Wall clock time and date at job start Mon Mar 30 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00125 * 2 1 4 4 H 1.48504 * 109.47554 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47326 * 300.00272 * 3 2 1 6 6 H 1.48502 * 109.46846 * 59.99817 * 3 2 1 7 7 C 1.37878 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47330 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.46901 * 111.00177 * 293.95570 * 11 10 9 13 13 C 1.52998 * 109.47107 * 162.36525 * 12 11 10 14 14 C 1.53004 * 117.49719 * 186.10762 * 13 12 11 15 15 C 1.52998 * 117.49563 * 117.48722 * 13 12 11 16 16 C 1.46900 * 110.99856 * 170.00316 * 11 10 9 17 17 C 1.53005 * 109.47024 * 202.48920 * 16 11 10 18 18 H 1.09005 * 110.36297 * 297.63035 * 17 16 11 19 19 C 1.54371 * 110.41422 * 175.28119 * 17 16 11 20 20 C 1.54261 * 105.06108 * 217.37009 * 19 17 16 21 21 C 1.54375 * 105.05780 * 359.97438 * 20 19 17 22 22 N 1.48560 * 110.41251 * 59.97325 * 17 16 11 23 23 H 0.96995 * 119.99901 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47112 * 60.00181 * 9 7 2 25 25 H 1.08996 * 109.47419 * 300.00227 * 9 7 2 26 26 H 1.09012 * 109.47023 * 60.00295 * 10 9 7 27 27 H 1.09001 * 109.47628 * 300.00623 * 10 9 7 28 28 H 1.09006 * 109.46580 * 42.36708 * 12 11 10 29 29 H 1.08996 * 109.47348 * 282.37306 * 12 11 10 30 30 H 1.08996 * 115.56156 * 331.79661 * 13 12 11 31 31 H 1.08995 * 117.49565 * 145.02257 * 14 13 12 32 32 H 1.08994 * 117.50094 * 0.02562 * 14 13 12 33 33 H 1.08993 * 117.49924 * 0.02562 * 15 13 12 34 34 H 1.09005 * 117.51617 * 214.96578 * 15 13 12 35 35 H 1.08991 * 109.47223 * 322.48703 * 16 11 10 36 36 H 1.09001 * 109.47312 * 82.49178 * 16 11 10 37 37 H 1.09000 * 110.32162 * 336.25914 * 19 17 16 38 38 H 1.09000 * 110.32866 * 98.47075 * 19 17 16 39 39 H 1.09000 * 110.32937 * 118.89255 * 20 19 17 40 40 H 1.09005 * 110.32288 * 241.09993 * 20 19 17 41 41 H 1.09011 * 110.40845 * 142.63458 * 21 20 19 42 42 H 1.09000 * 110.41551 * 265.07888 * 21 20 19 43 43 H 1.00897 * 111.00256 * 277.82653 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9343 0.0020 12 6 0.7659 -5.1116 1.2556 13 6 -0.3072 -6.1851 1.0637 14 6 -1.2879 -6.4174 2.2149 15 6 -0.2003 -7.4512 1.9160 16 6 2.4172 -6.0655 -0.2363 17 6 1.6193 -7.2528 -0.7789 18 1 0.8825 -7.5815 -0.0459 19 6 2.5665 -8.4145 -1.1483 20 6 1.9616 -9.0345 -2.4248 21 6 0.6994 -8.1957 -2.7188 22 7 0.9528 -6.8891 -2.0559 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8911 27 1 2.8714 -3.6047 -0.8890 28 1 0.2923 -4.1699 1.5331 29 1 1.4513 -5.4200 2.0450 30 1 -0.6885 -6.2927 0.0483 31 1 -2.3144 -6.6778 1.9567 32 1 -1.1689 -5.8052 3.1087 33 1 0.6343 -7.5191 2.6138 34 1 -0.5114 -8.3919 1.4617 35 1 3.1766 -5.7758 -0.9625 36 1 2.8988 -6.3487 0.6997 37 1 3.5688 -8.0362 -1.3496 38 1 2.5931 -9.1513 -0.3455 39 1 2.6669 -8.9606 -3.2525 40 1 1.6913 -10.0757 -2.2485 41 1 0.5753 -8.0593 -3.7932 42 1 -0.1823 -8.6727 -2.2909 43 1 0.0900 -6.3947 -1.8854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236170754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:15 Heat of formation + Delta-G solvation = 5.141048 kcal Electronic energy + Delta-G solvation = -19371.129859 eV Core-core repulsion = 16643.738488 eV Total energy + Delta-G solvation = -2727.391371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32629 -38.41267 -37.10657 -35.06595 -32.21141 -31.01330 -30.34286 -27.99310 -26.48510 -24.17303 -23.34993 -22.04404 -21.87851 -21.13701 -20.73695 -18.57537 -17.65020 -16.86671 -16.55413 -16.26013 -16.02207 -15.58428 -15.03168 -14.91547 -14.54357 -14.18571 -13.94132 -13.47814 -13.12960 -12.92195 -12.86142 -12.66736 -12.57018 -12.44885 -12.34719 -12.21786 -12.09594 -12.00740 -11.79240 -11.44563 -11.29207 -11.15877 -11.06817 -10.65413 -10.45560 -9.31276 -9.03729 -8.18631 -6.29518 1.39981 1.40684 1.53859 2.40933 2.86331 3.06361 3.14788 3.44767 3.81744 3.95288 3.97153 4.03320 4.12773 4.21609 4.25240 4.41028 4.51475 4.52791 4.62429 4.69983 4.74920 4.76627 4.79449 4.88142 4.95238 5.02585 5.03140 5.07255 5.11228 5.11961 5.25926 5.28299 5.31588 5.36930 5.48456 5.72320 5.81408 6.06161 6.16127 6.37947 6.43600 6.55885 6.87800 7.39290 8.93621 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.005107 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.154564 B = 5481.006192 C = 6139.395784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.040 3.960 10 C 0.083 3.917 11 N -0.535 5.535 12 C 0.084 3.916 13 C -0.148 4.148 14 C -0.181 4.181 15 C -0.164 4.164 16 C 0.073 3.927 17 C 0.065 3.935 18 H 0.074 0.926 19 C -0.121 4.121 20 C -0.118 4.118 21 C 0.031 3.969 22 N -0.669 5.669 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.005 1.005 26 H 0.015 0.985 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -19.953 0.745 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.075 0.925 9 C 0.003 3.997 10 C -0.045 4.045 11 N -0.258 5.258 12 C -0.044 4.044 13 C -0.167 4.167 14 C -0.218 4.218 15 C -0.201 4.201 16 C -0.055 4.055 17 C -0.045 4.045 18 H 0.092 0.908 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.098 4.098 22 N -0.299 5.299 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.013 0.987 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.679 -19.615 -0.034 19.687 hybrid contribution -0.049 0.987 1.103 1.481 sum 1.631 -18.628 1.069 18.730 Atomic orbital electron populations 1.70115 1.07772 1.27621 1.51578 1.25929 0.95720 1.03190 0.94657 0.85408 0.79045 0.78821 0.77810 1.18675 1.20347 1.20277 1.21659 0.93422 0.92427 1.50705 0.92452 1.18897 0.94082 0.91786 0.94939 1.21928 0.95297 0.88770 0.98468 1.61865 1.27961 1.01796 1.34198 1.21716 0.94800 0.97908 0.89931 1.22182 1.00233 0.97744 0.96547 1.23073 0.96118 1.03122 0.99508 1.23106 1.01089 0.93333 1.02530 1.22150 0.94033 0.90701 0.98626 1.22733 0.96547 0.93292 0.91928 0.90821 1.22344 0.98849 0.96555 0.98171 1.22256 0.96595 0.99137 0.97589 1.22984 0.97212 0.89798 0.99799 1.63559 1.28069 1.18123 1.20188 0.92808 0.99083 0.98666 0.96636 0.92392 0.92768 0.94811 0.88227 0.87776 0.89241 0.88578 0.87472 0.92129 0.94398 0.91771 0.90020 0.91364 0.89838 0.90623 0.93942 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.04 2.22 4.94 29.85 0.15 2.37 16 10 C 0.08 3.68 4.87 86.30 0.42 4.10 16 11 N -0.53 -19.66 4.32 -896.21 -3.87 -23.53 16 12 C 0.08 2.89 5.13 86.30 0.44 3.33 16 13 C -0.15 -4.04 3.84 -10.79 -0.04 -4.08 16 14 C -0.18 -4.20 10.25 30.60 0.31 -3.89 16 15 C -0.16 -3.34 8.62 30.59 0.26 -3.08 16 16 C 0.07 2.21 4.64 86.30 0.40 2.61 16 17 C 0.06 1.61 2.57 45.06 0.12 1.72 16 18 H 0.07 1.72 3.97 -2.38 -0.01 1.71 16 19 C -0.12 -2.38 6.55 31.49 0.21 -2.17 16 20 C -0.12 -2.08 7.00 31.49 0.22 -1.86 16 21 C 0.03 0.65 7.47 86.42 0.65 1.30 16 22 N -0.67 -18.29 7.16 -478.67 -3.43 -21.72 16 23 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.00 -0.29 6.27 -2.39 -0.01 -0.30 16 26 H 0.02 0.68 8.12 -2.38 -0.02 0.66 16 27 H 0.06 2.59 7.81 -2.39 -0.02 2.57 16 28 H 0.05 2.24 5.91 -2.38 -0.01 2.23 16 29 H 0.03 1.09 7.48 -2.39 -0.02 1.07 16 30 H 0.10 2.86 6.47 -2.39 -0.02 2.84 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 32 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.10 1.88 8.03 -2.39 -0.02 1.86 16 34 H 0.11 1.80 8.10 -2.38 -0.02 1.78 16 35 H 0.06 1.96 7.63 -2.39 -0.02 1.94 16 36 H 0.04 1.07 7.70 -2.39 -0.02 1.05 16 37 H 0.06 1.33 7.82 -2.39 -0.02 1.31 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.34 9.93 7.81 -89.70 -0.70 9.23 16 Total: -1.00 -65.03 330.35 -0.89 -65.92 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.27 Total: 20.36 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 3.83 Total: -30.69 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -7.01 Total: -102.79 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.03 -0.89 -65.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236170754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.058 kcal (2) G-P(sol) polarization free energy of solvation -65.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds