Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.46903 * 110.99673 * 180.02562 * 12 11 10 14 14 H 1.08994 * 110.43762 * 32.44895 * 13 12 11 15 15 C 1.54990 * 110.48437 * 269.76218 * 13 12 11 16 16 C 1.55190 * 104.93528 * 243.81890 * 15 13 12 17 17 N 1.47094 * 103.52231 * 23.99514 * 16 15 13 18 18 C 1.45671 * 116.53792 * 197.58085 * 17 16 15 19 19 C 1.53621 * 107.79790 * 182.68741 * 18 17 16 20 20 C 1.52814 * 110.70283 * 302.62112 * 19 18 17 21 21 C 1.53663 * 110.61059 * 53.75043 * 20 19 18 22 22 C 1.48722 * 103.70527 * 317.76866 * 17 16 15 23 23 H 1.09000 * 110.93211 * 285.86305 * 22 17 16 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 29 29 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 30 30 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 31 31 H 1.00894 * 110.99951 * 56.04708 * 12 11 10 32 32 H 1.09006 * 110.34960 * 2.68619 * 15 13 12 33 33 H 1.09001 * 110.34888 * 124.95288 * 15 13 12 34 34 H 1.09003 * 110.61231 * 265.48538 * 16 15 13 35 35 H 1.08996 * 110.74765 * 142.56893 * 16 15 13 36 36 H 1.09001 * 109.79326 * 63.10718 * 18 17 16 37 37 H 1.09000 * 109.79173 * 302.26397 * 18 17 16 38 38 H 1.09012 * 109.22752 * 182.30834 * 19 18 17 39 39 H 1.09000 * 109.23149 * 62.94732 * 19 18 17 40 40 H 1.08994 * 109.25117 * 293.45725 * 20 19 18 41 41 H 1.08996 * 109.24739 * 174.03386 * 20 19 18 42 42 H 1.09001 * 109.84274 * 184.35632 * 21 20 19 43 43 H 1.09004 * 109.84302 * 63.38903 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 1 7.9128 -3.2099 0.5484 15 6 8.0522 -4.0805 -1.4520 16 6 8.7758 -5.4464 -1.5902 17 7 8.1297 -6.2829 -0.5673 18 6 8.8391 -7.4924 -0.1723 19 6 7.9627 -8.2403 0.8437 20 6 7.6466 -7.3489 2.0440 21 6 7.0344 -6.0172 1.5825 22 6 8.0108 -5.3764 0.6057 23 1 8.9795 -5.2279 1.0829 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6579 -3.1507 0.8896 29 1 5.9148 -2.1228 -0.8901 30 1 5.9149 -2.1230 0.8899 31 1 5.6656 -4.5376 -0.7825 32 1 7.2303 -4.0131 -2.1648 33 1 8.7555 -3.2618 -1.6048 34 1 9.8404 -5.3395 -1.3822 35 1 8.6205 -5.8668 -2.5838 36 1 9.7922 -7.2282 0.2860 37 1 9.0106 -8.1215 -1.0457 38 1 8.4905 -9.1304 1.1866 39 1 7.0311 -8.5391 0.3631 40 1 8.5653 -7.1499 2.5957 41 1 6.9402 -7.8620 2.6965 42 1 6.8855 -5.3614 2.4404 43 1 6.0814 -6.2004 1.0862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250883548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = -12.440363 kcal Electronic energy + Delta-G solvation = -19001.180920 eV Core-core repulsion = 16273.027161 eV Total energy + Delta-G solvation = -2728.153759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.21210 -36.45512 -34.66504 -33.32056 -31.92773 -30.39599 -29.22731 -27.19570 -25.37884 -23.13152 -22.14762 -21.71775 -20.86856 -19.97354 -19.36824 -16.75558 -16.21822 -15.53555 -15.21091 -14.98479 -14.56844 -14.23175 -13.87593 -13.58406 -13.54569 -13.31869 -12.61737 -12.57974 -12.46971 -11.97041 -11.83344 -11.59023 -11.35931 -11.13932 -11.00468 -10.89924 -10.75246 -10.61581 -10.42724 -10.33416 -9.90102 -9.68254 -9.49774 -9.12147 -8.54072 -8.49456 -8.06799 -5.99828 -3.97159 3.33162 3.40407 3.44518 3.83965 4.34769 4.43724 4.48987 4.59967 4.78928 4.93326 4.97269 5.04449 5.19483 5.29315 5.34090 5.36306 5.42860 5.49944 5.54891 5.68028 5.69178 5.73746 5.79851 5.88489 5.89707 5.94398 5.97902 6.14154 6.23583 6.24624 6.56837 6.61902 6.64711 6.86592 6.97780 7.09101 7.33071 7.43644 7.50272 7.70991 7.85435 8.60078 9.06291 9.63009 11.13856 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.003876 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.308937 B = 7222.968411 C = 7600.008501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.057 3.943 12 N -0.672 5.672 13 C 0.091 3.909 14 H 0.080 0.920 15 C -0.152 4.152 16 C 0.045 3.955 17 N -0.521 5.521 18 C 0.056 3.944 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.087 4.087 22 C 0.073 3.927 23 H 0.046 0.954 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.008 0.992 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.345 0.655 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.905 -13.420 0.016 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.072 4.072 12 N -0.303 5.303 13 C -0.021 4.021 14 H 0.098 0.902 15 C -0.192 4.192 16 C -0.084 4.084 17 N -0.246 5.246 18 C -0.072 4.072 19 C -0.151 4.151 20 C -0.162 4.162 21 C -0.125 4.125 22 C -0.035 4.035 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.217 -13.579 0.502 24.359 hybrid contribution 1.483 1.445 -0.768 2.209 sum 21.700 -12.134 -0.266 24.863 Atomic orbital electron populations 1.69922 1.06295 1.26779 1.51464 1.25049 0.94729 0.99157 0.94702 0.86765 0.80362 0.83668 0.78392 1.20417 1.21446 1.19049 1.21171 0.89588 0.94436 1.50361 0.91024 1.19541 0.97097 0.92428 0.96007 1.21427 0.91219 0.99474 1.01539 1.22175 0.97518 0.87972 0.99544 1.60514 1.05195 1.14326 1.50247 1.22114 0.89420 0.96631 0.93916 0.90151 1.23351 1.00796 0.96392 0.98659 1.22778 0.95769 0.93300 0.96515 1.63925 1.48208 1.04769 1.07697 1.22001 0.94797 0.92176 0.98263 1.21565 1.00307 0.97515 0.95710 1.21668 1.00372 0.96973 0.97223 1.21246 0.99251 0.94324 0.97712 1.22473 0.97694 0.91921 0.91452 0.93644 0.92820 0.96698 0.97377 0.93114 0.91955 0.96021 0.91724 0.83565 0.90688 0.91445 0.94604 0.90457 0.95294 0.91101 0.92159 0.91110 0.93094 0.91941 0.91643 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -1.97 5.41 -26.73 -0.14 -2.12 16 11 C 0.06 0.91 5.55 -3.82 -0.02 0.89 16 12 N -0.67 -9.32 4.91 -105.47 -0.52 -9.83 16 13 C 0.09 1.07 3.27 -66.53 -0.22 0.86 16 14 H 0.08 0.96 7.82 -51.93 -0.41 0.55 16 15 C -0.15 -1.60 6.71 -24.52 -0.16 -1.77 16 16 C 0.04 0.44 6.71 -2.56 -0.02 0.42 16 17 N -0.52 -5.56 4.84 -224.49 -1.09 -6.65 16 18 C 0.06 0.52 5.87 -4.17 -0.02 0.50 16 19 C -0.11 -1.01 6.06 -26.50 -0.16 -1.17 16 20 C -0.12 -1.19 5.95 -26.48 -0.16 -1.35 16 21 C -0.09 -0.99 5.08 -26.77 -0.14 -1.13 16 22 C 0.07 0.81 2.44 -66.95 -0.16 0.65 16 23 H 0.05 0.50 8.00 -51.93 -0.42 0.08 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 26 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.35 4.84 8.17 -39.29 -0.32 4.52 16 32 H 0.07 0.85 7.63 -51.93 -0.40 0.45 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.26 8.00 -51.93 -0.42 -0.15 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 1.14 7.52 -51.93 -0.39 0.75 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -30.09 328.12 -10.49 -40.58 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.19 Total: -0.57 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.75 Total: -18.25 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.83 Total: -44.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.09 -10.49 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250883548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.142 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds