Wall clock time and date at job start Mon Mar 30 2020 04:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46836 * 179.97438 * 10 9 7 12 12 C 1.46855 * 110.99959 * 66.04421 * 11 10 9 13 13 C 1.53034 * 109.54439 * 174.15260 * 12 11 10 14 14 C 1.53132 * 109.26565 * 59.20295 * 13 12 11 15 15 C 1.53070 * 109.15293 * 302.39894 * 14 13 12 16 16 C 1.53057 * 109.45648 * 177.62448 * 15 14 13 17 17 C 1.53133 * 109.14727 * 62.34519 * 16 15 14 18 18 C 1.53038 * 109.26779 * 57.58801 * 17 16 15 19 19 N 1.46841 * 109.55922 * 300.82234 * 18 17 16 20 20 C 1.46867 * 111.18882 * 61.74085 * 19 18 17 21 21 C 1.46862 * 111.00346 * 301.83239 * 11 10 9 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.08999 * 109.46737 * 299.99057 * 10 9 7 26 26 H 1.08993 * 109.47411 * 59.99528 * 10 9 7 27 27 H 1.08995 * 109.45612 * 294.17524 * 12 11 10 28 28 H 1.09002 * 109.45736 * 54.13185 * 12 11 10 29 29 H 1.08996 * 109.50767 * 179.14073 * 13 12 11 30 30 H 1.09004 * 109.50579 * 299.26660 * 13 12 11 31 31 H 1.08997 * 109.52374 * 62.29941 * 14 13 12 32 32 H 1.08997 * 109.52469 * 182.43487 * 14 13 12 33 33 H 1.09003 * 109.52476 * 182.24296 * 16 15 14 34 34 H 1.09003 * 109.52641 * 302.43968 * 16 15 14 35 35 H 1.08994 * 109.50637 * 177.52827 * 17 16 15 36 36 H 1.08999 * 109.50009 * 297.61379 * 17 16 15 37 37 H 1.09004 * 109.45872 * 60.84944 * 18 17 16 38 38 H 1.08997 * 109.45667 * 180.79549 * 18 17 16 39 39 H 1.00896 * 110.99980 * 185.82955 * 19 18 17 40 40 H 1.09001 * 109.46053 * 178.31349 * 20 19 18 41 41 H 1.08999 * 109.46374 * 58.33754 * 20 19 18 42 42 H 1.08994 * 109.46206 * 305.77032 * 21 11 10 43 43 H 1.09004 * 109.45789 * 65.73502 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 7 1.5108 -4.9342 -0.0116 12 6 0.7605 -5.1092 -1.2619 13 6 0.1280 -6.5025 -1.2886 14 6 -0.8067 -6.6562 -0.0854 15 6 -0.0118 -6.4204 1.2013 16 6 -0.9519 -6.5139 2.4056 17 6 -1.5413 -7.9256 2.4743 18 6 -0.4028 -8.9443 2.5646 19 7 0.4672 -8.8148 1.3889 20 6 1.0820 -7.4824 1.3277 21 6 0.6261 -5.0308 1.1566 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 2.8685 -3.6024 -0.9044 26 1 2.8753 -3.6063 0.8755 27 1 -0.0225 -4.3537 -1.3241 28 1 1.4372 -5.0013 -2.1096 29 1 -0.4413 -6.6261 -2.2098 30 1 0.9114 -7.2589 -1.2398 31 1 -1.6127 -5.9258 -0.1547 32 1 -1.2263 -7.6621 -0.0763 33 1 -0.3949 -6.3069 3.3194 34 1 -1.7574 -5.7877 2.2963 35 1 -2.1776 -8.0119 3.3550 36 1 -2.1317 -8.1173 1.5784 37 1 0.1782 -8.7603 3.4683 38 1 -0.8186 -9.9513 2.5995 39 1 1.1704 -9.5383 1.3780 40 1 1.7436 -7.4271 0.4632 41 1 1.6568 -7.3055 2.2367 42 1 1.2054 -4.8676 2.0653 43 1 -0.1555 -4.2745 1.0837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228105235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:42 Heat of formation + Delta-G solvation = -20.887455 kcal Electronic energy + Delta-G solvation = -19954.437411 eV Core-core repulsion = 17225.917359 eV Total energy + Delta-G solvation = -2728.520052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.14192 -37.18252 -34.06274 -32.62281 -31.98716 -30.85965 -28.60867 -26.00294 -24.85808 -23.78156 -22.97137 -22.06079 -21.36137 -19.42789 -17.90477 -16.87723 -16.48597 -15.24034 -14.66046 -14.45899 -14.33888 -14.10140 -13.80184 -13.72387 -13.29789 -13.14780 -12.90430 -12.58389 -12.12349 -11.81713 -11.70581 -11.48670 -11.43923 -10.87989 -10.85335 -10.76961 -10.50646 -10.37468 -10.12489 -10.03107 -9.90038 -9.76369 -9.73219 -8.60261 -8.41051 -8.31794 -7.53522 -6.36684 -4.05841 3.42827 3.46590 3.62335 4.21393 4.43825 4.55985 4.84202 4.88261 4.95327 5.11521 5.27779 5.38480 5.40385 5.47506 5.53172 5.58308 5.73077 5.75992 5.84504 5.91196 5.94524 5.99686 6.07111 6.12809 6.16666 6.21451 6.25745 6.37456 6.42837 6.43636 6.52659 6.65015 6.70390 6.81123 7.05586 7.33398 7.36717 7.38455 7.64774 7.75945 8.25105 8.45737 8.87838 9.66848 11.03489 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037580 B = 0.004898 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.903486 B = 5715.288868 C = 5897.701291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.599 4.599 8 H 0.049 0.951 9 C -0.022 4.022 10 C 0.065 3.935 11 N -0.539 5.539 12 C 0.052 3.948 13 C -0.113 4.113 14 C -0.100 4.100 15 C -0.048 4.048 16 C -0.113 4.113 17 C -0.116 4.116 18 C 0.058 3.942 19 N -0.689 5.689 20 C 0.077 3.923 21 C 0.065 3.935 22 H 0.267 0.733 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.338 0.662 40 H 0.090 0.910 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 -17.496 3.048 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.638 4.638 8 H 0.067 0.933 9 C -0.060 4.060 10 C -0.062 4.062 11 N -0.262 5.262 12 C -0.076 4.076 13 C -0.151 4.151 14 C -0.137 4.137 15 C -0.049 4.049 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.071 4.071 19 N -0.320 5.320 20 C -0.052 4.052 21 C -0.064 4.064 22 H 0.077 0.923 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.155 0.845 40 H 0.108 0.892 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.407 -16.070 2.649 16.347 hybrid contribution 0.280 -0.906 0.750 1.209 sum -1.127 -16.976 3.399 17.349 Atomic orbital electron populations 1.70760 1.06919 1.30481 1.46823 1.25856 0.96537 1.02770 0.93751 0.83515 0.74694 0.75097 0.76737 1.21477 1.21444 1.21012 1.22015 0.94281 0.91955 1.55581 0.93262 1.19787 0.95650 0.94618 0.95967 1.22168 0.96548 0.86423 1.01088 1.62292 1.27208 1.35081 1.01608 1.22056 0.96763 0.96134 0.92629 1.21592 0.98792 0.97211 0.97487 1.21521 0.97159 1.01604 0.93434 1.20536 0.94793 0.94458 0.95073 1.21624 0.98943 0.96768 0.97806 1.21593 0.97327 0.94579 1.01904 1.21888 0.94899 0.99093 0.91229 1.60285 1.25039 1.04987 1.41683 1.21898 0.95274 0.87167 1.00855 1.22035 0.95546 0.94742 0.94034 0.92252 0.97350 0.97444 0.91951 0.92013 0.94588 0.91515 0.92420 0.91244 0.93176 0.90785 0.92353 0.91800 0.92052 0.91001 0.95667 0.91380 0.84491 0.89173 0.95882 0.91611 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.65 55.43 0.76 -27.71 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.60 -17.33 9.11 -34.44 -0.31 -17.64 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C -0.02 -0.57 3.59 -27.88 -0.10 -0.67 16 10 C 0.06 1.39 5.30 -3.83 -0.02 1.37 16 11 N -0.54 -9.75 4.17 -234.70 -0.98 -10.73 16 12 C 0.05 0.90 5.05 -3.83 -0.02 0.88 16 13 C -0.11 -1.60 5.74 -26.65 -0.15 -1.75 16 14 C -0.10 -1.38 4.30 -26.63 -0.11 -1.49 16 15 C -0.05 -0.67 0.51 -154.47 -0.08 -0.75 16 16 C -0.11 -1.43 4.79 -26.63 -0.13 -1.56 16 17 C -0.12 -1.24 5.74 -26.64 -0.15 -1.39 16 18 C 0.06 0.58 6.55 -3.84 -0.03 0.56 16 19 N -0.69 -7.50 6.09 -113.84 -0.69 -8.20 16 20 C 0.08 0.99 4.84 -3.85 -0.02 0.97 16 21 C 0.07 1.13 3.56 -3.86 -0.01 1.11 16 22 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 23 H 0.01 0.23 6.37 -51.93 -0.33 -0.10 16 24 H 0.01 0.20 6.55 -51.93 -0.34 -0.14 16 25 H 0.06 1.34 8.06 -51.93 -0.42 0.92 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.04 0.70 6.75 -51.93 -0.35 0.35 16 28 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.97 6.57 -51.93 -0.34 0.62 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.98 6.08 -51.93 -0.32 0.66 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.79 6.64 -51.93 -0.34 0.45 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.34 3.11 8.90 -39.29 -0.35 2.76 16 40 H 0.09 1.26 6.01 -51.93 -0.31 0.95 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 43 H 0.04 0.83 6.60 -51.93 -0.34 0.48 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -30.25 312.62 -10.11 -40.36 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.59 Total: 0.97 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -1.24 Total: -20.03 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.91 Total: -46.63 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.25 -10.11 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228105235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.476 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds