Wall clock time and date at job start Mon Mar 30 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00125 * 2 1 4 4 H 1.48504 * 109.47554 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47326 * 300.00272 * 3 2 1 6 6 H 1.48502 * 109.46846 * 59.99817 * 3 2 1 7 7 C 1.37878 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47330 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.46901 * 111.00177 * 293.95570 * 11 10 9 13 13 C 1.52998 * 109.47107 * 162.36525 * 12 11 10 14 14 C 1.53004 * 117.49719 * 186.10762 * 13 12 11 15 15 C 1.52998 * 117.49563 * 117.48722 * 13 12 11 16 16 C 1.46900 * 110.99856 * 170.00316 * 11 10 9 17 17 C 1.53005 * 109.47024 * 202.48920 * 16 11 10 18 18 H 1.09005 * 110.36297 * 297.63035 * 17 16 11 19 19 C 1.54371 * 110.41422 * 175.28119 * 17 16 11 20 20 C 1.54261 * 105.06108 * 217.37009 * 19 17 16 21 21 C 1.54375 * 105.05780 * 359.97438 * 20 19 17 22 22 N 1.48560 * 110.41251 * 59.97325 * 17 16 11 23 23 H 0.96995 * 119.99901 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47112 * 60.00181 * 9 7 2 25 25 H 1.08996 * 109.47419 * 300.00227 * 9 7 2 26 26 H 1.09012 * 109.47023 * 60.00295 * 10 9 7 27 27 H 1.09001 * 109.47628 * 300.00623 * 10 9 7 28 28 H 1.09006 * 109.46580 * 42.36708 * 12 11 10 29 29 H 1.08996 * 109.47348 * 282.37306 * 12 11 10 30 30 H 1.08996 * 115.56156 * 331.79661 * 13 12 11 31 31 H 1.08995 * 117.49565 * 145.02257 * 14 13 12 32 32 H 1.08994 * 117.50094 * 0.02562 * 14 13 12 33 33 H 1.08993 * 117.49924 * 0.02562 * 15 13 12 34 34 H 1.09005 * 117.51617 * 214.96578 * 15 13 12 35 35 H 1.08991 * 109.47223 * 322.48703 * 16 11 10 36 36 H 1.09001 * 109.47312 * 82.49178 * 16 11 10 37 37 H 1.09000 * 110.32162 * 336.25914 * 19 17 16 38 38 H 1.09000 * 110.32866 * 98.47075 * 19 17 16 39 39 H 1.09000 * 110.32937 * 118.89255 * 20 19 17 40 40 H 1.09005 * 110.32288 * 241.09993 * 20 19 17 41 41 H 1.09011 * 110.40845 * 142.63458 * 21 20 19 42 42 H 1.09000 * 110.41551 * 265.07888 * 21 20 19 43 43 H 1.00897 * 111.00256 * 277.82653 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9343 0.0020 12 6 0.7659 -5.1116 1.2556 13 6 -0.3072 -6.1851 1.0637 14 6 -1.2879 -6.4174 2.2149 15 6 -0.2003 -7.4512 1.9160 16 6 2.4172 -6.0655 -0.2363 17 6 1.6193 -7.2528 -0.7789 18 1 0.8825 -7.5815 -0.0459 19 6 2.5665 -8.4145 -1.1483 20 6 1.9616 -9.0345 -2.4248 21 6 0.6994 -8.1957 -2.7188 22 7 0.9528 -6.8891 -2.0559 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8911 27 1 2.8714 -3.6047 -0.8890 28 1 0.2923 -4.1699 1.5331 29 1 1.4513 -5.4200 2.0450 30 1 -0.6885 -6.2927 0.0483 31 1 -2.3144 -6.6778 1.9567 32 1 -1.1689 -5.8052 3.1087 33 1 0.6343 -7.5191 2.6138 34 1 -0.5114 -8.3919 1.4617 35 1 3.1766 -5.7758 -0.9625 36 1 2.8988 -6.3487 0.6997 37 1 3.5688 -8.0362 -1.3496 38 1 2.5931 -9.1513 -0.3455 39 1 2.6669 -8.9606 -3.2525 40 1 1.6913 -10.0757 -2.2485 41 1 0.5753 -8.0593 -3.7932 42 1 -0.1823 -8.6727 -2.2909 43 1 0.0900 -6.3947 -1.8854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236170754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:16 Heat of formation + Delta-G solvation = 24.185307 kcal Electronic energy + Delta-G solvation = -19370.304038 eV Core-core repulsion = 16643.738488 eV Total energy + Delta-G solvation = -2726.565550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.17022 -37.35407 -35.73664 -32.98287 -30.60269 -30.08102 -28.86182 -26.58290 -24.78779 -22.63673 -22.38102 -20.94224 -20.47827 -19.90121 -19.55348 -16.68479 -16.36327 -15.67176 -15.25476 -14.70845 -14.42193 -14.38028 -13.83057 -13.58715 -12.99243 -12.80474 -12.33982 -12.17359 -11.94617 -11.59537 -11.42178 -11.36824 -11.21414 -11.11839 -10.99764 -10.95139 -10.86639 -10.51366 -10.40713 -10.12047 -9.88948 -9.53954 -9.23481 -9.02928 -8.28382 -8.23804 -7.61594 -5.95297 -3.97042 3.33993 3.41426 3.45515 3.92645 4.29863 4.44731 4.54647 4.79646 4.86478 4.98556 5.04051 5.10363 5.18975 5.36287 5.40761 5.55210 5.61978 5.67342 5.70769 5.74425 5.83324 5.85412 5.96196 5.96813 5.99581 6.02936 6.13372 6.16114 6.20434 6.36513 6.48229 6.48756 6.59677 7.01547 7.06987 7.58608 7.63746 7.69938 7.87786 7.97800 8.15632 8.49351 9.10620 9.66339 11.16090 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.005107 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.154564 B = 5481.006192 C = 6139.395784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.066 3.934 11 N -0.529 5.529 12 C 0.079 3.921 13 C -0.131 4.131 14 C -0.181 4.181 15 C -0.191 4.191 16 C 0.071 3.929 17 C 0.061 3.939 18 H 0.067 0.933 19 C -0.122 4.122 20 C -0.122 4.122 21 C 0.032 3.968 22 N -0.646 5.646 23 H 0.259 0.741 24 H 0.026 0.974 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -18.316 0.420 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.061 4.061 11 N -0.253 5.253 12 C -0.049 4.049 13 C -0.149 4.149 14 C -0.218 4.218 15 C -0.228 4.228 16 C -0.058 4.058 17 C -0.049 4.049 18 H 0.084 0.916 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.097 4.097 22 N -0.277 5.277 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.901 -17.949 -0.358 17.975 hybrid contribution 0.229 0.494 1.208 1.326 sum 1.131 -17.455 0.850 17.512 Atomic orbital electron populations 1.69981 1.05991 1.26356 1.50931 1.24978 0.94799 0.99095 0.95396 0.86571 0.80124 0.83969 0.77527 1.19800 1.21007 1.21120 1.21245 0.93000 0.91123 1.50483 0.92825 1.19106 0.93964 0.90097 0.97707 1.22315 0.96639 0.88292 0.98806 1.61922 1.27679 1.02364 1.33289 1.21822 0.94226 0.98507 0.90372 1.22401 0.99895 0.96582 0.96045 1.22982 0.95299 1.02867 1.00672 1.23056 1.01698 0.93791 1.04226 1.22091 0.94311 0.90982 0.98373 1.22762 0.96279 0.93822 0.92040 0.91560 1.22330 0.99713 0.97034 0.97026 1.22250 0.97368 0.98273 0.98130 1.22916 0.96065 0.90817 0.99943 1.63564 1.28252 1.16387 1.19501 0.93132 0.95602 0.96601 0.96606 0.91917 0.89051 0.95503 0.87629 0.89089 0.88839 0.89209 0.89527 0.90944 0.95409 0.91283 0.91986 0.91352 0.92037 0.90646 0.95055 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.75 4.94 -27.89 -0.14 0.61 16 10 C 0.07 1.41 4.87 -3.82 -0.02 1.39 16 11 N -0.53 -9.49 4.32 -234.62 -1.01 -10.50 16 12 C 0.08 1.32 5.13 -3.82 -0.02 1.30 16 13 C -0.13 -1.81 3.84 -90.62 -0.35 -2.16 16 14 C -0.18 -2.22 10.25 -26.73 -0.27 -2.49 16 15 C -0.19 -2.20 8.62 -26.73 -0.23 -2.43 16 16 C 0.07 1.09 4.64 -3.82 -0.02 1.07 16 17 C 0.06 0.80 2.57 -66.07 -0.17 0.63 16 18 H 0.07 0.85 3.97 -51.93 -0.21 0.64 16 19 C -0.12 -1.37 6.55 -25.35 -0.17 -1.53 16 20 C -0.12 -1.25 7.00 -25.35 -0.18 -1.43 16 21 C 0.03 0.37 7.47 -2.11 -0.02 0.35 16 22 N -0.65 -9.04 7.16 -102.65 -0.73 -9.77 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.43 6.27 -51.93 -0.33 0.11 16 26 H 0.02 0.34 8.12 -51.92 -0.42 -0.09 16 27 H 0.06 1.36 7.81 -51.93 -0.41 0.95 16 28 H 0.09 1.77 5.91 -51.93 -0.31 1.47 16 29 H 0.03 0.43 7.48 -51.93 -0.39 0.05 16 30 H 0.11 1.53 6.47 -51.93 -0.34 1.19 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 34 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.07 1.17 7.63 -51.93 -0.40 0.78 16 36 H 0.03 0.41 7.70 -51.93 -0.40 0.01 16 37 H 0.07 0.79 7.82 -51.93 -0.41 0.38 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.34 5.05 7.81 -39.29 -0.31 4.75 16 LS Contribution 330.35 15.07 4.98 4.98 Total: -1.00 -29.55 330.35 -10.70 -40.25 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.66 Total: 2.77 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.99 Total: -18.26 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -1.01 Total: -46.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.55 -10.70 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236170754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.438 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds