Wall clock time and date at job start Mon Mar 30 2020 04:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99829 * 2 1 4 4 H 1.48500 * 109.47161 * 239.99837 * 3 2 1 5 5 H 1.48504 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47021 * 119.99757 * 3 2 1 7 7 C 1.37871 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00434 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47378 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00065 * 293.95154 * 11 10 9 13 13 C 1.53004 * 109.46830 * 168.64607 * 12 11 10 14 14 C 1.53007 * 117.51436 * 117.46215 * 13 12 11 15 15 C 1.52991 * 117.49693 * 186.09038 * 13 12 11 16 16 C 1.46898 * 110.99706 * 169.99999 * 11 10 9 17 17 C 1.53004 * 109.47207 * 287.75465 * 16 11 10 18 18 H 1.08992 * 110.33693 * 65.75360 * 17 16 11 19 19 C 1.54907 * 110.37538 * 188.13243 * 17 16 11 20 20 C 1.55140 * 101.65399 * 155.89622 * 19 17 16 21 21 C 1.54309 * 103.01848 * 324.34272 * 20 19 17 22 22 N 1.47446 * 107.23715 * 22.28567 * 21 20 19 23 23 H 0.96998 * 120.00220 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47017 * 59.99750 * 9 7 2 25 25 H 1.09006 * 109.46640 * 300.00097 * 9 7 2 26 26 H 1.09002 * 109.47258 * 59.99889 * 10 9 7 27 27 H 1.09001 * 109.46945 * 300.00311 * 10 9 7 28 28 H 1.08996 * 109.46946 * 48.65385 * 12 11 10 29 29 H 1.09003 * 109.46995 * 288.64570 * 12 11 10 30 30 H 1.08995 * 115.54999 * 331.76640 * 13 12 11 31 31 H 1.09000 * 117.49672 * 214.97294 * 14 13 12 32 32 H 1.08996 * 117.49584 * 359.97438 * 14 13 12 33 33 H 1.09002 * 117.50429 * 359.97438 * 15 13 12 34 34 H 1.09003 * 117.50106 * 145.00005 * 15 13 12 35 35 H 1.08996 * 109.47590 * 47.75297 * 16 11 10 36 36 H 1.08995 * 109.47419 * 167.75302 * 16 11 10 37 37 H 1.09006 * 110.98843 * 273.98681 * 19 17 16 38 38 H 1.09001 * 110.99459 * 37.79945 * 19 17 16 39 39 H 1.08999 * 110.70095 * 205.95900 * 20 19 17 40 40 H 1.08996 * 110.85336 * 82.80134 * 20 19 17 41 41 H 1.09001 * 109.89166 * 262.87575 * 21 20 19 42 42 H 1.09013 * 110.02213 * 141.76643 * 21 20 19 43 43 H 1.00900 * 111.00081 * 123.25207 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5108 -4.9342 0.0024 12 6 0.7648 -5.1108 1.2556 13 6 -0.2006 -6.2891 1.1126 14 6 0.0092 -7.4910 2.0360 15 6 -1.1742 -6.5484 2.2640 16 6 2.4173 -6.0656 -0.2345 17 6 2.8659 -6.0621 -1.6973 18 1 3.4738 -5.1816 -1.9050 19 6 3.6554 -7.3545 -2.0224 20 6 3.4580 -7.4647 -3.5572 21 6 2.0206 -6.9417 -3.7612 22 7 1.6921 -6.1007 -2.5955 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5566 0.8903 26 1 2.8713 -3.6039 0.8923 27 1 2.8727 -3.6046 -0.8877 28 1 0.2012 -4.2038 1.4738 29 1 1.4628 -5.3096 2.0689 30 1 -0.5536 -6.4876 0.1007 31 1 -0.2058 -8.4800 1.6314 32 1 0.8355 -7.4425 2.7452 33 1 -1.1267 -5.8798 3.1236 34 1 -2.1678 -6.9174 2.0096 35 1 3.2893 -5.9743 0.4131 36 1 1.8986 -6.9989 -0.0158 37 1 4.7102 -7.2413 -1.7715 38 1 3.2242 -8.2148 -1.5105 39 1 3.5407 -8.5016 -3.8829 40 1 4.1752 -6.8375 -4.0867 41 1 1.3261 -7.7797 -3.8214 42 1 1.9654 -6.3483 -4.6740 43 1 1.4267 -5.1709 -2.8838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236170845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:19 Heat of formation + Delta-G solvation = 19.120442 kcal Electronic energy + Delta-G solvation = -19206.572072 eV Core-core repulsion = 16479.786892 eV Total energy + Delta-G solvation = -2726.785179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.86471 -37.55094 -35.59229 -32.97406 -30.45681 -29.95095 -29.14955 -26.21821 -24.91336 -22.56700 -22.14908 -20.95370 -20.49108 -20.07751 -19.15680 -16.66188 -16.37037 -15.64017 -15.32836 -14.64761 -14.41718 -14.01193 -13.83975 -13.49457 -13.03529 -12.83445 -12.36289 -12.23984 -11.89111 -11.70980 -11.33944 -11.33277 -11.11592 -11.10651 -10.92665 -10.83529 -10.76677 -10.59144 -10.49074 -10.03775 -9.80037 -9.52645 -9.23130 -9.06149 -8.29196 -8.06754 -7.52550 -5.96377 -3.98778 3.34267 3.38947 3.41002 4.07824 4.30925 4.47572 4.56764 4.76017 4.87227 5.07449 5.12242 5.21805 5.36235 5.37541 5.39196 5.58543 5.66075 5.74195 5.78230 5.81123 5.85199 5.86060 5.97243 6.00533 6.07604 6.13309 6.20349 6.24911 6.31359 6.37572 6.51859 6.57671 6.71233 7.03774 7.21533 7.63708 7.70600 7.74097 7.88831 7.97928 8.15689 8.47876 9.08661 9.64563 11.14728 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.006065 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.151815 B = 4615.417766 C = 5938.682308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.030 3.970 10 C 0.061 3.939 11 N -0.523 5.523 12 C 0.085 3.915 13 C -0.130 4.130 14 C -0.191 4.191 15 C -0.183 4.183 16 C 0.072 3.928 17 C 0.084 3.916 18 H 0.050 0.950 19 C -0.125 4.125 20 C -0.142 4.142 21 C 0.046 3.954 22 N -0.662 5.662 23 H 0.260 0.740 24 H 0.025 0.975 25 H 0.017 0.983 26 H 0.015 0.985 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.022 0.978 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.023 0.977 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -15.929 -2.082 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.069 0.931 9 C -0.007 4.007 10 C -0.065 4.065 11 N -0.246 5.246 12 C -0.043 4.043 13 C -0.148 4.148 14 C -0.228 4.228 15 C -0.220 4.220 16 C -0.057 4.057 17 C -0.026 4.026 18 H 0.068 0.932 19 C -0.163 4.163 20 C -0.181 4.181 21 C -0.084 4.084 22 N -0.293 5.293 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.040 0.960 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.939 -16.281 -2.112 16.678 hybrid contribution 1.687 1.534 0.171 2.286 sum 4.626 -14.747 -1.941 15.577 Atomic orbital electron populations 1.69962 1.05958 1.26601 1.50593 1.24974 0.94797 0.99037 0.95382 0.86700 0.79608 0.83376 0.78529 1.20313 1.21278 1.20357 1.21170 0.92849 0.91216 1.50913 0.93050 1.19081 0.93905 0.89971 0.97792 1.22350 0.96689 0.88998 0.98499 1.61967 1.27089 1.01910 1.33673 1.21690 0.94867 0.97654 0.90065 1.22354 1.00295 0.96088 0.96087 1.23015 1.00565 0.95192 1.04033 1.22912 0.94640 1.03323 1.01164 1.22047 0.94414 0.95467 0.93810 1.22357 0.90264 0.96174 0.93851 0.93229 1.22718 0.99816 0.98257 0.95538 1.22771 0.97494 1.01314 0.96513 1.22595 0.95034 0.97751 0.93009 1.61577 1.34996 1.17994 1.14716 0.92983 0.95663 0.96524 0.96690 0.92431 0.89259 0.95983 0.86699 0.89473 0.89532 0.89089 0.89166 0.95890 0.90704 0.91343 0.90822 0.91284 0.91794 0.91387 0.93632 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.77 4.92 -27.88 -0.14 0.64 16 10 C 0.06 1.30 4.74 -3.83 -0.02 1.28 16 11 N -0.52 -9.45 4.24 -234.63 -1.00 -10.44 16 12 C 0.09 1.48 5.11 -3.82 -0.02 1.46 16 13 C -0.13 -1.94 4.72 -90.62 -0.43 -2.37 16 14 C -0.19 -2.40 10.06 -26.73 -0.27 -2.67 16 15 C -0.18 -2.40 10.25 -26.73 -0.27 -2.68 16 16 C 0.07 1.10 4.60 -3.82 -0.02 1.08 16 17 C 0.08 1.18 3.18 -66.18 -0.21 0.97 16 18 H 0.05 0.77 6.88 -51.93 -0.36 0.41 16 19 C -0.12 -1.42 6.49 -24.59 -0.16 -1.58 16 20 C -0.14 -1.48 6.94 -24.91 -0.17 -1.65 16 21 C 0.05 0.54 7.58 -2.84 -0.02 0.52 16 22 N -0.66 -9.57 6.84 -103.84 -0.71 -10.28 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.02 0.46 6.34 -51.93 -0.33 0.13 16 26 H 0.01 0.32 8.12 -51.93 -0.42 -0.10 16 27 H 0.06 1.20 6.55 -51.93 -0.34 0.86 16 28 H 0.09 1.78 6.04 -51.93 -0.31 1.47 16 29 H 0.02 0.37 7.84 -51.93 -0.41 -0.03 16 30 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 36 H 0.07 1.12 6.78 -51.93 -0.35 0.76 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.35 5.48 8.91 -39.29 -0.35 5.13 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -29.16 337.41 -10.93 -40.10 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.89 Total: 3.51 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -2.14 Total: -18.51 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.97 Total: -46.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.16 -10.93 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236170845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.217 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds