Wall clock time and date at job start Mon Mar 30 2020 04:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99737 * 2 1 4 4 H 1.48501 * 109.47135 * 240.00135 * 3 2 1 5 5 H 1.48495 * 109.47460 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46975 * 120.00418 * 3 2 1 7 7 C 1.37876 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99497 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47255 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47244 * 179.56515 * 10 9 7 12 12 C 1.46896 * 110.99735 * 196.40269 * 11 10 9 13 13 C 1.53006 * 109.47253 * 162.89503 * 12 11 10 14 14 H 1.08999 * 109.45283 * 58.42985 * 13 12 11 15 15 C 1.53043 * 109.46009 * 298.46633 * 13 12 11 16 16 C 1.53116 * 109.27743 * 180.80228 * 15 13 12 17 17 C 1.53125 * 109.16110 * 57.65607 * 16 15 13 18 18 C 1.53040 * 109.27452 * 302.34305 * 17 16 15 19 19 N 1.46845 * 109.52420 * 59.18162 * 18 17 16 20 20 C 1.46898 * 111.00280 * 72.44474 * 11 10 9 21 21 C 1.53001 * 117.50023 * 265.77094 * 20 11 10 22 22 C 1.52995 * 117.50089 * 197.14478 * 20 11 10 23 23 H 0.97009 * 119.99962 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47123 * 60.00231 * 9 7 2 25 25 H 1.09008 * 109.47206 * 300.00457 * 9 7 2 26 26 H 1.09000 * 109.47249 * 59.56229 * 10 9 7 27 27 H 1.08996 * 109.46913 * 299.56153 * 10 9 7 28 28 H 1.09000 * 109.47362 * 42.89350 * 12 11 10 29 29 H 1.09004 * 109.47139 * 282.89134 * 12 11 10 30 30 H 1.09005 * 109.50006 * 300.74595 * 15 13 12 31 31 H 1.09000 * 109.50591 * 60.81749 * 15 13 12 32 32 H 1.08998 * 109.51853 * 177.55522 * 16 15 13 33 33 H 1.08997 * 109.52598 * 297.68543 * 16 15 13 34 34 H 1.08990 * 109.50407 * 182.40606 * 17 16 15 35 35 H 1.08997 * 109.50270 * 62.27903 * 17 16 15 36 36 H 1.08998 * 109.46265 * 299.16455 * 18 17 16 37 37 H 1.09001 * 109.46427 * 179.19581 * 18 17 16 38 38 H 1.00898 * 111.00167 * 174.16039 * 19 18 17 39 39 H 1.09002 * 115.54746 * 51.47492 * 20 11 10 40 40 H 1.09001 * 117.49440 * 359.97438 * 21 20 11 41 41 H 1.08993 * 117.50070 * 145.01908 * 21 20 11 42 42 H 1.09001 * 117.50328 * 214.98098 * 22 20 11 43 43 H 1.09001 * 117.49599 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 0.0100 12 6 2.3892 -6.0459 0.3977 13 6 1.5380 -7.2485 0.8105 14 1 0.8920 -7.5376 -0.0184 15 6 0.6785 -6.8736 2.0200 16 6 -0.1566 -8.0856 2.4419 17 6 0.7794 -9.2562 2.7556 18 6 1.6360 -9.5620 1.5247 19 7 2.4160 -8.3720 1.1617 20 6 0.8818 -5.1898 -1.2927 21 6 -0.5730 -4.7516 -1.4729 22 6 -0.2316 -6.2377 -1.3461 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.8771 -3.5999 0.8855 27 1 2.8667 -3.6087 -0.8944 28 1 3.0153 -5.7392 1.2355 29 1 3.0214 -6.3210 -0.4467 30 1 1.3235 -6.5710 2.8450 31 1 0.0165 -6.0493 1.7546 32 1 -0.7379 -7.8362 3.3295 33 1 -0.8303 -8.3638 1.6315 34 1 0.1890 -10.1347 3.0154 35 1 1.4260 -8.9911 3.5921 36 1 0.9895 -9.8403 0.6925 37 1 2.3136 -10.3857 1.7493 38 1 3.0593 -8.5762 0.4117 39 1 1.5418 -5.1122 -2.1567 40 1 -1.0634 -4.2741 -0.6246 41 1 -0.8703 -4.3856 -2.4555 42 1 -0.3045 -6.8493 -2.2454 43 1 -0.4977 -6.7372 -0.4145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236170975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:28 Heat of formation + Delta-G solvation = -0.492691 kcal Electronic energy + Delta-G solvation = -19448.183826 eV Core-core repulsion = 16720.548157 eV Total energy + Delta-G solvation = -2727.635669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43044 -38.63216 -35.82009 -34.83791 -33.17821 -32.57874 -30.65581 -27.15977 -25.54697 -24.34448 -23.32539 -23.20995 -22.18358 -21.02994 -20.43977 -18.46114 -17.57654 -16.60681 -16.46917 -16.35584 -16.13811 -15.20131 -14.98209 -14.89930 -14.33314 -14.28541 -14.14790 -13.92744 -13.66629 -13.25012 -13.00148 -12.78798 -12.64366 -12.46163 -12.34145 -12.11719 -11.75136 -11.63656 -11.49609 -11.35879 -11.18301 -11.17331 -10.99105 -10.81206 -10.48822 -9.28332 -9.13993 -8.16892 -6.27708 1.40105 1.43163 1.50920 2.40990 2.79841 2.92372 3.16302 3.44115 3.93339 3.93578 4.05856 4.07684 4.11311 4.24748 4.30626 4.37463 4.49056 4.55820 4.61327 4.69425 4.75431 4.77328 4.82632 4.90092 4.96851 5.00365 5.07994 5.12485 5.14405 5.19357 5.31177 5.33901 5.44274 5.50984 5.57738 5.74562 5.84687 6.15197 6.17264 6.31379 6.41005 6.56959 6.89757 7.40697 8.94630 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031964 B = 0.004661 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.782490 B = 6006.312142 C = 6206.432846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.044 3.956 10 C 0.084 3.916 11 N -0.515 5.515 12 C 0.068 3.932 13 C 0.096 3.904 14 H 0.057 0.943 15 C -0.101 4.101 16 C -0.121 4.121 17 C -0.115 4.115 18 C 0.062 3.938 19 N -0.695 5.695 20 C -0.002 4.002 21 C -0.169 4.169 22 C -0.147 4.147 23 H 0.262 0.738 24 H 0.003 0.997 25 H -0.014 1.014 26 H 0.058 0.942 27 H 0.019 0.981 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.087 0.913 38 H 0.346 0.654 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 -19.800 0.268 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.006 3.994 10 C -0.044 4.044 11 N -0.239 5.239 12 C -0.060 4.060 13 C -0.013 4.013 14 H 0.074 0.926 15 C -0.139 4.139 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.067 4.067 19 N -0.328 5.328 20 C -0.110 4.110 21 C -0.207 4.207 22 C -0.184 4.184 23 H 0.071 0.929 24 H 0.021 0.979 25 H 0.005 0.995 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.105 0.895 38 H 0.165 0.835 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.133 0.867 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.155 -19.460 1.277 19.536 hybrid contribution 0.580 1.117 -1.363 1.855 sum 1.734 -18.343 -0.086 18.425 Atomic orbital electron populations 1.70107 1.07701 1.27640 1.51451 1.25897 0.95703 1.03042 0.94716 0.85552 0.78324 0.78358 0.79099 1.19240 1.20777 1.19311 1.21626 0.93388 0.92581 1.50905 0.92554 1.18828 0.94039 0.91273 0.95222 1.21966 0.95228 0.88566 0.98615 1.61664 1.33229 1.01965 1.27051 1.22011 0.93883 0.90988 0.99096 1.21529 0.93222 0.89876 0.96711 0.92583 1.21425 0.97845 0.97608 0.97046 1.21602 0.97751 0.95308 1.01176 1.21591 0.97604 0.98163 0.97930 1.21935 0.96096 0.91853 0.96858 1.60179 1.20282 1.06458 1.45925 1.22349 0.91248 1.06323 0.91118 1.22873 0.97626 0.98060 1.02156 1.23240 1.00157 0.91238 1.03810 0.92877 0.97872 0.99533 0.92385 0.96238 0.91598 0.94682 0.93382 0.92652 0.91902 0.92052 0.90062 0.92178 0.94941 0.89461 0.83511 0.90397 0.90772 0.88726 0.86681 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.26 5.46 84.65 0.46 0.73 16 3 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.04 2.39 4.91 29.85 0.15 2.54 16 10 C 0.08 3.66 4.92 86.30 0.42 4.08 16 11 N -0.51 -18.71 3.86 -870.99 -3.36 -22.07 16 12 C 0.07 2.03 4.65 86.31 0.40 2.44 16 13 C 0.10 2.40 2.08 44.94 0.09 2.50 16 14 H 0.06 1.37 4.69 -2.39 -0.01 1.36 16 15 C -0.10 -2.76 4.83 30.65 0.15 -2.62 16 16 C -0.12 -2.59 6.00 30.67 0.18 -2.40 16 17 C -0.12 -2.06 6.09 30.65 0.19 -1.87 16 18 C 0.06 1.05 6.55 86.33 0.57 1.61 16 19 N -0.70 -14.58 6.50 -491.67 -3.20 -17.77 16 20 C 0.00 -0.05 4.41 44.91 0.20 0.15 16 21 C -0.17 -5.77 9.10 30.60 0.28 -5.49 16 22 C -0.15 -3.88 8.63 30.59 0.26 -3.61 16 23 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 24 H 0.00 0.17 6.60 -2.39 -0.02 0.15 16 25 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 26 H 0.06 2.52 7.70 -2.39 -0.02 2.50 16 27 H 0.02 0.84 8.04 -2.39 -0.02 0.82 16 28 H 0.07 2.10 7.70 -2.39 -0.02 2.09 16 29 H 0.03 0.98 8.04 -2.38 -0.02 0.96 16 30 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.05 1.79 7.52 -2.39 -0.02 1.77 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.35 6.27 8.79 -89.70 -0.79 5.48 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.10 2.71 5.70 -2.39 -0.01 2.70 16 Total: -1.00 -64.45 329.78 -0.49 -64.94 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.17 Total: 18.61 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 3.59 Total: -33.58 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -6.28 Total: -96.97 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.45 -0.49 -64.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236170975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.447 kcal (2) G-P(sol) polarization free energy of solvation -64.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds