Wall clock time and date at job start Mon Mar 30 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46967 * 239.99535 * 3 2 1 5 5 H 1.48496 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46990 * 120.00234 * 3 2 1 7 7 C 1.37877 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47437 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47191 * 179.68160 * 11 10 9 13 13 C 1.46898 * 111.00208 * 288.42554 * 12 11 10 14 14 C 1.53003 * 109.46892 * 169.99840 * 13 12 11 15 15 H 1.09001 * 109.90207 * 63.90484 * 14 13 12 16 16 C 1.53991 * 109.91520 * 185.00162 * 14 13 12 17 17 C 1.54591 * 105.14104 * 120.58159 * 16 14 13 18 18 C 1.54938 * 102.91877 * 21.95440 * 17 16 14 19 19 N 1.47898 * 109.91915 * 302.59482 * 14 13 12 20 20 C 1.46907 * 110.99641 * 164.47452 * 12 11 10 21 21 C 1.53000 * 117.50019 * 6.45401 * 20 12 11 22 22 C 1.53000 * 117.49738 * 297.83106 * 20 12 11 23 23 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47066 * 59.99758 * 9 7 2 25 25 H 1.09004 * 109.47160 * 299.99527 * 9 7 2 26 26 H 1.08996 * 109.47065 * 300.00077 * 10 9 7 27 27 H 1.09001 * 109.47215 * 59.99572 * 10 9 7 28 28 H 1.08997 * 109.47214 * 299.68586 * 11 10 9 29 29 H 1.09005 * 109.46577 * 59.68430 * 11 10 9 30 30 H 1.08999 * 109.47400 * 290.00574 * 13 12 11 31 31 H 1.09001 * 109.46939 * 50.00385 * 13 12 11 32 32 H 1.09001 * 110.31016 * 239.49692 * 16 14 13 33 33 H 1.09003 * 110.30731 * 1.56432 * 16 14 13 34 34 H 1.09000 * 110.72636 * 140.31551 * 17 16 14 35 35 H 1.09008 * 110.72370 * 263.60171 * 17 16 14 36 36 H 1.09007 * 110.66696 * 81.02681 * 18 17 16 37 37 H 1.09002 * 110.66509 * 203.98019 * 18 17 16 38 38 H 1.00905 * 110.99841 * 335.82683 * 19 14 13 39 39 H 1.09000 * 115.54620 * 152.16878 * 20 12 11 40 40 H 1.08999 * 117.49742 * 0.02562 * 21 20 12 41 41 H 1.09004 * 117.49589 * 145.01739 * 21 20 12 42 42 H 1.08996 * 117.49843 * 214.97910 * 22 20 12 43 43 H 1.09000 * 117.50349 * 0.02562 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4348 -6.1036 -0.0065 13 6 3.0997 -6.2189 -1.3113 14 6 4.2536 -7.2184 -1.2092 15 1 3.8656 -8.2109 -0.9800 16 6 5.0354 -7.2543 -2.5354 17 6 6.4806 -6.8511 -2.1631 18 6 6.5502 -7.1705 -0.6486 19 7 5.2012 -6.7884 -0.1583 20 6 1.7744 -7.3634 0.3609 21 6 0.2536 -7.3413 0.5277 22 6 1.1565 -7.4559 1.7575 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6043 -0.8894 27 1 2.8719 -3.6043 0.8905 28 1 0.8581 -5.0470 0.8942 29 1 0.8490 -5.0425 -0.8858 30 1 2.3827 -6.5663 -2.0551 31 1 3.4881 -5.2447 -1.6085 32 1 5.0198 -8.2594 -2.9567 33 1 4.6125 -6.5414 -3.2432 34 1 7.2032 -7.4502 -2.7173 35 1 6.6424 -5.7878 -2.3409 36 1 6.7314 -8.2332 -0.4875 37 1 7.3221 -6.5723 -0.1644 38 1 5.1415 -5.7932 -0.0028 39 1 2.2227 -8.2670 -0.0520 40 1 -0.2568 -6.3922 0.3644 41 1 -0.2989 -8.2306 0.2242 42 1 1.1980 -8.4206 2.2632 43 1 1.2397 -6.5820 2.4037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236167330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:13 Heat of formation + Delta-G solvation = 20.378959 kcal Electronic energy + Delta-G solvation = -19083.052503 eV Core-core repulsion = 16356.321897 eV Total energy + Delta-G solvation = -2726.730606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.44719 -37.93320 -34.57483 -33.20650 -31.46167 -29.88301 -29.30203 -26.40754 -24.33499 -23.09310 -22.15051 -21.64483 -20.53237 -20.16640 -19.07229 -16.62565 -16.24373 -15.76966 -15.50584 -14.93553 -14.45829 -14.33969 -14.04902 -13.71403 -13.34614 -12.71495 -12.54570 -12.13946 -11.94660 -11.71991 -11.52222 -11.34638 -11.27549 -11.11886 -10.98551 -10.76494 -10.67733 -10.56992 -10.46325 -10.24932 -10.08921 -9.56960 -9.30470 -9.04268 -8.47773 -8.32057 -7.79013 -5.97552 -3.99608 3.34687 3.38944 3.41534 3.82021 4.15665 4.41375 4.49353 4.66215 4.69332 4.92519 5.04772 5.09526 5.18886 5.24915 5.38134 5.40510 5.43763 5.48463 5.62477 5.72585 5.76866 5.81833 5.82273 5.85808 5.98925 6.03225 6.06877 6.13758 6.20637 6.33368 6.38478 6.72179 6.79630 6.89651 7.15604 7.42768 7.44489 7.55584 7.70528 7.85966 8.02860 8.46181 9.07333 9.64216 11.13863 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.005228 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.927077 B = 5354.683740 C = 6534.128838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.051 3.949 12 N -0.495 5.495 13 C 0.049 3.951 14 C 0.080 3.920 15 H 0.079 0.921 16 C -0.150 4.150 17 C -0.158 4.158 18 C 0.039 3.961 19 N -0.653 5.653 20 C 0.030 3.970 21 C -0.227 4.227 22 C -0.169 4.169 23 H 0.260 0.740 24 H 0.012 0.988 25 H 0.015 0.985 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.347 0.653 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.893 -16.981 -2.972 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.140 4.140 11 C -0.076 4.076 12 N -0.216 5.216 13 C -0.079 4.079 14 C -0.031 4.031 15 H 0.097 0.903 16 C -0.189 4.189 17 C -0.197 4.197 18 C -0.091 4.091 19 N -0.282 5.282 20 C -0.079 4.079 21 C -0.266 4.266 22 C -0.207 4.207 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.165 0.835 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.996 -17.297 -2.138 19.175 hybrid contribution -0.124 1.423 -1.410 2.007 sum 7.872 -15.873 -3.547 18.070 Atomic orbital electron populations 1.69957 1.06051 1.26633 1.50966 1.25020 0.94829 0.99199 0.95398 0.86672 0.79592 0.83218 0.78600 1.20329 1.21311 1.20206 1.21205 0.92968 0.91050 1.50419 0.92779 1.19063 0.94040 0.91416 0.97008 1.21637 0.99095 0.92688 1.00612 1.22434 0.93935 0.90862 1.00365 1.61862 1.29699 1.02140 1.27883 1.22478 0.95451 0.99735 0.90278 1.22373 0.92793 0.98873 0.89033 0.90339 1.22869 0.95645 1.01787 0.98631 1.23121 0.96680 1.01571 0.98364 1.23138 0.92276 1.01357 0.92314 1.62681 1.02335 1.22617 1.40582 1.22566 0.91379 0.93986 1.00007 1.23621 0.95056 1.03459 1.04486 1.22987 1.03498 1.02889 0.91362 0.93005 0.96942 0.96656 0.93772 0.92541 0.90864 0.95147 0.94435 0.89939 0.91534 0.91249 0.91334 0.91449 0.90782 0.91017 0.83474 0.87083 0.87993 0.89494 0.89084 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.13 5.21 -26.73 -0.14 -2.26 16 11 C 0.05 0.89 3.61 -3.83 -0.01 0.88 16 12 N -0.49 -7.37 4.46 -226.64 -1.01 -8.38 16 13 C 0.05 0.65 3.88 -3.82 -0.01 0.64 16 14 C 0.08 0.93 3.28 -66.64 -0.22 0.71 16 15 H 0.08 0.92 6.58 -51.93 -0.34 0.58 16 16 C -0.15 -1.49 6.57 -25.38 -0.17 -1.66 16 17 C -0.16 -1.49 7.06 -24.87 -0.18 -1.67 16 18 C 0.04 0.40 7.55 -1.90 -0.01 0.38 16 19 N -0.65 -8.10 7.20 -103.13 -0.74 -8.85 16 20 C 0.03 0.40 5.81 -67.71 -0.39 0.01 16 21 C -0.23 -2.93 9.53 -26.73 -0.25 -3.18 16 22 C -0.17 -2.19 9.96 -26.73 -0.27 -2.45 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.90 6.57 -51.93 -0.34 0.56 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.31 5.84 -51.93 -0.30 1.01 16 29 H 0.03 0.54 7.88 -51.93 -0.41 0.13 16 30 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.08 1.20 6.37 -51.93 -0.33 0.87 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 36 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.35 4.71 8.40 -39.29 -0.33 4.38 16 39 H 0.11 1.35 6.41 -51.93 -0.33 1.02 16 40 H 0.10 1.46 5.92 -51.93 -0.31 1.16 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.39 7.70 -51.93 -0.40 0.99 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -29.52 332.76 -10.92 -40.44 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.69 Total: 3.16 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -2.21 Total: -21.76 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -1.02 Total: -43.68 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.52 -10.92 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236167330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.818 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds