Wall clock time and date at job start Mon Mar 30 2020 04:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99675 * 2 1 4 4 H 1.48502 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47074 * 299.99856 * 3 2 1 6 6 H 1.48493 * 109.47150 * 60.00290 * 3 2 1 7 7 C 1.37879 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99913 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46878 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99923 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01801 * 48.30058 * 11 10 9 13 13 C 1.54266 * 110.07376 * 286.88287 * 11 10 9 14 14 C 1.54889 * 104.19632 * 217.08169 * 13 11 10 15 15 C 1.54888 * 102.74890 * 37.94426 * 14 13 11 16 16 C 1.53876 * 110.03240 * 169.69320 * 11 10 9 17 17 H 1.09007 * 110.02958 * 238.61947 * 16 11 10 18 18 C 1.52995 * 110.03074 * 0.02562 * 16 11 10 19 19 H 1.09005 * 109.46465 * 305.81835 * 18 16 11 20 20 C 1.53029 * 109.46388 * 65.78859 * 18 16 11 21 21 C 1.53128 * 109.28095 * 179.19265 * 20 18 16 22 22 C 1.53121 * 109.15628 * 302.34912 * 21 20 18 23 23 C 1.53034 * 109.28091 * 57.65560 * 22 21 20 24 24 N 1.46853 * 109.52149 * 300.81236 * 23 22 21 25 25 H 0.96999 * 120.00189 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47263 * 60.00295 * 9 7 2 27 27 H 1.08998 * 109.47227 * 300.00192 * 9 7 2 28 28 H 1.00899 * 110.99989 * 303.95220 * 10 9 7 29 29 H 1.08995 * 110.48527 * 335.76697 * 13 11 10 30 30 H 1.09002 * 110.48427 * 98.40867 * 13 11 10 31 31 H 1.09006 * 110.75503 * 156.25561 * 14 13 11 32 32 H 1.08994 * 110.75657 * 279.44206 * 14 13 11 33 33 H 1.08998 * 110.48631 * 203.37707 * 15 14 13 34 34 H 1.08998 * 110.48553 * 80.73297 * 15 14 13 35 35 H 1.08999 * 109.50778 * 299.13625 * 20 18 16 36 36 H 1.09005 * 109.50551 * 59.25695 * 20 18 16 37 37 H 1.08992 * 109.52489 * 182.44228 * 21 20 18 38 38 H 1.08996 * 109.56990 * 62.28130 * 21 20 18 39 39 H 1.08995 * 109.50663 * 297.70542 * 22 21 20 40 40 H 1.09005 * 109.49703 * 177.59575 * 22 21 20 41 41 H 1.08999 * 109.46272 * 180.80495 * 23 22 21 42 42 H 1.08997 * 109.46762 * 60.82974 * 23 22 21 43 43 H 1.00896 * 110.99970 * 185.83666 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.7289 -4.9100 -0.7661 13 6 0.8826 -5.1723 1.3851 14 6 1.0595 -6.6966 1.5956 15 6 2.4540 -6.9673 0.9782 16 6 2.5045 -6.0483 -0.2598 17 1 2.2129 -6.6052 -1.1504 18 6 3.9145 -5.4809 -0.4347 19 1 3.9052 -4.7184 -1.2137 20 6 4.3804 -4.8576 0.8830 21 6 5.7995 -4.3090 0.7090 22 6 6.7256 -5.4438 0.2625 23 6 6.1917 -6.0500 -1.0373 24 7 4.8325 -6.5610 -0.8184 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8405 -3.5486 -0.7819 29 1 1.4163 -4.6162 2.1557 30 1 -0.1747 -4.9074 1.3852 31 1 1.0526 -6.9432 2.6573 32 1 0.2852 -7.2520 1.0665 33 1 2.5434 -8.0123 0.6816 34 1 3.2415 -6.7011 1.6833 35 1 3.7078 -4.0457 1.1595 36 1 4.3771 -5.6162 1.6657 37 1 6.1518 -3.9029 1.6570 38 1 5.7969 -3.5226 -0.0457 39 1 6.7591 -6.2116 1.0354 40 1 7.7285 -5.0506 0.0957 41 1 6.8410 -6.8676 -1.3502 42 1 6.1715 -5.2850 -1.8134 43 1 4.4945 -7.0503 -1.6335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250859851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:10 Heat of formation + Delta-G solvation = -24.344415 kcal Electronic energy + Delta-G solvation = -20023.257179 eV Core-core repulsion = 17294.587222 eV Total energy + Delta-G solvation = -2728.669957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97370 -38.13776 -35.86694 -34.02703 -33.04981 -32.20191 -29.43547 -28.35393 -26.85183 -24.45379 -23.76387 -23.52221 -21.67175 -20.43128 -19.58161 -18.47719 -17.30338 -16.77661 -16.65087 -16.20664 -15.75015 -15.44578 -14.92376 -14.77294 -14.42340 -14.29756 -14.13049 -13.84847 -13.40344 -13.00852 -12.91520 -12.69583 -12.42615 -12.26958 -12.13806 -11.94093 -11.77058 -11.69317 -11.63512 -11.54676 -11.17911 -11.04098 -10.99095 -10.87053 -10.63386 -9.26143 -8.88202 -8.22605 -6.32919 1.38626 1.39452 1.52890 2.38625 3.10977 3.27245 3.54753 3.72951 3.86680 4.00328 4.15213 4.22464 4.29844 4.39193 4.51886 4.56507 4.64794 4.71572 4.78802 4.84098 4.88988 4.94156 5.01490 5.08244 5.09898 5.17952 5.20061 5.22788 5.23763 5.31560 5.35241 5.44508 5.48721 5.58993 5.65493 5.70705 5.88992 6.06091 6.27354 6.48317 6.62461 6.75959 6.91154 7.38050 8.89261 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.006877 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.630234 B = 4070.832715 C = 5120.245741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.661 5.661 11 C 0.079 3.921 12 H 0.014 0.986 13 C -0.111 4.111 14 C -0.117 4.117 15 C -0.098 4.098 16 C -0.074 4.074 17 H 0.073 0.927 18 C 0.114 3.886 19 H 0.016 0.984 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.111 4.111 23 C 0.059 3.941 24 N -0.682 5.682 25 H 0.264 0.736 26 H -0.049 1.049 27 H 0.003 0.997 28 H 0.331 0.669 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.019 0.981 43 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.855 -14.868 -0.198 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.294 5.294 11 C -0.031 4.031 12 H 0.032 0.968 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.135 4.135 16 C -0.093 4.093 17 H 0.092 0.908 18 C 0.004 3.996 19 H 0.033 0.967 20 C -0.163 4.163 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.070 4.070 24 N -0.314 5.314 25 H 0.073 0.927 26 H -0.031 1.031 27 H 0.021 0.979 28 H 0.151 0.849 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.037 0.963 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.926 -14.927 1.111 17.961 hybrid contribution -0.697 1.786 -1.923 2.715 sum 9.229 -13.141 -0.812 16.079 Atomic orbital electron populations 1.70101 1.07785 1.27771 1.51876 1.25916 0.95711 1.03246 0.94797 0.85347 0.79005 0.78641 0.77693 1.18669 1.20463 1.20414 1.21561 0.93679 0.91441 1.50001 0.91857 1.19222 0.90774 0.89179 0.92890 1.61125 1.19213 1.01041 1.47988 1.22226 0.94430 0.89981 0.96502 0.96823 1.22334 0.98680 0.97511 0.96366 1.22466 0.97886 0.93769 1.01319 1.22330 0.96569 0.98758 0.95867 1.21792 0.93130 0.94808 0.99609 0.90830 1.21180 0.91015 0.90812 0.96627 0.96653 1.22107 0.96505 1.01297 0.96352 1.21579 0.96262 0.97663 1.00551 1.21564 0.98238 0.97542 0.97549 1.21923 0.90279 0.98484 0.96290 1.60350 1.02185 1.27342 1.41484 0.92744 1.03148 0.97912 0.84900 0.92257 0.94000 0.90605 0.91068 0.90480 0.90794 0.88742 0.91806 0.92407 0.94044 0.91397 0.91016 0.89305 0.96310 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -30.29 9.32 25.60 0.24 -30.06 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.18 5.26 85.56 0.45 11.63 16 10 N -0.66 -27.99 3.02 -491.83 -1.48 -29.47 16 11 C 0.08 2.84 3.02 45.64 0.14 2.97 16 12 H 0.01 0.54 8.06 -2.39 -0.02 0.52 16 13 C -0.11 -3.76 5.74 31.67 0.18 -3.58 16 14 C -0.12 -2.93 6.91 31.88 0.22 -2.71 16 15 C -0.10 -2.37 6.02 31.67 0.19 -2.18 16 16 C -0.07 -2.05 2.86 -10.07 -0.03 -2.08 16 17 H 0.07 1.86 8.13 -2.38 -0.02 1.84 16 18 C 0.11 3.16 1.73 44.93 0.08 3.23 16 19 H 0.02 0.50 6.27 -2.38 -0.01 0.49 16 20 C -0.12 -3.78 4.58 30.65 0.14 -3.64 16 21 C -0.12 -3.41 6.00 30.68 0.18 -3.23 16 22 C -0.11 -2.45 6.09 30.65 0.19 -2.26 16 23 C 0.06 1.25 6.55 86.32 0.57 1.81 16 24 N -0.68 -15.37 6.34 -491.68 -3.12 -18.49 16 25 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 26 H -0.05 -2.91 8.12 -2.39 -0.02 -2.93 16 27 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 28 H 0.33 13.77 6.04 -89.69 -0.54 13.22 16 29 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.91 5.22 -2.39 -0.01 1.90 16 35 H 0.09 3.53 5.43 -2.39 -0.01 3.52 16 36 H 0.06 1.87 5.72 -2.38 -0.01 1.86 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.34 6.70 8.78 -89.70 -0.79 5.91 16 Total: -1.00 -62.28 317.98 0.37 -61.91 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.35 Total: 25.70 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 3.01 Total: -29.55 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.32 Total: -104.90 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.28 0.37 -61.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250859851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.564 kcal (2) G-P(sol) polarization free energy of solvation -62.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds