Wall clock time and date at job start Mon Mar 30 2020 04:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00051 * 2 1 4 4 H 1.48496 * 109.47412 * 270.00675 * 3 2 1 5 5 H 1.48503 * 109.47107 * 30.00760 * 3 2 1 6 6 H 1.48505 * 109.47051 * 150.00205 * 3 2 1 7 7 C 1.38815 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99611 * 179.72483 * 9 7 2 11 11 H 1.08998 * 109.51067 * 325.19848 * 10 9 7 12 12 C 1.53126 * 109.50367 * 85.28125 * 10 9 7 13 13 C 1.53118 * 109.16011 * 177.59031 * 12 10 9 14 14 C 1.53034 * 109.28306 * 302.34621 * 13 12 10 15 15 N 1.46845 * 109.52310 * 59.17688 * 14 13 12 16 16 C 1.46901 * 111.00081 * 174.16148 * 15 14 13 17 17 C 1.53003 * 109.46871 * 294.09132 * 16 15 14 18 18 C 1.54265 * 110.03119 * 294.24356 * 17 16 15 19 19 C 1.54887 * 104.19980 * 217.10725 * 18 17 16 20 20 C 1.54892 * 102.74694 * 37.94695 * 19 18 17 21 21 C 1.53877 * 110.02707 * 177.08349 * 17 16 15 22 22 C 1.46852 * 111.20260 * 298.26130 * 15 14 13 23 23 H 0.96997 * 119.99937 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99776 * 0.02562 * 9 7 2 25 25 H 1.08998 * 109.51935 * 297.49728 * 12 10 9 26 26 H 1.09005 * 109.51979 * 57.62016 * 12 10 9 27 27 H 1.09005 * 109.50390 * 62.29064 * 13 12 10 28 28 H 1.09005 * 109.49814 * 182.36275 * 13 12 10 29 29 H 1.08996 * 109.46053 * 179.19800 * 14 13 12 30 30 H 1.09003 * 109.45902 * 299.16597 * 14 13 12 31 31 H 1.09003 * 109.46698 * 54.08749 * 16 15 14 32 32 H 1.08993 * 109.47237 * 174.08674 * 16 15 14 33 33 H 1.08995 * 110.01935 * 55.69104 * 17 16 15 34 34 H 1.08996 * 110.48921 * 335.79342 * 18 17 16 35 35 H 1.09007 * 110.47979 * 98.42934 * 18 17 16 36 36 H 1.09001 * 110.75732 * 279.63569 * 19 18 17 37 37 H 1.08997 * 110.91474 * 156.33040 * 19 18 17 38 38 H 1.08996 * 110.48945 * 203.37814 * 20 19 18 39 39 H 1.09004 * 110.48598 * 80.72872 * 20 19 18 40 40 H 1.08996 * 110.03072 * 238.56301 * 21 17 16 41 41 H 1.08997 * 110.03637 * 0.02562 * 21 17 16 42 42 H 1.09000 * 109.45668 * 301.72964 * 22 15 14 43 43 H 1.08997 * 109.45978 * 181.75460 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0072 11 1 2.9680 -3.5486 -0.5974 12 6 2.4230 -4.0439 1.4286 13 6 3.1349 -5.3995 1.4181 14 6 2.2250 -6.4431 0.7664 15 7 1.9052 -6.0274 -0.6052 16 6 1.1473 -7.0709 -1.3084 17 6 2.0321 -8.3050 -1.4959 18 6 3.2042 -7.9759 -2.4433 19 6 3.3954 -9.2687 -3.2746 20 6 1.9401 -9.7497 -3.4981 21 6 1.2283 -9.4328 -2.1666 22 6 1.1792 -4.7509 -0.6176 23 1 -0.4850 0.8400 0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 3.0844 -3.2883 1.8526 26 1 1.5159 -4.1123 2.0292 27 1 4.0619 -5.3193 0.8502 28 1 3.3600 -5.7002 2.4414 29 1 2.7346 -7.4063 0.7445 30 1 1.3041 -6.5326 1.3428 31 1 0.2687 -7.3395 -0.7219 32 1 0.8333 -6.6975 -2.2831 33 1 2.4134 -8.6407 -0.5316 34 1 2.9465 -7.1393 -3.0928 35 1 4.1054 -7.7529 -1.8720 36 1 3.9648 -10.0088 -2.7123 37 1 3.8807 -9.0513 -4.2260 38 1 1.9187 -10.8212 -3.6966 39 1 1.4781 -9.1995 -4.3179 40 1 1.2203 -10.3162 -1.5281 41 1 0.2081 -9.1008 -2.3589 42 1 0.2633 -4.8484 -0.0348 43 1 0.9294 -4.4852 -1.6448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258627985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:07 Heat of formation + Delta-G solvation = -10.116494 kcal Electronic energy + Delta-G solvation = -19215.478660 eV Core-core repulsion = 16487.425672 eV Total energy + Delta-G solvation = -2728.052988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.25254 -37.66019 -34.58895 -32.63360 -31.05404 -29.62999 -28.68964 -27.82495 -24.98345 -23.68117 -22.31223 -21.38820 -20.66226 -19.31592 -19.18078 -17.06471 -16.32146 -15.34877 -15.07048 -14.65731 -14.29040 -14.14918 -13.75431 -13.36959 -13.19945 -13.15121 -12.83716 -12.55456 -12.15099 -11.53495 -11.22901 -11.11939 -11.01982 -10.91540 -10.88379 -10.76575 -10.72265 -10.64762 -10.55631 -10.19069 -10.14669 -10.13927 -9.67041 -9.53101 -8.83170 -7.99470 -6.91725 -5.73004 -3.01424 3.46244 3.51254 3.52907 4.06844 4.58724 4.61568 4.66208 4.71353 5.11975 5.27004 5.33215 5.38744 5.44324 5.53910 5.55878 5.59801 5.61420 5.71963 5.73922 5.78875 5.79928 5.84053 5.89588 5.96691 6.03363 6.05843 6.06330 6.23641 6.29009 6.31385 6.33612 6.45714 6.49325 6.58028 6.68376 7.01770 7.15164 7.42004 7.46787 7.75298 8.46049 9.56615 10.14889 10.49474 11.49981 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034757 B = 0.004231 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.409241 B = 6615.609559 C = 6818.893293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.055 0.945 12 C -0.136 4.136 13 C -0.114 4.114 14 C 0.057 3.943 15 N -0.532 5.532 16 C 0.063 3.937 17 C -0.089 4.089 18 C -0.104 4.104 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.121 4.121 22 C 0.054 3.946 23 H 0.254 0.746 24 H 0.382 0.618 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 -19.787 -3.025 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.366 5.366 10 C 0.073 3.927 11 H 0.073 0.927 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.071 4.071 15 N -0.257 5.257 16 C -0.065 4.065 17 C -0.108 4.108 18 C -0.141 4.141 19 C -0.167 4.167 20 C -0.161 4.161 21 C -0.159 4.159 22 C -0.074 4.074 23 H 0.064 0.936 24 H 0.215 0.785 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.703 -19.547 -3.273 20.370 hybrid contribution -0.742 0.845 0.549 1.252 sum 3.961 -18.702 -2.725 19.310 Atomic orbital electron populations 1.69664 1.05115 1.25562 1.58036 1.24733 0.95501 0.97644 1.03202 0.86195 0.78650 0.83902 0.77503 1.21748 1.21858 1.20767 1.19248 0.91008 0.84012 1.42240 0.91139 1.42389 1.05747 0.99846 1.88622 1.20156 0.94501 0.85241 0.92807 0.92731 1.22298 0.99701 0.95056 1.00630 1.21571 0.98969 0.95675 0.99068 1.22099 0.98204 0.98259 0.88516 1.61866 1.45408 1.02762 1.15660 1.22224 0.94037 0.91548 0.98711 1.21806 0.95801 0.94007 0.99149 1.22248 0.97830 0.96794 0.97266 1.22552 0.96338 0.97896 0.99905 1.22346 0.95980 1.00320 0.97497 1.22189 0.99253 0.98002 0.96468 1.22379 0.95166 0.88858 1.00998 0.93591 0.78482 0.92088 0.93156 0.91601 0.92578 0.91351 0.95549 0.95445 0.90872 0.91168 0.91183 0.91672 0.91995 0.91917 0.92200 0.91745 0.92141 0.91853 0.95420 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.59 9.93 -15.06 -0.15 -6.74 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.59 5.12 -53.34 -0.27 -18.87 16 10 C 0.18 3.79 2.93 -67.85 -0.20 3.59 16 11 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 12 C -0.14 -2.55 5.59 -26.61 -0.15 -2.70 16 13 C -0.11 -1.70 6.09 -26.65 -0.16 -1.86 16 14 C 0.06 0.79 5.30 -3.84 -0.02 0.77 16 15 N -0.53 -7.90 4.43 -234.67 -1.04 -8.93 16 16 C 0.06 0.79 4.01 -3.82 -0.02 0.78 16 17 C -0.09 -0.95 2.85 -89.50 -0.25 -1.20 16 18 C -0.10 -1.12 6.14 -25.07 -0.15 -1.28 16 19 C -0.13 -1.17 6.91 -24.74 -0.17 -1.34 16 20 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 21 C -0.12 -1.11 6.46 -25.61 -0.17 -1.28 16 22 C 0.05 0.97 4.93 -3.83 -0.02 0.95 16 23 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.38 10.38 7.80 -40.82 -0.32 10.06 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.83 6.15 -51.93 -0.32 0.51 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 33 H 0.07 0.76 6.29 -51.93 -0.33 0.43 16 34 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.34 8.01 -51.93 -0.42 0.92 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -29.37 328.61 -10.44 -39.81 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.05 Total: 5.33 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.73 Total: -12.08 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.59 Total: -55.65 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.37 -10.44 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258627985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.693 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds