Wall clock time and date at job start Mon Mar 30 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00332 * 2 1 4 4 C 1.52999 * 109.47199 * 287.40337 * 3 2 1 5 5 H 1.08995 * 109.47401 * 306.47830 * 4 3 2 6 6 C 1.47202 * 109.47213 * 66.47844 * 4 3 2 7 7 N 3.68674 * 52.39271 * 322.04254 * 2 1 3 8 8 C 1.53003 * 109.47456 * 186.47409 * 4 3 2 9 9 C 1.50694 * 109.47560 * 174.99974 * 8 4 3 10 10 H 1.07999 * 119.99455 * 359.97438 * 9 8 4 11 11 C 1.37872 * 120.00448 * 180.02562 * 9 8 4 12 12 N 1.31521 * 119.99630 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00323 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46948 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47311 * 240.00079 * 13 11 9 16 16 H 1.48505 * 109.47104 * 119.99926 * 13 11 9 17 17 C 1.46904 * 111.00016 * 123.95740 * 2 1 3 18 18 C 1.52998 * 109.47174 * 159.89728 * 17 2 1 19 19 H 1.09002 * 110.28076 * 63.66700 * 18 17 2 20 20 C 1.54950 * 110.31000 * 185.86906 * 18 17 2 21 21 C 1.55301 * 100.94286 * 155.35824 * 20 18 17 22 22 C 1.54384 * 102.25264 * 325.86059 * 21 20 18 23 23 O 1.43239 * 107.58893 * 21.36427 * 22 21 20 24 24 H 1.08994 * 109.47184 * 71.41423 * 1 2 3 25 25 H 1.09000 * 109.47177 * 191.42048 * 1 2 3 26 26 H 1.09006 * 109.46680 * 311.41561 * 1 2 3 27 27 H 1.09001 * 109.47488 * 167.40342 * 3 2 1 28 28 H 1.09002 * 109.47253 * 47.40025 * 3 2 1 29 29 H 1.09008 * 109.46981 * 54.99889 * 8 4 3 30 30 H 1.08996 * 109.47453 * 295.00698 * 8 4 3 31 31 H 0.96990 * 120.00093 * 359.97438 * 12 11 9 32 32 H 1.09001 * 109.46747 * 279.89152 * 17 2 1 33 33 H 1.08996 * 109.47054 * 39.89322 * 17 2 1 34 34 H 1.09003 * 111.12121 * 273.27627 * 20 18 17 35 35 H 1.09000 * 111.12397 * 37.43638 * 20 18 17 36 36 H 1.09000 * 110.84501 * 207.67791 * 21 20 18 37 37 H 1.08995 * 111.02620 * 84.13420 * 21 20 18 38 38 H 1.08993 * 109.83546 * 261.84431 * 22 21 20 39 39 H 1.09005 * 109.82680 * 140.87206 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.7755 2.0021 -1.3764 5 1 2.1960 1.3534 -2.1448 6 6 0.3327 2.1719 -1.6135 7 7 -0.7808 2.3029 -1.7964 8 6 2.4648 3.3671 -1.4281 9 6 2.3535 3.9338 -2.8199 10 1 1.8425 3.3760 -3.5907 11 6 2.9047 5.1639 -3.1096 12 7 3.5283 5.8425 -2.1713 13 14 2.7673 5.8661 -4.8351 14 1 2.0244 4.9139 -5.6993 15 1 4.1270 6.0827 -5.3912 16 1 2.0404 7.1602 -4.7865 17 6 1.9955 -0.7661 1.1376 18 6 3.4429 -1.1721 0.8529 19 1 4.0736 -0.2873 0.7673 20 6 3.9700 -2.1047 1.9724 21 6 5.0879 -2.8718 1.2151 22 6 4.5040 -2.9790 -0.2100 23 8 3.5140 -1.9534 -0.3505 24 1 -0.3633 0.3275 -0.9740 25 1 -0.3633 -1.0073 0.2035 26 1 -0.3633 0.6799 0.7707 27 1 3.0620 1.3511 0.2241 28 1 1.4764 1.9599 0.7565 29 1 3.5166 3.2532 -1.1652 30 1 1.9850 4.0435 -0.7209 31 1 3.5999 5.4777 -1.2754 32 1 1.9608 -0.1511 2.0369 33 1 1.3896 -1.6600 1.2851 34 1 4.3810 -1.5292 2.8019 35 1 3.1907 -2.7847 2.3166 36 1 5.2406 -3.8609 1.6470 37 1 6.0183 -2.3041 1.2115 38 1 4.0448 -3.9577 -0.3489 39 1 5.2950 -2.8326 -0.9456 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246589281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:52 Heat of formation + Delta-G solvation = -44.931679 kcal Electronic energy + Delta-G solvation = -18728.617129 eV Core-core repulsion = 15863.221346 eV Total energy + Delta-G solvation = -2865.395782 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52146 -39.35829 -37.05143 -35.91548 -33.59664 -32.93532 -31.33298 -28.61268 -27.33959 -25.65592 -24.01049 -23.17321 -22.33149 -21.51092 -19.10060 -18.35589 -17.76831 -16.94783 -16.52898 -16.18089 -15.78773 -15.61731 -15.33330 -14.86125 -14.68287 -14.27264 -14.12235 -14.07866 -13.63230 -13.57027 -13.12619 -12.83402 -12.71873 -12.53532 -12.47328 -12.41914 -12.15714 -11.97201 -11.94933 -11.81557 -11.57858 -11.46479 -10.67517 -10.52794 -10.31712 -9.28858 -8.64742 -6.35248 1.53071 1.60644 1.77577 1.86253 1.89664 2.55099 2.75718 3.11815 3.14611 3.21176 3.66843 3.79641 3.96027 4.08471 4.18215 4.24497 4.31615 4.36225 4.47912 4.52551 4.57689 4.69516 4.72545 4.79703 4.82173 4.91525 4.93216 4.96865 5.06502 5.12339 5.18927 5.32899 5.38448 5.90409 6.01697 6.04368 6.20295 6.36331 6.62261 6.68508 7.42026 8.77550 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.005010 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.820076 B = 5587.029430 C = 6223.927861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.543 5.543 3 C 0.072 3.928 4 C 0.026 3.974 5 H 0.111 0.889 6 C 0.259 3.741 7 N -0.502 5.502 8 C 0.024 3.976 9 C -0.615 4.615 10 H 0.042 0.958 11 C -0.028 4.028 12 N -0.935 5.935 13 Si 1.111 2.889 14 H -0.279 1.279 15 H -0.272 1.272 16 H -0.283 1.283 17 C 0.057 3.943 18 C 0.079 3.921 19 H 0.063 0.937 20 C -0.144 4.144 21 C -0.149 4.149 22 C 0.037 3.963 23 O -0.391 6.391 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.023 0.977 27 H 0.104 0.896 28 H 0.041 0.959 29 H 0.032 0.968 30 H -0.002 1.002 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -18.381 10.741 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.057 4.057 4 C 0.004 3.996 5 H 0.129 0.871 6 C -0.056 4.056 7 N -0.180 5.180 8 C -0.015 4.015 9 C -0.653 4.653 10 H 0.061 0.939 11 C -0.227 4.227 12 N -0.572 5.572 13 Si 0.934 3.066 14 H -0.204 1.204 15 H -0.197 1.197 16 H -0.209 1.209 17 C -0.071 4.071 18 C 0.021 3.979 19 H 0.081 0.919 20 C -0.182 4.182 21 C -0.187 4.187 22 C -0.039 4.039 23 O -0.310 6.310 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.042 0.958 27 H 0.122 0.878 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.017 0.983 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.335 -17.107 8.921 19.434 hybrid contribution -0.245 -0.672 1.678 1.824 sum 2.090 -17.779 10.599 20.804 Atomic orbital electron populations 1.22644 0.87597 1.02011 1.00724 1.61891 1.07423 1.13026 1.44282 1.22179 1.01996 0.87944 0.93533 1.19040 0.81407 0.99298 0.99872 0.87087 1.29375 0.95182 0.89835 0.91248 1.81015 1.14317 1.11914 1.10794 1.19136 0.95644 0.90357 0.96335 1.22398 1.39451 1.06503 0.96977 0.93945 1.27061 0.92795 0.94808 1.08046 1.70850 1.41734 1.40743 1.03879 0.82990 0.77307 0.75447 0.70890 1.20412 1.19703 1.20946 1.22398 0.95280 0.98085 0.91296 1.23122 0.95679 0.94474 0.84628 0.91887 1.23281 0.98676 0.98377 0.97865 1.23100 0.98819 1.02564 0.94190 1.23285 0.91230 0.91712 0.97706 1.88565 1.59154 1.45973 1.37342 0.93010 0.89840 0.95843 0.87828 0.94052 0.95022 0.98322 0.92853 0.91750 0.89477 0.88363 0.89452 0.88316 0.90219 0.91060 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.69 127.69 1.11 1.64 16 2 N -0.54 -15.27 4.50 -922.46 -4.15 -19.43 16 3 C 0.07 2.23 4.46 86.30 0.38 2.61 16 4 C 0.03 1.02 2.41 -12.60 -0.03 0.99 16 5 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 6 C 0.26 11.10 10.81 89.44 0.97 12.07 16 7 N -0.50 -22.75 17.67 20.01 0.35 -22.40 16 8 C 0.02 1.14 3.73 29.85 0.11 1.26 16 9 C -0.62 -34.10 8.60 25.60 0.22 -33.88 16 10 H 0.04 2.39 7.59 -2.91 -0.02 2.36 16 11 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 12 N -0.93 -55.87 13.65 21.45 0.29 -55.58 16 13 Si 1.11 51.04 29.90 68.60 2.05 53.09 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 C 0.06 1.20 4.75 86.30 0.41 1.61 16 18 C 0.08 1.63 3.45 31.26 0.11 1.74 16 19 H 0.06 1.40 6.93 -2.39 -0.02 1.38 16 20 C -0.14 -1.93 6.57 32.05 0.21 -1.72 16 21 C -0.15 -1.92 7.02 31.85 0.22 -1.70 16 22 C 0.04 0.69 7.79 72.45 0.56 1.26 16 23 O -0.39 -10.19 10.90 -148.98 -1.62 -11.82 16 24 H 0.05 1.76 4.88 -2.39 -0.01 1.75 16 25 H 0.08 1.99 7.69 -2.39 -0.02 1.97 16 26 H 0.02 0.66 7.87 -2.38 -0.02 0.64 16 27 H 0.10 2.89 6.63 -2.39 -0.02 2.87 16 28 H 0.04 1.25 7.85 -2.39 -0.02 1.23 16 29 H 0.03 1.49 8.01 -2.38 -0.02 1.47 16 30 H 0.00 -0.08 8.01 -2.39 -0.02 -0.10 16 31 H 0.26 15.47 7.22 -92.72 -0.67 14.80 16 32 H 0.06 1.16 7.99 -2.39 -0.02 1.14 16 33 H 0.09 1.66 7.61 -2.39 -0.02 1.64 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.02 8.03 -2.39 -0.02 1.00 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -67.21 316.85 2.78 -64.43 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.12 Total: 6.98 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.74 Total: -15.28 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -3.51 Total: -97.40 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.62 Total: -11.82 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -67.21 2.78 -64.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246589281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.499 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds