Wall clock time and date at job start Mon Mar 30 2020 04:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47043 * 2 1 4 4 C 1.50696 * 109.47112 * 240.00600 * 2 1 3 5 5 H 1.08006 * 119.99967 * 240.00196 * 4 2 1 6 6 C 1.37876 * 120.00241 * 59.99507 * 4 2 1 7 7 N 1.31509 * 120.00089 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00151 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46926 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47099 * 120.00298 * 8 6 4 11 11 H 1.48497 * 109.47328 * 240.00246 * 8 6 4 12 12 N 1.46900 * 109.47049 * 120.00206 * 2 1 3 13 13 C 1.46900 * 111.00019 * 62.10745 * 12 2 1 14 14 C 1.46895 * 110.99885 * 298.14957 * 12 2 1 15 15 H 1.09002 * 109.47187 * 48.95112 * 14 12 2 16 16 C 1.52995 * 109.47565 * 288.94225 * 14 12 2 17 17 N 1.46908 * 109.46907 * 64.51283 * 16 14 12 18 18 C 1.50703 * 109.46819 * 168.94459 * 14 12 2 19 19 C 1.39874 * 126.04058 * 43.85671 * 18 14 12 20 20 N 1.30839 * 108.20094 * 179.97438 * 19 18 14 21 21 N 1.40085 * 108.20571 * 0.02562 * 20 19 18 22 22 C 1.46501 * 126.03432 * 179.73767 * 21 20 19 23 23 C 1.34945 * 107.92662 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.47155 * 59.99474 * 1 2 3 25 25 H 1.08992 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47143 * 300.00049 * 1 2 3 27 27 H 0.97001 * 120.00152 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46967 * 290.76933 * 13 12 2 29 29 H 1.09005 * 109.46749 * 50.76776 * 13 12 2 30 30 H 1.08991 * 109.47170 * 170.76433 * 13 12 2 31 31 H 1.08998 * 109.47528 * 184.50781 * 16 14 12 32 32 H 1.08992 * 109.47453 * 304.51411 * 16 14 12 33 33 H 1.00901 * 110.99824 * 56.04660 * 17 16 14 34 34 H 1.00902 * 110.99677 * 180.02562 * 17 16 14 35 35 H 1.07999 * 125.89734 * 359.96053 * 19 18 14 36 36 H 1.08997 * 109.47163 * 90.02482 * 22 21 20 37 37 H 1.08994 * 109.47098 * 210.02462 * 22 21 20 38 38 H 1.09000 * 109.47102 * 330.02693 * 22 21 20 39 39 H 1.08004 * 126.12341 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1454 -2.2874 -3.6039 10 1 1.1659 -1.5863 -4.8162 11 1 3.1465 -0.1871 -4.8166 12 7 2.0196 -0.6925 1.1994 13 6 1.5902 -2.0973 1.2084 14 6 1.5851 -0.0014 2.4206 15 1 0.5157 0.2017 2.3622 16 6 2.3480 1.3175 2.5592 17 7 1.9904 2.2092 1.4477 18 6 1.8662 -0.8724 3.6178 19 6 3.0395 -1.5975 3.8507 20 7 2.9107 -2.2286 4.9895 21 7 1.6493 -1.9250 5.5179 22 6 1.0992 -2.4285 6.7789 23 6 1.0283 -1.0912 4.6576 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7093 1.1620 -3.4843 28 1 0.5123 -2.1468 1.3626 29 1 1.8424 -2.5604 0.2543 30 1 2.0974 -2.6272 2.0146 31 1 2.0849 1.7920 3.5046 32 1 3.4199 1.1213 2.5371 33 1 0.9927 2.3548 1.4077 34 1 2.4820 3.0877 1.5164 35 1 3.9025 -1.6309 3.2022 36 1 1.3641 -1.7481 7.5882 37 1 0.0141 -2.4953 6.7010 38 1 1.5102 -3.4166 6.9858 39 1 0.0394 -0.6737 4.7772 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251436358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:45 Heat of formation + Delta-G solvation = 107.982158 kcal Electronic energy + Delta-G solvation = -19535.347004 eV Core-core repulsion = 16708.874815 eV Total energy + Delta-G solvation = -2826.472190 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04618 -37.63149 -33.79482 -33.13701 -32.18912 -30.53036 -28.50533 -27.25664 -25.93172 -24.96759 -23.66576 -21.81067 -20.84330 -19.97168 -18.51614 -16.69852 -15.83664 -15.47804 -15.18295 -14.73544 -14.48027 -14.12417 -13.97663 -13.33174 -12.97711 -12.85647 -12.66269 -12.42727 -12.32118 -11.86593 -11.48191 -11.21748 -10.90210 -10.78414 -10.58588 -10.51382 -10.35366 -9.96540 -9.77769 -9.52465 -9.16105 -8.81123 -8.26333 -8.07647 -7.39819 -6.79707 -5.78097 -3.76996 2.07884 2.68838 3.10236 3.41716 3.49436 3.54331 4.55680 4.61384 4.96214 5.04572 5.13033 5.18574 5.27443 5.44855 5.54672 5.81052 5.86063 5.89360 6.05178 6.10183 6.35738 6.48804 6.60789 6.75563 6.91431 6.95918 7.06690 7.14740 7.18015 7.50399 7.71637 7.87985 7.93904 7.98393 8.02749 8.10055 8.62792 8.80337 8.94672 9.31570 9.84240 11.28746 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032627 B = 0.005881 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.971595 B = 4760.002349 C = 5135.234111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.181 3.819 3 H 0.116 0.884 4 C -0.490 4.490 5 H 0.056 0.944 6 C 0.056 3.944 7 N -0.894 5.894 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.287 1.287 12 N -0.516 5.516 13 C 0.035 3.965 14 C 0.155 3.845 15 H 0.039 0.961 16 C 0.083 3.917 17 N -0.823 5.823 18 C -0.209 4.209 19 C 0.078 3.922 20 N -0.310 5.310 21 N -0.387 5.387 22 C 0.107 3.893 23 C 0.043 3.957 24 H 0.084 0.916 25 H 0.016 0.984 26 H 0.001 0.999 27 H 0.254 0.746 28 H 0.004 0.996 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.338 0.662 34 H 0.328 0.672 35 H 0.186 0.814 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -0.897 15.869 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.075 3.925 3 H 0.132 0.868 4 C -0.529 4.529 5 H 0.074 0.926 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.213 1.213 12 N -0.240 5.240 13 C -0.114 4.114 14 C 0.044 3.956 15 H 0.057 0.943 16 C -0.048 4.048 17 N -0.353 5.353 18 C -0.222 4.222 19 C -0.109 4.109 20 N -0.131 5.131 21 N -0.170 5.170 22 C -0.035 4.035 23 C -0.102 4.102 24 H 0.103 0.897 25 H 0.035 0.965 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.203 0.797 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.338 -2.180 16.242 16.391 hybrid contribution -1.625 0.544 -0.697 1.851 sum -1.963 -1.636 15.545 15.754 Atomic orbital electron populations 1.22391 1.02340 0.98234 0.99670 1.20168 0.88753 0.99191 0.84387 0.86760 1.21294 1.29552 1.11716 0.90331 0.92571 1.24838 0.95704 0.95256 0.98514 1.69903 1.37792 1.23214 1.22521 0.86626 0.78392 0.79726 0.83697 1.20021 1.21594 1.21303 1.62435 1.58955 1.01013 1.01568 1.22255 0.96215 0.91727 1.01173 1.19880 0.96505 0.91393 0.87824 0.94294 1.21721 1.00858 0.92266 0.89948 1.58909 1.12230 1.17682 1.46430 1.20156 0.95584 1.07481 0.98930 1.23811 0.99111 0.94627 0.93315 1.77324 0.98327 1.24746 1.12716 1.48334 1.12771 1.37682 1.18217 1.21719 0.98709 1.00684 0.82362 1.22223 0.99294 0.96729 0.91940 0.89747 0.96471 0.97977 0.93609 0.97755 0.91007 0.94118 0.96985 0.90663 0.84924 0.85899 0.79707 0.91308 0.89962 0.89679 0.81661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.32 37.16 0.31 -3.74 16 2 C 0.18 4.45 1.98 -68.87 -0.14 4.32 16 3 H 0.12 2.96 4.92 -51.93 -0.26 2.70 16 4 C -0.49 -13.59 7.81 -34.44 -0.27 -13.86 16 5 H 0.06 1.59 6.58 -52.48 -0.35 1.24 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 N -0.52 -10.98 4.49 -229.69 -1.03 -12.01 16 13 C 0.04 0.73 8.06 60.06 0.48 1.22 16 14 C 0.15 2.75 2.17 -68.87 -0.15 2.60 16 15 H 0.04 0.73 5.85 -51.93 -0.30 0.43 16 16 C 0.08 1.36 6.37 -3.82 -0.02 1.34 16 17 N -0.82 -13.98 6.22 -10.37 -0.06 -14.05 16 18 C -0.21 -3.35 3.77 -105.05 -0.40 -3.75 16 19 C 0.08 1.27 9.94 -17.36 -0.17 1.09 16 20 N -0.31 -4.95 12.58 30.63 0.39 -4.57 16 21 N -0.39 -5.17 4.01 -68.16 -0.27 -5.44 16 22 C 0.11 0.89 11.47 59.85 0.69 1.58 16 23 C 0.04 0.60 11.39 -17.22 -0.20 0.40 16 24 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 25 H 0.02 0.41 6.66 -51.93 -0.35 0.06 16 26 H 0.00 0.03 6.01 -51.93 -0.31 -0.28 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.00 0.08 6.85 -51.93 -0.36 -0.27 16 29 H 0.07 1.64 6.07 -51.93 -0.32 1.32 16 30 H 0.04 0.78 5.67 -51.93 -0.29 0.49 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.34 5.65 8.77 -39.29 -0.34 5.31 16 34 H 0.33 4.75 9.08 -39.29 -0.36 4.40 16 35 H 0.19 2.94 8.06 -52.49 -0.42 2.51 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.17 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -31.39 303.72 -6.40 -37.79 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.64 Total: 9.14 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.04 Total: -7.31 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.36 Total: -61.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.39 -6.40 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251436358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.770 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds