Wall clock time and date at job start Mon Mar 30 2020 04:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48504 * 109.46982 * 270.00016 * 3 2 1 5 5 H 1.48500 * 109.47207 * 29.99962 * 3 2 1 6 6 H 1.48494 * 109.47145 * 150.00136 * 3 2 1 7 7 C 1.37876 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00133 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47062 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46956 * 180.77449 * 11 10 9 13 13 C 1.46900 * 110.99804 * 196.49534 * 12 11 10 14 14 C 1.53004 * 109.47101 * 162.95655 * 13 12 11 15 15 H 1.08994 * 110.00588 * 58.10044 * 14 13 12 16 16 C 1.54316 * 109.89051 * 296.98016 * 14 13 12 17 17 C 1.55130 * 103.02002 * 218.30895 * 16 14 13 18 18 C 1.54899 * 101.65494 * 35.65637 * 17 16 14 19 19 N 1.47446 * 109.88619 * 179.21026 * 14 13 12 20 20 C 1.46894 * 110.99955 * 72.54396 * 12 11 10 21 21 C 1.53003 * 117.49522 * 266.11289 * 20 12 11 22 22 C 1.52999 * 117.49772 * 197.45334 * 20 12 11 23 23 H 0.97003 * 120.00422 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47044 * 59.99519 * 9 7 2 25 25 H 1.09003 * 109.46971 * 300.00088 * 9 7 2 26 26 H 1.08992 * 109.47751 * 60.00151 * 10 9 7 27 27 H 1.09003 * 109.47033 * 299.99904 * 10 9 7 28 28 H 1.09003 * 109.47184 * 60.77535 * 11 10 9 29 29 H 1.09000 * 109.47019 * 300.77355 * 11 10 9 30 30 H 1.09004 * 109.47294 * 42.95636 * 13 12 11 31 31 H 1.08997 * 109.47473 * 282.95848 * 13 12 11 32 32 H 1.09003 * 110.70487 * 336.69447 * 16 14 13 33 33 H 1.09005 * 110.70571 * 99.92532 * 16 14 13 34 34 H 1.09000 * 110.99400 * 277.55857 * 17 16 14 35 35 H 1.09008 * 110.98953 * 153.74913 * 17 16 14 36 36 H 1.09000 * 110.37838 * 204.09718 * 18 17 16 37 37 H 1.08999 * 110.37796 * 81.75453 * 18 17 16 38 38 H 1.00896 * 111.00278 * 356.15009 * 19 14 13 39 39 H 1.09002 * 115.55185 * 51.78550 * 20 12 11 40 40 H 1.08992 * 117.50010 * 359.97438 * 21 20 12 41 41 H 1.08999 * 117.49399 * 145.02574 * 21 20 12 42 42 H 1.08999 * 117.49999 * 214.97613 * 22 20 12 43 43 H 1.09006 * 117.49851 * 0.02562 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6367 -0.0014 11 6 5.5514 -2.6367 -0.0001 12 7 6.0410 -4.0216 -0.0202 13 6 7.4559 -4.0854 0.3694 14 6 7.8161 -5.5233 0.7488 15 1 7.6160 -6.1912 -0.0889 16 6 6.9948 -5.9631 1.9789 17 6 8.0101 -6.8072 2.7934 18 6 9.3326 -6.0447 2.5309 19 7 9.2400 -5.6014 1.1235 20 6 5.8296 -4.6356 -1.3378 21 6 4.5477 -5.4455 -1.5423 22 6 5.8955 -6.1617 -1.4248 23 1 -0.4851 0.8400 -0.0004 24 1 3.8744 -0.6809 0.8905 25 1 3.8751 -0.6798 -0.8895 26 1 3.6584 -3.1495 -0.8920 27 1 3.6576 -3.1515 0.8879 28 1 5.9140 -2.1361 0.8977 29 1 5.9154 -2.1098 -0.8821 30 1 7.6275 -3.4304 1.2237 31 1 8.0777 -3.7634 -0.4658 32 1 6.6660 -5.0966 2.5527 33 1 6.1429 -6.5719 1.6759 34 1 8.0649 -7.8269 2.4121 35 1 7.7601 -6.8017 3.8544 36 1 10.1865 -6.7090 2.6641 37 1 9.4129 -5.1843 3.1952 38 1 9.6974 -4.7115 0.9938 39 1 6.2063 -4.0664 -2.1877 40 1 3.8615 -5.5230 -0.6991 41 1 4.0813 -5.4094 -2.5268 42 1 6.3150 -6.5965 -2.3320 43 1 6.0952 -6.7102 -0.5041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236167033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:09 Heat of formation + Delta-G solvation = 2.597625 kcal Electronic energy + Delta-G solvation = -19092.052670 eV Core-core repulsion = 16364.551007 eV Total energy + Delta-G solvation = -2727.501663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46676 -38.62284 -36.24415 -34.97767 -33.48504 -31.20512 -30.73048 -28.31026 -25.34985 -24.24868 -23.33223 -22.18543 -22.02246 -21.22690 -20.95619 -18.89574 -17.44116 -16.98378 -16.58967 -16.36791 -16.24521 -15.51194 -15.33463 -14.77811 -14.57952 -14.18048 -14.02547 -13.76235 -13.38824 -13.24621 -13.01582 -12.74352 -12.57264 -12.39817 -12.23309 -12.01179 -11.90059 -11.79342 -11.63233 -11.53130 -11.43076 -11.29985 -10.96091 -10.88654 -10.75578 -9.38202 -9.25368 -8.29266 -6.33238 1.34705 1.36843 1.48968 2.35978 2.70899 2.90560 3.05968 3.45923 3.81021 3.84882 3.91490 4.06117 4.09562 4.20093 4.20712 4.33096 4.35973 4.51137 4.59062 4.64806 4.71728 4.76986 4.78671 4.82466 4.92950 4.95391 5.02188 5.07306 5.10266 5.12143 5.20302 5.25266 5.34851 5.44743 5.56039 5.62107 5.67125 5.94148 6.10045 6.23875 6.31458 6.46404 6.74976 7.31197 8.87895 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028451 B = 0.004424 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.918850 B = 6328.075916 C = 6704.394868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.531 4.531 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.082 4.082 11 C 0.069 3.931 12 N -0.510 5.510 13 C 0.048 3.952 14 C 0.077 3.923 15 H 0.093 0.907 16 C -0.123 4.123 17 C -0.131 4.131 18 C 0.044 3.956 19 N -0.684 5.684 20 C -0.004 4.004 21 C -0.172 4.172 22 C -0.152 4.152 23 H 0.266 0.734 24 H 0.018 0.982 25 H 0.016 0.984 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.341 0.659 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.914 -11.892 1.664 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.120 4.120 11 C -0.059 4.059 12 N -0.235 5.235 13 C -0.080 4.080 14 C -0.033 4.033 15 H 0.111 0.889 16 C -0.162 4.162 17 C -0.169 4.169 18 C -0.085 4.085 19 N -0.314 5.314 20 C -0.113 4.113 21 C -0.210 4.210 22 C -0.189 4.189 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.158 0.842 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.647 -12.696 1.732 24.300 hybrid contribution -0.427 2.191 -0.135 2.237 sum 20.221 -10.505 1.597 22.843 Atomic orbital electron populations 1.70076 1.08358 1.28143 1.52835 1.26050 0.95631 1.03604 0.94131 0.85619 0.79487 0.78087 0.79207 1.19136 1.20918 1.16971 1.21494 0.92224 0.92983 1.50176 0.95318 1.19499 0.93836 0.95215 0.96222 1.21218 0.93743 0.96392 1.00678 1.22066 0.95326 0.88011 1.00466 1.61671 1.17732 1.17843 1.26217 1.22613 0.87921 0.97771 0.99720 1.22480 0.86999 0.95204 0.98571 0.88887 1.22633 0.98028 0.99500 0.96033 1.22745 0.94281 0.99327 1.00506 1.22884 0.98539 0.98801 0.88291 1.62203 1.12576 1.34779 1.21875 1.22416 1.03925 0.94105 0.90853 1.23005 0.91326 1.04045 1.02587 1.23232 0.99416 0.92348 1.03889 0.92519 0.96334 0.96593 0.93210 0.93832 0.90886 0.94822 0.91238 0.94125 0.92420 0.91549 0.90739 0.90247 0.89674 0.93656 0.84213 0.89943 0.89869 0.88506 0.87089 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.08 -3.31 5.12 30.59 0.16 -3.16 16 11 C 0.07 2.17 4.98 86.30 0.43 2.60 16 12 N -0.51 -13.67 4.24 -870.96 -3.69 -17.36 16 13 C 0.05 1.06 4.11 86.30 0.35 1.41 16 14 C 0.08 1.53 3.09 45.26 0.14 1.67 16 15 H 0.09 1.94 4.72 -2.39 -0.01 1.93 16 16 C -0.12 -2.52 6.07 31.77 0.19 -2.33 16 17 C -0.13 -2.14 7.08 31.97 0.23 -1.92 16 18 C 0.04 0.68 7.57 86.77 0.66 1.34 16 19 N -0.68 -12.16 7.37 -482.36 -3.56 -15.71 16 20 C 0.00 -0.11 4.41 44.92 0.20 0.09 16 21 C -0.17 -4.49 9.04 30.62 0.28 -4.21 16 22 C -0.15 -3.17 8.64 30.62 0.26 -2.90 16 23 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 25 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 26 H 0.05 2.06 6.51 -2.39 -0.02 2.05 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 2.20 7.70 -2.39 -0.02 2.18 16 29 H 0.03 1.04 8.04 -2.39 -0.02 1.02 16 30 H 0.07 1.51 7.67 -2.38 -0.02 1.49 16 31 H 0.04 0.86 8.04 -2.39 -0.02 0.84 16 32 H 0.06 1.33 7.83 -2.39 -0.02 1.31 16 33 H 0.07 1.45 7.47 -2.38 -0.02 1.43 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.34 5.39 8.22 -89.70 -0.74 4.66 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.11 2.18 5.43 -2.38 -0.01 2.17 16 Total: -1.00 -65.68 329.05 -1.16 -66.84 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.17 Total: 18.57 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 3.73 Total: -38.42 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -6.95 Total: -93.77 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -65.68 -1.16 -66.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236167033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.439 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds