Wall clock time and date at job start Mon Mar 30 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48504 * 109.46982 * 270.00016 * 3 2 1 5 5 H 1.48500 * 109.47207 * 29.99962 * 3 2 1 6 6 H 1.48494 * 109.47145 * 150.00136 * 3 2 1 7 7 C 1.37876 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00133 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47062 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46956 * 180.77449 * 11 10 9 13 13 C 1.46900 * 110.99804 * 196.49534 * 12 11 10 14 14 C 1.53004 * 109.47101 * 162.95655 * 13 12 11 15 15 H 1.08994 * 110.00588 * 58.10044 * 14 13 12 16 16 C 1.54316 * 109.89051 * 296.98016 * 14 13 12 17 17 C 1.55130 * 103.02002 * 218.30895 * 16 14 13 18 18 C 1.54899 * 101.65494 * 35.65637 * 17 16 14 19 19 N 1.47446 * 109.88619 * 179.21026 * 14 13 12 20 20 C 1.46894 * 110.99955 * 72.54396 * 12 11 10 21 21 C 1.53003 * 117.49522 * 266.11289 * 20 12 11 22 22 C 1.52999 * 117.49772 * 197.45334 * 20 12 11 23 23 H 0.97003 * 120.00422 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47044 * 59.99519 * 9 7 2 25 25 H 1.09003 * 109.46971 * 300.00088 * 9 7 2 26 26 H 1.08992 * 109.47751 * 60.00151 * 10 9 7 27 27 H 1.09003 * 109.47033 * 299.99904 * 10 9 7 28 28 H 1.09003 * 109.47184 * 60.77535 * 11 10 9 29 29 H 1.09000 * 109.47019 * 300.77355 * 11 10 9 30 30 H 1.09004 * 109.47294 * 42.95636 * 13 12 11 31 31 H 1.08997 * 109.47473 * 282.95848 * 13 12 11 32 32 H 1.09003 * 110.70487 * 336.69447 * 16 14 13 33 33 H 1.09005 * 110.70571 * 99.92532 * 16 14 13 34 34 H 1.09000 * 110.99400 * 277.55857 * 17 16 14 35 35 H 1.09008 * 110.98953 * 153.74913 * 17 16 14 36 36 H 1.09000 * 110.37838 * 204.09718 * 18 17 16 37 37 H 1.08999 * 110.37796 * 81.75453 * 18 17 16 38 38 H 1.00896 * 111.00278 * 356.15009 * 19 14 13 39 39 H 1.09002 * 115.55185 * 51.78550 * 20 12 11 40 40 H 1.08992 * 117.50010 * 359.97438 * 21 20 12 41 41 H 1.08999 * 117.49399 * 145.02574 * 21 20 12 42 42 H 1.08999 * 117.49999 * 214.97613 * 22 20 12 43 43 H 1.09006 * 117.49851 * 0.02562 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6367 -0.0014 11 6 5.5514 -2.6367 -0.0001 12 7 6.0410 -4.0216 -0.0202 13 6 7.4559 -4.0854 0.3694 14 6 7.8161 -5.5233 0.7488 15 1 7.6160 -6.1912 -0.0889 16 6 6.9948 -5.9631 1.9789 17 6 8.0101 -6.8072 2.7934 18 6 9.3326 -6.0447 2.5309 19 7 9.2400 -5.6014 1.1235 20 6 5.8296 -4.6356 -1.3378 21 6 4.5477 -5.4455 -1.5423 22 6 5.8955 -6.1617 -1.4248 23 1 -0.4851 0.8400 -0.0004 24 1 3.8744 -0.6809 0.8905 25 1 3.8751 -0.6798 -0.8895 26 1 3.6584 -3.1495 -0.8920 27 1 3.6576 -3.1515 0.8879 28 1 5.9140 -2.1361 0.8977 29 1 5.9154 -2.1098 -0.8821 30 1 7.6275 -3.4304 1.2237 31 1 8.0777 -3.7634 -0.4658 32 1 6.6660 -5.0966 2.5527 33 1 6.1429 -6.5719 1.6759 34 1 8.0649 -7.8269 2.4121 35 1 7.7601 -6.8017 3.8544 36 1 10.1865 -6.7090 2.6641 37 1 9.4129 -5.1843 3.1952 38 1 9.6974 -4.7115 0.9938 39 1 6.2063 -4.0664 -2.1877 40 1 3.8615 -5.5230 -0.6991 41 1 4.0813 -5.4094 -2.5268 42 1 6.3150 -6.5965 -2.3320 43 1 6.0952 -6.7102 -0.5041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236167033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:10 Heat of formation + Delta-G solvation = 22.644786 kcal Electronic energy + Delta-G solvation = -19091.183360 eV Core-core repulsion = 16364.551007 eV Total energy + Delta-G solvation = -2726.632352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.51370 -37.66830 -34.75081 -33.35351 -31.71228 -30.34016 -29.59524 -26.69080 -24.24786 -22.70614 -22.33562 -21.27408 -20.77087 -19.97957 -19.80748 -16.80596 -16.40832 -16.09199 -15.43344 -15.31947 -14.65300 -14.08226 -13.96241 -13.48208 -13.34132 -12.98712 -12.75182 -12.44296 -12.12262 -11.98678 -11.63647 -11.58066 -11.37477 -11.10502 -11.07743 -10.92348 -10.78044 -10.67311 -10.12684 -10.04021 -9.86951 -9.58252 -9.54478 -9.14301 -8.55523 -8.51186 -8.17715 -6.01580 -3.98847 3.31362 3.38684 3.42409 3.73975 3.92265 4.28099 4.47184 4.64696 4.65985 4.76606 5.06099 5.06695 5.10899 5.21620 5.32247 5.33578 5.39836 5.46454 5.57237 5.64696 5.71717 5.75209 5.80036 5.83682 5.90951 5.96792 6.06493 6.17760 6.20201 6.29245 6.36383 6.59621 6.61215 6.76128 6.96565 7.14520 7.26532 7.31144 7.41546 7.50932 7.83577 8.58436 9.04444 9.61387 11.12106 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028451 B = 0.004424 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.918850 B = 6328.075916 C = 6704.394868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.094 4.094 11 C 0.058 3.942 12 N -0.505 5.505 13 C 0.044 3.956 14 C 0.070 3.930 15 H 0.098 0.902 16 C -0.122 4.122 17 C -0.134 4.134 18 C 0.044 3.956 19 N -0.680 5.680 20 C 0.009 3.991 21 C -0.157 4.157 22 C -0.180 4.180 23 H 0.262 0.738 24 H 0.013 0.987 25 H 0.007 0.993 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.335 0.665 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.071 -12.182 1.665 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.132 4.132 11 C -0.069 4.069 12 N -0.230 5.230 13 C -0.085 4.085 14 C -0.040 4.040 15 H 0.115 0.885 16 C -0.161 4.161 17 C -0.172 4.172 18 C -0.085 4.085 19 N -0.310 5.310 20 C -0.100 4.100 21 C -0.194 4.194 22 C -0.217 4.217 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.026 0.974 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.780 -12.964 1.729 22.072 hybrid contribution 0.532 2.386 -0.143 2.449 sum 18.312 -10.578 1.587 21.207 Atomic orbital electron populations 1.69915 1.06282 1.26781 1.51471 1.25034 0.94711 0.99111 0.94710 0.86781 0.80342 0.83740 0.78416 1.20390 1.21430 1.19122 1.21145 0.89513 0.94409 1.50332 0.91025 1.19560 0.97174 0.92538 0.95887 1.21431 0.90757 0.99196 1.01797 1.22325 0.98375 0.86289 0.99926 1.61775 1.16134 1.19448 1.25596 1.22599 0.89417 0.96916 0.99576 1.22601 0.86384 0.96157 0.98818 0.88466 1.22674 0.97796 0.99836 0.95776 1.22750 0.94766 0.99503 1.00224 1.22826 0.98387 0.98452 0.88838 1.62189 1.13392 1.34337 1.21099 1.22325 1.03772 0.92768 0.91162 1.23040 0.90873 1.02358 1.03134 1.23206 1.01735 0.93863 1.02902 0.92813 0.96879 0.97427 0.92364 0.92312 0.91589 0.95232 0.91385 0.94657 0.91061 0.90739 0.91030 0.91117 0.90704 0.94171 0.84877 0.90099 0.87822 0.88907 0.89165 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 10 C -0.09 -1.88 5.12 -26.73 -0.14 -2.02 16 11 C 0.06 0.95 4.98 -3.82 -0.02 0.93 16 12 N -0.51 -7.06 4.24 -226.64 -0.96 -8.02 16 13 C 0.04 0.52 4.11 -3.82 -0.02 0.51 16 14 C 0.07 0.76 3.09 -66.72 -0.21 0.55 16 15 H 0.10 1.12 4.72 -51.93 -0.25 0.88 16 16 C -0.12 -1.33 6.07 -24.92 -0.15 -1.48 16 17 C -0.13 -1.23 7.08 -24.60 -0.17 -1.41 16 18 C 0.04 0.40 7.57 -2.30 -0.02 0.38 16 19 N -0.68 -6.86 7.37 -103.81 -0.77 -7.63 16 20 C 0.01 0.11 4.41 -67.71 -0.30 -0.18 16 21 C -0.16 -2.05 9.04 -26.69 -0.24 -2.29 16 22 C -0.18 -2.03 8.64 -26.69 -0.23 -2.26 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 24 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 25 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 26 H 0.06 1.18 6.51 -51.93 -0.34 0.84 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 29 H 0.03 0.49 8.04 -51.93 -0.42 0.07 16 30 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 31 H 0.04 0.42 8.04 -51.93 -0.42 0.00 16 32 H 0.07 0.86 7.83 -51.93 -0.41 0.45 16 33 H 0.07 0.84 7.47 -51.93 -0.39 0.45 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.34 3.07 8.22 -39.29 -0.32 2.75 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.15 5.43 -51.93 -0.28 0.87 16 LS Contribution 329.05 15.07 4.96 4.96 Total: -1.00 -30.24 329.05 -10.47 -40.71 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.77 Total: 1.28 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -2.03 Total: -21.15 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.95 Total: -43.15 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.24 -10.47 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236167033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.357 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds