12 N -0.55 -17.25 4.72 -895.91 -4.23 -21.48 16 13 C 0.05 1.54 5.42 86.25 0.47 2.00 16 14 C 0.06 1.51 5.53 86.23 0.48 1.99 16 15 N -0.54 -12.08 4.71 -869.85 -4.10 -16.18 16 16 C 0.05 0.90 5.37 86.25 0.46 1.36 16 17 C -0.11 -1.58 6.10 30.63 0.19 -1.40 16 18 C -0.12 -1.67 6.01 30.66 0.18 -1.48 16 19 C -0.11 -1.92 5.30 30.66 0.16 -1.75 16 20 C 0.09 2.11 2.35 45.04 0.11 2.22 16 21 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 22 C 0.06 1.58 4.80 86.36 0.41 2.00 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 25 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 2.13 6.50 -2.39 -0.02 2.12 16 28 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 29 H 0.07 2.51 8.02 -2.38 -0.02 2.49 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 2.37 6.34 -2.39 -0.02 2.36 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 Total: -1.00 -64.90 327.32 -1.20 -66.10 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.93 Total: 7.49 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.89 Total: -25.37 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -8.04 Total: -95.28 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.90 -1.20 -66.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226201227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.281 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds