Wall clock time and date at job start Mon Mar 30 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99714 * 2 1 4 4 H 1.48498 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47379 * 300.00112 * 3 2 1 6 6 H 1.48492 * 109.47340 * 60.00098 * 3 2 1 7 7 C 1.37879 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46853 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46953 * 176.18201 * 10 9 7 12 12 C 1.46904 * 111.00075 * 160.11399 * 11 10 9 13 13 C 1.53007 * 109.46928 * 287.41065 * 12 11 10 14 14 H 1.08998 * 109.49790 * 54.66307 * 13 12 11 15 15 C 1.53118 * 109.50098 * 174.73895 * 13 12 11 16 16 C 1.53120 * 109.16077 * 177.59227 * 15 13 12 17 17 C 1.53038 * 109.27936 * 302.34890 * 16 15 13 18 18 N 1.46848 * 109.52185 * 59.17605 * 17 16 15 19 19 C 1.46850 * 111.20162 * 298.25879 * 18 17 16 20 20 C 1.46902 * 110.99955 * 284.06589 * 11 10 9 21 21 C 1.53001 * 117.49785 * 103.72256 * 20 11 10 22 22 C 1.53003 * 117.49636 * 172.37927 * 20 11 10 23 23 H 0.97003 * 120.00446 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46629 * 60.00267 * 9 7 2 25 25 H 1.08996 * 109.47169 * 300.00489 * 9 7 2 26 26 H 1.09004 * 109.46871 * 56.18508 * 10 9 7 27 27 H 1.08995 * 109.47693 * 296.18364 * 10 9 7 28 28 H 1.08999 * 109.46706 * 47.40750 * 12 11 10 29 29 H 1.08993 * 109.47104 * 167.40864 * 12 11 10 30 30 H 1.08997 * 109.52651 * 297.50258 * 15 13 12 31 31 H 1.09001 * 109.52208 * 57.69034 * 15 13 12 32 32 H 1.09000 * 109.49738 * 62.28421 * 16 15 13 33 33 H 1.08991 * 109.50369 * 182.36449 * 16 15 13 34 34 H 1.09000 * 109.46397 * 179.18895 * 17 16 15 35 35 H 1.08991 * 109.46381 * 299.16395 * 17 16 15 36 36 H 1.00905 * 110.99857 * 174.15828 * 18 17 16 37 37 H 1.09004 * 109.45964 * 301.72698 * 19 18 17 38 38 H 1.08999 * 109.46196 * 181.76204 * 19 18 17 39 39 H 1.08996 * 115.55474 * 318.04929 * 20 11 10 40 40 H 1.08993 * 117.50193 * 215.00078 * 21 20 11 41 41 H 1.09003 * 117.49866 * 0.02562 * 21 20 11 42 42 H 1.09006 * 117.49910 * 359.97438 * 22 20 11 43 43 H 1.09000 * 117.50020 * 144.97726 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5132 -4.9323 0.0904 12 6 2.3430 -6.0529 -0.3718 13 6 2.4833 -5.9897 -1.8941 14 1 2.8662 -5.0112 -2.1838 15 6 3.4531 -7.0777 -2.3636 16 6 3.5415 -7.0466 -3.8920 17 6 2.1437 -7.2432 -4.4831 18 7 1.2541 -6.1774 -4.0045 19 6 1.1162 -6.2170 -2.5430 20 6 1.0307 -5.1637 1.4585 21 6 -0.4558 -4.9274 1.7328 22 6 0.0969 -6.3541 1.6863 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.9167 -3.5669 0.8516 27 1 2.8253 -3.6432 -0.9244 28 1 3.3295 -5.9879 0.0871 29 1 1.8721 -6.9944 -0.0891 30 1 4.4396 -6.8948 -1.9378 31 1 3.0906 -8.0532 -2.0395 32 1 3.9406 -6.0847 -4.2138 33 1 4.1980 -7.8461 -4.2348 34 1 2.2010 -7.2072 -5.5710 35 1 1.7507 -8.2111 -4.1721 36 1 0.3524 -6.2298 -4.4544 37 1 0.7280 -7.1898 -2.2411 38 1 0.4273 -5.4357 -2.2219 39 1 1.7345 -4.9169 2.2533 40 1 -0.7300 -4.5251 2.7079 41 1 -1.0759 -4.6006 0.8980 42 1 -0.1599 -6.9652 0.8210 43 1 0.1866 -6.8906 2.6309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236171541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:33 Heat of formation + Delta-G solvation = -6.828473 kcal Electronic energy + Delta-G solvation = -19393.837223 eV Core-core repulsion = 16665.926814 eV Total energy + Delta-G solvation = -2727.910409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24143 -38.78009 -35.91103 -34.98697 -33.22687 -32.26714 -30.64861 -26.99331 -25.53708 -24.60510 -23.23563 -22.94594 -22.41101 -20.89436 -20.37154 -18.47595 -17.42059 -17.09910 -16.44023 -16.30283 -15.81078 -15.45315 -15.28951 -14.70413 -14.45093 -14.22403 -14.10866 -13.85104 -13.46757 -13.22544 -13.12434 -12.85356 -12.77719 -12.41390 -12.31614 -12.14127 -11.83049 -11.47996 -11.43042 -11.36576 -11.29132 -11.18452 -11.01785 -10.80109 -10.50094 -9.30230 -9.10724 -8.17451 -6.28245 1.39062 1.39917 1.52844 2.40897 2.94390 2.95754 3.15693 3.33962 3.92157 3.97507 4.02862 4.09384 4.15756 4.19520 4.35446 4.40779 4.47030 4.53168 4.66187 4.70738 4.72311 4.81011 4.82873 4.83849 4.91292 4.97247 5.08993 5.11596 5.13733 5.15800 5.27664 5.35906 5.41614 5.51543 5.54400 5.75482 5.85436 6.16130 6.20555 6.35167 6.43434 6.55869 6.89757 7.40279 8.94695 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.005935 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.085287 B = 4716.251361 C = 5651.683093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.047 3.953 10 C 0.085 3.915 11 N -0.516 5.516 12 C 0.067 3.933 13 C -0.078 4.078 14 H 0.049 0.951 15 C -0.110 4.110 16 C -0.116 4.116 17 C 0.058 3.942 18 N -0.709 5.709 19 C 0.083 3.917 20 C -0.005 4.005 21 C -0.173 4.173 22 C -0.140 4.140 23 H 0.262 0.738 24 H -0.015 1.015 25 H -0.003 1.003 26 H 0.017 0.983 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.347 0.653 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -18.162 -3.231 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.009 3.991 10 C -0.043 4.043 11 N -0.240 5.240 12 C -0.060 4.060 13 C -0.098 4.098 14 H 0.068 0.932 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.071 4.071 18 N -0.341 5.341 19 C -0.047 4.047 20 C -0.114 4.114 21 C -0.211 4.211 22 C -0.178 4.178 23 H 0.071 0.929 24 H 0.003 0.997 25 H 0.016 0.984 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.165 0.835 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.184 -17.565 -3.536 18.399 hybrid contribution 0.152 0.680 0.641 0.947 sum 4.336 -16.884 -2.896 17.671 Atomic orbital electron populations 1.70123 1.07731 1.27519 1.51642 1.25914 0.95713 1.03105 0.94739 0.85439 0.79042 0.78971 0.77831 1.18740 1.20358 1.20222 1.21673 0.93301 0.92603 1.50604 0.92686 1.18772 0.93984 0.91454 0.94861 1.21961 0.94965 0.88809 0.98535 1.61755 1.39513 1.02150 1.20584 1.22111 0.95299 0.94006 0.94626 1.21146 0.95827 0.99142 0.93664 0.93250 1.21570 0.98861 0.98165 0.96163 1.21587 0.96661 1.02189 0.94991 1.21973 0.93279 0.91883 0.99955 1.60202 1.17765 1.49878 1.06268 1.21656 0.96847 0.99240 0.86916 1.22398 0.93283 1.05461 0.90281 1.22929 0.96096 1.00009 1.02057 1.23081 1.00936 0.90027 1.03708 0.92871 0.99701 0.98442 0.96499 0.92411 0.94978 0.89532 0.91563 0.90959 0.92863 0.89483 0.90015 0.94547 0.83452 0.94869 0.92572 0.90576 0.88808 0.90598 0.88075 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -32.21 9.11 25.60 0.23 -31.97 16 8 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.05 2.61 5.14 29.85 0.15 2.76 16 10 C 0.08 3.77 4.76 86.30 0.41 4.18 16 11 N -0.52 -18.81 4.01 -870.97 -3.49 -22.30 16 12 C 0.07 1.94 4.31 86.30 0.37 2.31 16 13 C -0.08 -2.23 2.37 -10.74 -0.03 -2.26 16 14 H 0.05 1.75 6.45 -2.39 -0.02 1.74 16 15 C -0.11 -2.36 5.29 30.67 0.16 -2.20 16 16 C -0.12 -2.35 6.09 30.65 0.19 -2.16 16 17 C 0.06 1.17 6.55 86.33 0.57 1.73 16 18 N -0.71 -18.40 6.85 -514.01 -3.52 -21.92 16 19 C 0.08 2.35 5.71 86.32 0.49 2.84 16 20 C -0.01 -0.18 4.55 44.92 0.20 0.02 16 21 C -0.17 -5.76 9.87 30.62 0.30 -5.45 16 22 C -0.14 -3.55 9.62 30.62 0.29 -3.26 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H 0.00 -0.17 7.11 -2.39 -0.02 -0.18 16 26 H 0.02 0.75 7.89 -2.38 -0.02 0.73 16 27 H 0.06 2.58 6.23 -2.39 -0.01 2.57 16 28 H 0.03 0.91 8.04 -2.39 -0.02 0.90 16 29 H 0.09 2.14 6.98 -2.39 -0.02 2.12 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.35 7.94 8.90 -89.69 -0.80 7.15 16 37 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.06 1.98 7.79 -2.39 -0.02 1.96 16 39 H 0.08 2.60 7.98 -2.39 -0.02 2.58 16 40 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.10 2.41 7.80 -2.38 -0.02 2.39 16 43 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -67.06 334.60 -0.73 -67.78 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.16 Total: 19.58 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 3.81 Total: -32.80 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -6.72 Total: -102.20 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -67.06 -0.73 -67.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236171541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.955 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds