Wall clock time and date at job start Mon Mar 30 2020 04:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00385 * 2 1 4 4 H 1.48499 * 109.47239 * 270.00833 * 3 2 1 5 5 H 1.48503 * 109.46796 * 30.00539 * 3 2 1 6 6 H 1.48498 * 109.47263 * 150.00078 * 3 2 1 7 7 C 1.37883 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99617 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00477 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47407 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00249 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46953 * 34.99509 * 11 10 9 13 13 C 1.52999 * 109.46934 * 275.00247 * 11 10 9 14 14 C 1.53005 * 109.46888 * 299.99913 * 13 11 10 15 15 C 1.52999 * 109.46721 * 299.99897 * 14 13 11 16 16 C 1.52999 * 109.47355 * 60.00389 * 15 14 13 17 17 C 1.52995 * 109.47646 * 155.00148 * 11 10 9 18 18 H 1.08997 * 109.47769 * 180.02562 * 17 11 10 19 19 C 1.53010 * 109.46723 * 299.99999 * 17 11 10 20 20 H 1.08997 * 110.42278 * 60.85706 * 19 17 11 21 21 C 1.54906 * 110.37296 * 183.16971 * 19 17 11 22 22 C 1.55141 * 101.65274 * 155.89606 * 21 19 17 23 23 C 1.54311 * 103.01761 * 324.34936 * 22 21 19 24 24 N 1.47440 * 107.23978 * 22.28190 * 23 22 21 25 25 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47023 * 59.99570 * 9 7 2 27 27 H 1.09003 * 109.46717 * 299.99895 * 9 7 2 28 28 H 1.00900 * 111.00203 * 56.04311 * 10 9 7 29 29 H 1.09002 * 109.47326 * 59.99537 * 13 11 10 30 30 H 1.08997 * 109.47304 * 180.02562 * 13 11 10 31 31 H 1.08991 * 109.47355 * 59.99753 * 14 13 11 32 32 H 1.09006 * 109.46897 * 180.02562 * 14 13 11 33 33 H 1.09011 * 109.46884 * 180.02562 * 15 14 13 34 34 H 1.08997 * 109.47440 * 299.99828 * 15 14 13 35 35 H 1.09002 * 109.47326 * 179.97438 * 16 15 14 36 36 H 1.08997 * 109.46779 * 59.99365 * 16 15 14 37 37 H 1.09007 * 110.98938 * 37.80233 * 21 19 17 38 38 H 1.09004 * 111.02376 * 274.00908 * 21 19 17 39 39 H 1.09003 * 110.70280 * 205.96238 * 22 21 19 40 40 H 1.09002 * 110.69976 * 82.73052 * 22 21 19 41 41 H 1.09007 * 109.88857 * 262.87562 * 23 22 21 42 42 H 1.09003 * 110.02215 * 141.76619 * 23 22 21 43 43 H 1.00901 * 111.00072 * 123.25293 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 5.4696 -2.6184 -0.0009 12 1 5.8553 -1.7864 0.5884 13 6 5.9828 -2.5064 -1.4379 14 6 5.4413 -3.6741 -2.2653 15 6 5.9163 -4.9945 -1.6555 16 6 5.4031 -5.1065 -0.2185 17 6 5.9445 -3.9388 0.6087 18 1 7.0341 -3.9678 0.6092 19 6 5.4313 -4.0507 2.0458 20 1 4.3415 -4.0385 2.0625 21 6 5.9663 -5.3437 2.7104 22 6 5.8985 -4.9736 4.2155 23 6 6.2576 -3.4729 4.2209 24 7 5.9712 -2.9502 2.8723 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6802 -0.8912 28 1 3.6253 -3.0956 -0.7821 29 1 5.6444 -1.5657 -1.8723 30 1 7.0723 -2.5360 -1.4380 31 1 4.3518 -3.6450 -2.2652 32 1 5.8073 -3.5945 -3.2890 33 1 5.5309 -5.8264 -2.2452 34 1 7.0059 -5.0236 -1.6555 35 1 5.7411 -6.0474 0.2158 36 1 4.3135 -5.0773 -0.2186 37 1 6.9928 -5.5445 2.4034 38 1 5.3211 -6.1936 2.4877 39 1 6.6289 -5.5468 4.7865 40 1 4.8931 -5.1308 4.6060 41 1 7.3154 -3.3455 4.4510 42 1 5.6518 -2.9468 4.9588 43 1 5.3232 -2.1778 2.9139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251296540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:29 Heat of formation + Delta-G solvation = -39.936923 kcal Electronic energy + Delta-G solvation = -19929.529188 eV Core-core repulsion = 17200.183089 eV Total energy + Delta-G solvation = -2729.346099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76867 -38.56157 -35.81321 -34.14196 -32.65062 -31.23911 -30.60049 -28.67709 -27.49248 -23.74475 -23.37323 -23.15139 -21.61710 -20.80135 -19.83590 -18.77936 -17.54783 -17.15110 -16.37712 -15.98994 -15.72003 -15.41654 -14.87695 -14.65321 -14.39328 -14.18804 -13.88953 -13.76863 -13.59753 -13.27580 -12.81691 -12.71701 -12.60610 -12.52376 -12.24808 -12.11721 -11.89719 -11.82068 -11.78997 -11.54077 -11.47099 -11.15001 -10.86627 -10.78267 -10.71643 -9.29165 -8.90361 -8.30435 -6.33367 1.32254 1.34145 1.45629 2.32759 3.04201 3.34475 3.65986 3.75532 3.88461 3.99550 4.06839 4.08599 4.20225 4.42118 4.46066 4.58383 4.64355 4.70714 4.71654 4.79062 4.82575 4.84705 4.92279 4.95271 5.01711 5.08386 5.10641 5.15782 5.21379 5.27459 5.34956 5.35955 5.44836 5.49219 5.54176 5.59034 5.70693 6.04000 6.18379 6.48511 6.64478 6.71823 6.86844 7.32067 8.86379 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.007203 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.837271 B = 3886.391711 C = 4787.635756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.521 4.521 8 H 0.036 0.964 9 C 0.180 3.820 10 N -0.672 5.672 11 C 0.090 3.910 12 H 0.061 0.939 13 C -0.146 4.146 14 C -0.120 4.120 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.043 4.043 18 H 0.075 0.925 19 C 0.089 3.911 20 H 0.038 0.962 21 C -0.120 4.120 22 C -0.140 4.140 23 C 0.044 3.956 24 N -0.690 5.690 25 H 0.266 0.734 26 H 0.020 0.980 27 H -0.023 1.023 28 H 0.333 0.667 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.858 -10.373 2.505 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.559 4.559 8 H 0.054 0.946 9 C 0.051 3.949 10 N -0.304 5.304 11 C -0.021 4.021 12 H 0.079 0.921 13 C -0.185 4.185 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.062 4.062 18 H 0.093 0.907 19 C -0.020 4.020 20 H 0.056 0.944 21 C -0.158 4.158 22 C -0.178 4.178 23 C -0.085 4.085 24 N -0.319 5.319 25 H 0.075 0.925 26 H 0.038 0.962 27 H -0.005 1.005 28 H 0.153 0.847 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.325 -10.375 2.972 20.411 hybrid contribution -1.252 1.354 -0.553 1.925 sum 16.073 -9.021 2.419 18.589 Atomic orbital electron populations 1.70052 1.08092 1.28043 1.52689 1.25825 0.95552 1.03073 0.94357 0.85711 0.79398 0.78773 0.79006 1.19426 1.20708 1.17538 1.21352 0.91559 0.93171 1.49848 0.94579 1.19677 0.93241 0.87909 0.94024 1.60550 1.06768 1.13538 1.49529 1.21573 0.87576 0.98349 0.94562 0.92099 1.22152 1.01536 0.98027 0.96834 1.21517 0.99888 0.95200 0.99158 1.21468 1.01148 0.96420 0.95556 1.21536 1.00378 0.97876 0.95196 1.20935 0.99070 0.93446 0.92777 0.90661 1.22261 0.96710 0.89995 0.93042 0.94396 1.22746 1.01838 0.96675 0.94508 1.22774 1.01856 0.96030 0.97120 1.22631 1.01309 0.94723 0.89844 1.61776 1.48815 1.09742 1.11528 0.92483 0.96224 1.00549 0.84709 0.94181 0.90396 0.93670 0.91126 0.91146 0.90925 0.90676 0.93196 0.90178 0.90554 0.89232 0.92162 0.90508 0.93550 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 2 C 0.01 0.55 5.47 84.66 0.46 1.01 16 3 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 7 C -0.52 -30.52 9.87 25.60 0.25 -30.27 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 9 C 0.18 8.72 4.31 85.56 0.37 9.08 16 10 N -0.67 -27.02 5.04 -495.59 -2.50 -29.52 16 11 C 0.09 2.91 2.16 44.91 0.10 3.01 16 12 H 0.06 2.17 7.35 -2.38 -0.02 2.15 16 13 C -0.15 -4.22 5.52 30.60 0.17 -4.05 16 14 C -0.12 -3.09 5.67 30.60 0.17 -2.92 16 15 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 16 C -0.11 -2.68 4.77 30.59 0.15 -2.54 16 17 C -0.04 -1.14 1.75 -10.79 -0.02 -1.16 16 18 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 19 C 0.09 2.50 2.59 45.39 0.12 2.62 16 20 H 0.04 1.32 7.68 -2.39 -0.02 1.30 16 21 C -0.12 -2.59 5.51 31.98 0.18 -2.41 16 22 C -0.14 -2.83 6.94 31.77 0.22 -2.61 16 23 C 0.04 1.02 7.58 86.64 0.66 1.68 16 24 N -0.69 -19.60 6.40 -482.45 -3.09 -22.69 16 25 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.02 0.97 7.11 -2.39 -0.02 0.95 16 27 H -0.02 -1.11 6.86 -2.39 -0.02 -1.13 16 28 H 0.33 13.54 5.56 -89.69 -0.50 13.04 16 29 H 0.04 1.30 7.45 -2.39 -0.02 1.28 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.36 6.26 -2.39 -0.01 1.35 16 32 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.51 7.28 -2.39 -0.02 1.50 16 36 H 0.05 1.43 7.21 -2.39 -0.02 1.41 16 37 H 0.08 1.58 8.06 -2.38 -0.02 1.56 16 38 H 0.08 1.55 8.03 -2.39 -0.02 1.53 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.33 10.71 8.91 -89.69 -0.80 9.91 16 Total: -1.00 -64.00 319.10 -0.78 -64.77 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.38 Total: 30.80 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 3.00 Total: -30.71 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -5.29 Total: -111.87 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -64.00 -0.78 -64.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251296540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.833 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds