Wall clock time and date at job start Mon Mar 30 2020 04:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46842 * 111.00424 * 45.78638 * 11 10 9 13 13 C 1.53031 * 109.55289 * 185.84421 * 12 11 10 14 14 C 1.53135 * 109.25953 * 300.80437 * 13 12 11 15 15 C 1.53064 * 109.14483 * 57.60868 * 14 13 12 16 16 C 1.53053 * 109.46638 * 182.33351 * 15 14 13 17 17 C 1.53130 * 109.15032 * 297.64866 * 16 15 14 18 18 C 1.53036 * 109.27497 * 302.42215 * 17 16 15 19 19 N 1.46853 * 109.55408 * 59.17424 * 18 17 16 20 20 C 1.46869 * 111.18233 * 298.24903 * 19 18 17 21 21 C 1.46861 * 110.99934 * 169.99783 * 11 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.09005 * 109.45701 * 305.87427 * 12 11 10 28 28 H 1.09007 * 109.45783 * 65.81765 * 12 11 10 29 29 H 1.09003 * 109.50468 * 180.87266 * 13 12 11 30 30 H 1.08992 * 109.54428 * 60.76134 * 13 12 11 31 31 H 1.09003 * 109.52375 * 297.70376 * 14 13 12 32 32 H 1.09006 * 109.52216 * 177.50703 * 14 13 12 33 33 H 1.08998 * 109.52603 * 57.55138 * 16 15 14 34 34 H 1.09008 * 109.52598 * 177.74617 * 16 15 14 35 35 H 1.08996 * 109.50893 * 182.48388 * 17 16 15 36 36 H 1.08998 * 109.53815 * 62.37761 * 17 16 15 37 37 H 1.09003 * 109.45898 * 299.14923 * 18 17 16 38 38 H 1.09000 * 109.45821 * 179.19413 * 18 17 16 39 39 H 1.00898 * 111.00140 * 174.16703 * 19 18 17 40 40 H 1.08998 * 109.46461 * 301.68113 * 20 19 18 41 41 H 1.09000 * 109.46542 * 181.69400 * 20 19 18 42 42 H 1.08997 * 109.46995 * 294.25245 * 21 11 10 43 43 H 1.08999 * 109.46744 * 54.23038 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.4199 -4.9074 -0.9997 13 6 -0.4109 -6.1867 -0.8779 14 6 0.4910 -7.4000 -1.1221 15 6 1.6456 -7.3775 -0.1175 16 6 2.5838 -8.5550 -0.3923 17 6 1.8175 -9.8655 -0.1915 18 6 1.2561 -9.9094 1.2315 19 7 0.3637 -8.7625 1.4434 20 6 1.0887 -7.4930 1.3028 21 6 2.4168 -6.0641 -0.2599 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 -0.2161 -4.0421 -0.8128 28 1 0.8380 -4.8402 -2.0042 29 1 -1.2109 -6.1730 -1.6182 30 1 -0.8411 -6.2484 0.1217 31 1 0.8893 -7.3596 -2.1360 32 1 -0.0867 -8.3153 -0.9928 33 1 2.9475 -8.4992 -1.4183 34 1 3.4276 -8.5171 0.2968 35 1 2.4918 -10.7083 -0.3428 36 1 0.9980 -9.9219 -0.9079 37 1 2.0771 -9.8678 1.9472 38 1 0.6978 -10.8348 1.3731 39 1 -0.0928 -8.8206 2.3413 40 1 1.9101 -7.4625 2.0186 41 1 0.4085 -6.6631 1.4948 42 1 2.8265 -5.9909 -1.2673 43 1 3.2301 -6.0400 0.4654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228105225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:39 Heat of formation + Delta-G solvation = -32.933302 kcal Electronic energy + Delta-G solvation = -19717.726853 eV Core-core repulsion = 16988.684454 eV Total energy + Delta-G solvation = -2729.042399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23911 -38.34566 -35.58682 -34.17248 -33.05088 -31.98332 -30.93095 -27.11577 -26.89019 -24.75361 -24.51168 -23.45752 -22.11781 -20.78945 -18.95914 -18.62585 -17.54845 -16.60193 -16.46163 -15.97920 -15.45551 -15.37906 -15.27806 -15.09518 -14.58089 -14.35695 -14.03344 -13.94568 -13.54801 -13.22936 -13.13356 -12.82945 -12.78454 -12.55270 -12.43590 -12.07322 -11.82809 -11.81247 -11.60388 -11.47342 -11.22938 -11.07886 -10.90884 -10.75145 -10.52385 -9.26406 -9.12928 -8.20542 -6.31976 1.39331 1.42543 1.50516 2.39793 3.06734 3.12621 3.34570 3.83070 3.86200 3.89552 4.19582 4.22011 4.26935 4.39237 4.42908 4.51986 4.57956 4.65559 4.67089 4.71504 4.77116 4.83977 4.89331 4.95161 5.03590 5.06219 5.07755 5.11738 5.17900 5.23641 5.34792 5.37886 5.44630 5.60206 5.60558 5.67079 5.78650 6.09961 6.18910 6.34134 6.36407 6.58868 6.84206 7.36889 8.91172 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.046513 B = 0.004387 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.831384 B = 6381.674276 C = 6510.115293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.033 3.967 10 C 0.078 3.922 11 N -0.539 5.539 12 C 0.054 3.946 13 C -0.107 4.107 14 C -0.091 4.091 15 C -0.044 4.044 16 C -0.109 4.109 17 C -0.113 4.113 18 C 0.057 3.943 19 N -0.691 5.691 20 C 0.083 3.917 21 C 0.065 3.935 22 H 0.264 0.736 23 H -0.007 1.007 24 H 0.000 1.000 25 H 0.016 0.984 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.017 0.983 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.347 0.653 40 H 0.018 0.982 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -20.632 -0.011 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.050 4.050 11 N -0.263 5.263 12 C -0.074 4.074 13 C -0.145 4.145 14 C -0.128 4.128 15 C -0.045 4.045 16 C -0.147 4.147 17 C -0.151 4.151 18 C -0.072 4.072 19 N -0.323 5.323 20 C -0.047 4.047 21 C -0.063 4.063 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.018 0.982 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.104 0.896 39 H 0.166 0.834 40 H 0.036 0.964 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.445 -20.589 -0.190 20.734 hybrid contribution 1.114 1.553 0.076 1.912 sum 3.559 -19.036 -0.114 19.366 Atomic orbital electron populations 1.70098 1.07772 1.27853 1.51279 1.25943 0.95752 1.03241 0.94550 0.85496 0.78284 0.78067 0.79157 1.19252 1.20692 1.19146 1.21599 0.93467 0.92368 1.51156 0.92361 1.19033 0.94221 0.92013 0.95205 1.21974 0.95782 0.88544 0.98682 1.61981 1.11899 1.02797 1.49665 1.22133 0.93796 0.99211 0.92305 1.21557 0.97599 0.93137 1.02198 1.21482 0.95986 0.98316 0.97049 1.20497 0.95348 0.92924 0.95732 1.21601 0.97334 0.94071 1.01710 1.21595 0.99854 0.96778 0.96877 1.21977 0.94892 0.93854 0.96526 1.60262 1.32141 1.01700 1.38184 1.21710 0.96345 0.91828 0.94791 1.22166 0.94684 0.90513 0.98984 0.92724 0.98874 0.98162 0.96616 0.92011 0.92535 0.96456 0.91150 0.91601 0.93117 0.89637 0.91561 0.92171 0.90124 0.91212 0.95588 0.89616 0.83429 0.96398 0.91276 0.95503 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.78 4.22 29.85 0.13 1.90 16 10 C 0.08 3.44 5.21 86.30 0.45 3.89 16 11 N -0.54 -20.27 4.11 -896.47 -3.68 -23.96 16 12 C 0.05 1.99 4.85 86.32 0.42 2.41 16 13 C -0.11 -3.16 5.74 30.65 0.18 -2.99 16 14 C -0.09 -2.26 4.30 30.66 0.13 -2.13 16 15 C -0.04 -1.09 0.51 -52.15 -0.03 -1.12 16 16 C -0.11 -2.14 4.79 30.66 0.15 -1.99 16 17 C -0.11 -1.83 5.74 30.65 0.18 -1.65 16 18 C 0.06 0.92 6.55 86.32 0.57 1.49 16 19 N -0.69 -13.87 6.09 -514.03 -3.13 -17.00 16 20 C 0.08 2.07 4.84 86.31 0.42 2.49 16 21 C 0.06 1.97 4.15 86.30 0.36 2.33 16 22 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 23 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 24 H 0.00 0.01 6.21 -2.39 -0.01 -0.01 16 25 H 0.02 0.69 8.08 -2.38 -0.02 0.67 16 26 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.06 2.48 5.81 -2.38 -0.01 2.47 16 28 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.04 6.57 -2.39 -0.02 2.02 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.98 6.07 -2.38 -0.01 1.97 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.19 6.64 -2.39 -0.02 1.17 16 37 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.35 6.10 8.90 -89.70 -0.80 5.30 16 40 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.07 2.09 6.00 -2.39 -0.01 2.07 16 42 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 Total: -1.00 -63.76 315.98 -0.70 -64.46 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.17 Total: 13.17 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 3.63 Total: -26.41 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -6.53 Total: -98.06 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.76 -0.70 -64.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228105225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.522 kcal (2) G-P(sol) polarization free energy of solvation -63.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds