Wall clock time and date at job start Mon Mar 30 2020 04:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.46903 * 110.99673 * 180.02562 * 12 11 10 14 14 H 1.08994 * 110.43762 * 32.44895 * 13 12 11 15 15 C 1.54990 * 110.48437 * 269.76218 * 13 12 11 16 16 C 1.55190 * 104.93528 * 243.81890 * 15 13 12 17 17 N 1.47094 * 103.52231 * 23.99514 * 16 15 13 18 18 C 1.45671 * 116.53792 * 197.58085 * 17 16 15 19 19 C 1.53621 * 107.79790 * 182.68741 * 18 17 16 20 20 C 1.52814 * 110.70283 * 302.62112 * 19 18 17 21 21 C 1.53663 * 110.61059 * 53.75043 * 20 19 18 22 22 C 1.48722 * 103.70527 * 317.76866 * 17 16 15 23 23 H 1.09000 * 110.93211 * 285.86305 * 22 17 16 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 29 29 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 30 30 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 31 31 H 1.00894 * 110.99951 * 56.04708 * 12 11 10 32 32 H 1.09006 * 110.34960 * 2.68619 * 15 13 12 33 33 H 1.09001 * 110.34888 * 124.95288 * 15 13 12 34 34 H 1.09003 * 110.61231 * 265.48538 * 16 15 13 35 35 H 1.08996 * 110.74765 * 142.56893 * 16 15 13 36 36 H 1.09001 * 109.79326 * 63.10718 * 18 17 16 37 37 H 1.09000 * 109.79173 * 302.26397 * 18 17 16 38 38 H 1.09012 * 109.22752 * 182.30834 * 19 18 17 39 39 H 1.09000 * 109.23149 * 62.94732 * 19 18 17 40 40 H 1.08994 * 109.25117 * 293.45725 * 20 19 18 41 41 H 1.08996 * 109.24739 * 174.03386 * 20 19 18 42 42 H 1.09001 * 109.84274 * 184.35632 * 21 20 19 43 43 H 1.09004 * 109.84302 * 63.38903 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 1 7.9128 -3.2099 0.5484 15 6 8.0522 -4.0805 -1.4520 16 6 8.7758 -5.4464 -1.5902 17 7 8.1297 -6.2829 -0.5673 18 6 8.8391 -7.4924 -0.1723 19 6 7.9627 -8.2403 0.8437 20 6 7.6466 -7.3489 2.0440 21 6 7.0344 -6.0172 1.5825 22 6 8.0108 -5.3764 0.6057 23 1 8.9795 -5.2279 1.0829 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6579 -3.1507 0.8896 29 1 5.9148 -2.1228 -0.8901 30 1 5.9149 -2.1230 0.8899 31 1 5.6656 -4.5376 -0.7825 32 1 7.2303 -4.0131 -2.1648 33 1 8.7555 -3.2618 -1.6048 34 1 9.8404 -5.3395 -1.3822 35 1 8.6205 -5.8668 -2.5838 36 1 9.7922 -7.2282 0.2860 37 1 9.0106 -8.1215 -1.0457 38 1 8.4905 -9.1304 1.1866 39 1 7.0311 -8.5391 0.3631 40 1 8.5653 -7.1499 2.5957 41 1 6.9402 -7.8620 2.6965 42 1 6.8855 -5.3614 2.4404 43 1 6.0814 -6.2004 1.0862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250883548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:39 Heat of formation + Delta-G solvation = -31.833926 kcal Electronic energy + Delta-G solvation = -19002.021887 eV Core-core repulsion = 16273.027161 eV Total energy + Delta-G solvation = -2728.994727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05508 -37.60962 -35.91658 -34.87599 -33.51626 -31.70061 -30.05729 -28.60273 -26.69818 -23.94036 -23.80945 -22.51507 -22.02622 -21.37843 -20.27241 -18.90007 -17.19897 -16.56566 -16.33016 -16.12288 -15.98546 -15.49697 -14.96619 -14.80759 -14.66033 -14.43507 -14.15415 -13.68998 -13.58000 -13.37147 -13.04115 -12.89389 -12.62092 -12.43247 -12.16453 -12.00519 -11.83186 -11.78617 -11.51698 -11.49691 -11.42077 -11.30277 -11.14254 -11.04487 -10.75144 -9.34811 -9.13426 -8.28207 -6.32405 1.36376 1.38868 1.51216 2.37593 3.06861 3.07026 3.27169 3.60904 3.76047 4.04409 4.13541 4.14424 4.23592 4.28587 4.40677 4.44409 4.48999 4.56111 4.64363 4.70030 4.73265 4.78636 4.87844 4.93108 4.95281 5.00972 5.03571 5.10598 5.13280 5.16521 5.19380 5.36471 5.42543 5.55456 5.64242 5.67427 5.68556 5.99568 6.26127 6.32861 6.34710 6.56478 6.76173 7.32072 8.88983 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.003876 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.308937 B = 7222.968411 C = 7600.008501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.089 4.089 11 C 0.072 3.928 12 N -0.675 5.675 13 C 0.088 3.912 14 H 0.082 0.918 15 C -0.148 4.148 16 C 0.047 3.953 17 N -0.534 5.534 18 C 0.055 3.945 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.086 4.086 22 C 0.076 3.924 23 H 0.052 0.948 24 H 0.266 0.734 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.344 0.656 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.848 -12.971 -0.146 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.128 4.128 11 C -0.057 4.057 12 N -0.305 5.305 13 C -0.023 4.023 14 H 0.101 0.899 15 C -0.188 4.188 16 C -0.080 4.080 17 N -0.259 5.259 18 C -0.073 4.073 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.124 4.124 22 C -0.032 4.032 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.182 -13.157 0.338 26.658 hybrid contribution 0.489 1.197 -0.712 1.477 sum 23.671 -11.959 -0.374 26.524 Atomic orbital electron populations 1.70085 1.08407 1.28167 1.52820 1.26093 0.95670 1.03745 0.94101 0.85584 0.79492 0.77884 0.79221 1.19090 1.20973 1.16837 1.21540 0.92380 0.93002 1.50254 0.95373 1.19484 0.93671 0.95146 0.96423 1.21246 0.94275 0.96703 1.00528 1.21884 0.94281 0.89452 1.00047 1.60448 1.06866 1.12821 1.50370 1.22185 0.87804 0.97257 0.95093 0.89938 1.23294 1.00780 0.97429 0.97255 1.22781 0.96133 0.92623 0.96511 1.63918 1.49140 1.05227 1.07656 1.22052 0.94841 0.91675 0.98689 1.21553 0.99994 0.98007 0.95302 1.21642 1.00618 0.96076 0.97628 1.21171 0.98561 0.95327 0.97316 1.22404 0.97663 0.91586 0.91577 0.92966 0.92520 0.96170 0.96363 0.93812 0.93421 0.95245 0.91382 0.83742 0.91590 0.90239 0.93557 0.89980 0.94676 0.90260 0.90374 0.92308 0.92221 0.91812 0.92577 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 2 C 0.00 0.01 5.47 84.66 0.46 0.47 16 3 Si 0.96 44.95 27.47 68.60 1.88 46.83 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.24 -10.63 6.54 99.48 0.65 -9.98 16 7 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.58 5.41 30.60 0.17 -3.41 16 11 C 0.07 2.23 5.55 86.31 0.48 2.71 16 12 N -0.67 -18.07 4.91 -487.60 -2.40 -20.47 16 13 C 0.09 1.92 3.27 45.68 0.15 2.07 16 14 H 0.08 1.78 7.82 -2.39 -0.02 1.77 16 15 C -0.15 -2.79 6.71 32.03 0.21 -2.58 16 16 C 0.05 0.82 6.71 87.02 0.58 1.40 16 17 N -0.53 -10.41 4.84 -864.16 -4.18 -14.59 16 18 C 0.06 0.90 5.87 86.74 0.51 1.41 16 19 C -0.11 -1.79 6.06 30.74 0.19 -1.60 16 20 C -0.12 -2.16 5.95 30.76 0.18 -1.98 16 21 C -0.09 -1.89 5.08 30.57 0.16 -1.73 16 22 C 0.08 1.56 2.44 44.40 0.11 1.67 16 23 H 0.05 1.02 8.00 -2.39 -0.02 1.00 16 24 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 25 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 26 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 31 H 0.34 9.46 8.17 -89.70 -0.73 8.72 16 32 H 0.07 1.38 7.63 -2.38 -0.02 1.36 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.04 0.54 8.00 -2.39 -0.02 0.52 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.71 7.52 -2.39 -0.02 1.69 16 Total: -1.00 -65.39 328.12 -0.67 -66.06 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.16 Total: 16.60 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 3.56 Total: -33.45 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -6.28 Total: -96.04 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -65.39 -0.67 -66.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250883548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.228 kcal (2) G-P(sol) polarization free energy of solvation -65.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds