Wall clock time and date at job start Mon Mar 30 2020 04:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47043 * 2 1 4 4 C 1.50696 * 109.47112 * 240.00600 * 2 1 3 5 5 H 1.08006 * 119.99967 * 240.00196 * 4 2 1 6 6 C 1.37876 * 120.00241 * 59.99507 * 4 2 1 7 7 N 1.31509 * 120.00089 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00151 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46926 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47099 * 120.00298 * 8 6 4 11 11 H 1.48497 * 109.47328 * 240.00246 * 8 6 4 12 12 N 1.46900 * 109.47049 * 120.00206 * 2 1 3 13 13 C 1.46900 * 111.00019 * 62.10745 * 12 2 1 14 14 C 1.46895 * 110.99885 * 298.14957 * 12 2 1 15 15 H 1.09002 * 109.47187 * 48.95112 * 14 12 2 16 16 C 1.52995 * 109.47565 * 288.94225 * 14 12 2 17 17 N 1.46908 * 109.46907 * 64.51283 * 16 14 12 18 18 C 1.50703 * 109.46819 * 168.94459 * 14 12 2 19 19 C 1.39874 * 126.04058 * 43.85671 * 18 14 12 20 20 N 1.30839 * 108.20094 * 179.97438 * 19 18 14 21 21 N 1.40085 * 108.20571 * 0.02562 * 20 19 18 22 22 C 1.46501 * 126.03432 * 179.73767 * 21 20 19 23 23 C 1.34945 * 107.92662 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.47155 * 59.99474 * 1 2 3 25 25 H 1.08992 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47143 * 300.00049 * 1 2 3 27 27 H 0.97001 * 120.00152 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46967 * 290.76933 * 13 12 2 29 29 H 1.09005 * 109.46749 * 50.76776 * 13 12 2 30 30 H 1.08991 * 109.47170 * 170.76433 * 13 12 2 31 31 H 1.08998 * 109.47528 * 184.50781 * 16 14 12 32 32 H 1.08992 * 109.47453 * 304.51411 * 16 14 12 33 33 H 1.00901 * 110.99824 * 56.04660 * 17 16 14 34 34 H 1.00902 * 110.99677 * 180.02562 * 17 16 14 35 35 H 1.07999 * 125.89734 * 359.96053 * 19 18 14 36 36 H 1.08997 * 109.47163 * 90.02482 * 22 21 20 37 37 H 1.08994 * 109.47098 * 210.02462 * 22 21 20 38 38 H 1.09000 * 109.47102 * 330.02693 * 22 21 20 39 39 H 1.08004 * 126.12341 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1454 -2.2874 -3.6039 10 1 1.1659 -1.5863 -4.8162 11 1 3.1465 -0.1871 -4.8166 12 7 2.0196 -0.6925 1.1994 13 6 1.5902 -2.0973 1.2084 14 6 1.5851 -0.0014 2.4206 15 1 0.5157 0.2017 2.3622 16 6 2.3480 1.3175 2.5592 17 7 1.9904 2.2092 1.4477 18 6 1.8662 -0.8724 3.6178 19 6 3.0395 -1.5975 3.8507 20 7 2.9107 -2.2286 4.9895 21 7 1.6493 -1.9250 5.5179 22 6 1.0992 -2.4285 6.7789 23 6 1.0283 -1.0912 4.6576 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7093 1.1620 -3.4843 28 1 0.5123 -2.1468 1.3626 29 1 1.8424 -2.5604 0.2543 30 1 2.0974 -2.6272 2.0146 31 1 2.0849 1.7920 3.5046 32 1 3.4199 1.1213 2.5371 33 1 0.9927 2.3548 1.4077 34 1 2.4820 3.0877 1.5164 35 1 3.9025 -1.6309 3.2022 36 1 1.3641 -1.7481 7.5882 37 1 0.0141 -2.4953 6.7010 38 1 1.5102 -3.4166 6.9858 39 1 0.0394 -0.6737 4.7772 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251436358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:44 Heat of formation + Delta-G solvation = 84.664066 kcal Electronic energy + Delta-G solvation = -19536.358153 eV Core-core repulsion = 16708.874815 eV Total energy + Delta-G solvation = -2827.483338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17981 -39.21570 -35.44697 -34.32646 -33.81773 -31.92697 -30.09651 -28.63454 -27.17870 -26.94146 -25.27795 -23.20398 -21.96591 -21.41151 -20.05796 -18.14109 -17.54405 -16.98954 -16.35742 -16.16990 -16.10215 -15.60066 -15.08599 -14.90216 -14.49143 -14.32600 -13.85376 -13.61527 -13.50151 -13.33167 -13.09522 -12.91541 -12.61228 -12.53267 -12.43249 -12.33972 -11.94108 -11.76562 -11.44723 -11.27266 -10.74093 -10.33454 -10.24947 -9.22040 -8.91921 -8.47978 -7.90796 -5.94917 0.99891 1.44447 1.47272 1.57505 1.77269 1.89002 2.54609 3.37629 3.53404 3.73671 3.99658 4.07784 4.41017 4.46228 4.49089 4.51824 4.62430 4.71210 4.72206 4.80373 4.93995 4.96733 5.04874 5.12307 5.16252 5.29627 5.40511 5.53919 5.74024 5.82141 6.03736 6.17535 6.22102 6.47479 6.55655 6.76458 6.80169 6.96874 7.12324 7.25363 7.69948 9.14050 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032627 B = 0.005881 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.971595 B = 4760.002349 C = 5135.234111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.185 3.815 3 H 0.107 0.893 4 C -0.506 4.506 5 H 0.042 0.958 6 C 0.013 3.987 7 N -0.914 5.914 8 Si 0.942 3.058 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.523 5.523 13 C 0.049 3.951 14 C 0.161 3.839 15 H 0.034 0.966 16 C 0.090 3.910 17 N -0.842 5.842 18 C -0.235 4.235 19 C 0.065 3.935 20 N -0.333 5.333 21 N -0.380 5.380 22 C 0.095 3.905 23 C 0.060 3.940 24 H 0.056 0.944 25 H 0.004 0.996 26 H 0.026 0.974 27 H 0.254 0.746 28 H 0.000 1.000 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.339 0.661 34 H 0.342 0.658 35 H 0.177 0.823 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -0.976 17.625 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.078 3.922 3 H 0.124 0.876 4 C -0.545 4.545 5 H 0.060 0.940 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.770 3.230 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.209 1.209 12 N -0.247 5.247 13 C -0.100 4.100 14 C 0.051 3.949 15 H 0.052 0.948 16 C -0.041 4.041 17 N -0.373 5.373 18 C -0.247 4.247 19 C -0.120 4.120 20 N -0.155 5.155 21 N -0.163 5.163 22 C -0.044 4.044 23 C -0.088 4.088 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.194 0.806 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.010 -2.270 18.029 18.200 hybrid contribution -1.434 0.552 -1.108 1.894 sum -2.444 -1.717 16.921 17.183 Atomic orbital electron populations 1.22173 1.02140 0.97261 0.99454 1.19984 0.88708 0.98705 0.84817 0.87622 1.21607 1.29379 1.11491 0.92064 0.93963 1.25462 0.96078 0.96007 1.00915 1.70011 1.38470 1.24075 1.22950 0.85759 0.77873 0.78712 0.80694 1.20037 1.21271 1.20911 1.62310 1.59223 1.01083 1.02081 1.22084 0.95951 0.91769 1.00203 1.19833 0.96133 0.92019 0.86891 0.94796 1.21646 0.99911 0.91697 0.90845 1.58788 1.12530 1.18734 1.47207 1.20005 0.96465 1.08806 0.99450 1.23734 0.99285 0.95300 0.93705 1.77270 1.00094 1.25347 1.12812 1.48739 1.11754 1.36681 1.19127 1.22155 1.00362 1.01204 0.80704 1.22654 0.99877 0.95434 0.90793 0.92508 0.97649 0.95499 0.93655 0.98179 0.93641 0.92582 0.94415 0.91830 0.84817 0.84427 0.80568 0.89432 0.87043 0.89312 0.78359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.31 8.32 71.98 0.60 -6.71 16 2 C 0.18 9.15 1.98 44.17 0.09 9.24 16 3 H 0.11 5.50 4.92 -2.38 -0.01 5.49 16 4 C -0.51 -28.51 7.81 25.60 0.20 -28.31 16 5 H 0.04 2.44 6.58 -2.91 -0.02 2.42 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.91 -52.81 11.32 21.45 0.24 -52.57 16 8 Si 0.94 45.36 29.54 68.60 2.03 47.39 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 N -0.52 -22.25 4.49 -880.62 -3.95 -26.20 16 13 C 0.05 2.05 8.06 127.69 1.03 3.08 16 14 C 0.16 5.54 2.17 44.17 0.10 5.63 16 15 H 0.03 1.21 5.85 -2.39 -0.01 1.20 16 16 C 0.09 2.82 6.37 86.30 0.55 3.37 16 17 N -0.84 -27.88 6.22 -186.72 -1.16 -29.04 16 18 C -0.23 -7.11 3.77 -20.14 -0.08 -7.19 16 19 C 0.07 2.07 9.94 85.24 0.85 2.92 16 20 N -0.33 -10.14 12.58 -57.02 -0.72 -10.86 16 21 N -0.38 -9.03 4.01 -369.57 -1.48 -10.51 16 22 C 0.10 1.23 11.47 127.77 1.47 2.70 16 23 C 0.06 1.44 11.39 83.54 0.95 2.39 16 24 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 25 H 0.00 0.22 6.66 -2.39 -0.02 0.21 16 26 H 0.03 1.12 6.01 -2.39 -0.01 1.11 16 27 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.00 -0.01 6.85 -2.39 -0.02 -0.03 16 29 H 0.04 2.11 6.07 -2.38 -0.01 2.10 16 30 H 0.06 2.16 5.67 -2.39 -0.01 2.14 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.34 10.99 8.77 -89.69 -0.79 10.20 16 34 H 0.34 9.57 9.08 -89.69 -0.81 8.76 16 35 H 0.18 5.69 8.06 -2.91 -0.02 5.67 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.20 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -67.25 303.72 0.63 -66.62 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.53 Total: 26.88 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 6.20 Total: -11.70 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -7.07 Total: -129.19 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -67.25 0.63 -66.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251436358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.287 kcal (2) G-P(sol) polarization free energy of solvation -67.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds