Wall clock time and date at job start Mon Mar 30 2020 04:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00051 * 2 1 4 4 H 1.48496 * 109.47412 * 270.00675 * 3 2 1 5 5 H 1.48503 * 109.47107 * 30.00760 * 3 2 1 6 6 H 1.48505 * 109.47051 * 150.00205 * 3 2 1 7 7 C 1.38815 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99611 * 179.72483 * 9 7 2 11 11 H 1.08998 * 109.51067 * 325.19848 * 10 9 7 12 12 C 1.53126 * 109.50367 * 85.28125 * 10 9 7 13 13 C 1.53118 * 109.16011 * 177.59031 * 12 10 9 14 14 C 1.53034 * 109.28306 * 302.34621 * 13 12 10 15 15 N 1.46845 * 109.52310 * 59.17688 * 14 13 12 16 16 C 1.46901 * 111.00081 * 174.16148 * 15 14 13 17 17 C 1.53003 * 109.46871 * 294.09132 * 16 15 14 18 18 C 1.54265 * 110.03119 * 294.24356 * 17 16 15 19 19 C 1.54887 * 104.19980 * 217.10725 * 18 17 16 20 20 C 1.54892 * 102.74694 * 37.94695 * 19 18 17 21 21 C 1.53877 * 110.02707 * 177.08349 * 17 16 15 22 22 C 1.46852 * 111.20260 * 298.26130 * 15 14 13 23 23 H 0.96997 * 119.99937 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99776 * 0.02562 * 9 7 2 25 25 H 1.08998 * 109.51935 * 297.49728 * 12 10 9 26 26 H 1.09005 * 109.51979 * 57.62016 * 12 10 9 27 27 H 1.09005 * 109.50390 * 62.29064 * 13 12 10 28 28 H 1.09005 * 109.49814 * 182.36275 * 13 12 10 29 29 H 1.08996 * 109.46053 * 179.19800 * 14 13 12 30 30 H 1.09003 * 109.45902 * 299.16597 * 14 13 12 31 31 H 1.09003 * 109.46698 * 54.08749 * 16 15 14 32 32 H 1.08993 * 109.47237 * 174.08674 * 16 15 14 33 33 H 1.08995 * 110.01935 * 55.69104 * 17 16 15 34 34 H 1.08996 * 110.48921 * 335.79342 * 18 17 16 35 35 H 1.09007 * 110.47979 * 98.42934 * 18 17 16 36 36 H 1.09001 * 110.75732 * 279.63569 * 19 18 17 37 37 H 1.08997 * 110.91474 * 156.33040 * 19 18 17 38 38 H 1.08996 * 110.48945 * 203.37814 * 20 19 18 39 39 H 1.09004 * 110.48598 * 80.72872 * 20 19 18 40 40 H 1.08996 * 110.03072 * 238.56301 * 21 17 16 41 41 H 1.08997 * 110.03637 * 0.02562 * 21 17 16 42 42 H 1.09000 * 109.45668 * 301.72964 * 22 15 14 43 43 H 1.08997 * 109.45978 * 181.75460 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0072 11 1 2.9680 -3.5486 -0.5974 12 6 2.4230 -4.0439 1.4286 13 6 3.1349 -5.3995 1.4181 14 6 2.2250 -6.4431 0.7664 15 7 1.9052 -6.0274 -0.6052 16 6 1.1473 -7.0709 -1.3084 17 6 2.0321 -8.3050 -1.4959 18 6 3.2042 -7.9759 -2.4433 19 6 3.3954 -9.2687 -3.2746 20 6 1.9401 -9.7497 -3.4981 21 6 1.2283 -9.4328 -2.1666 22 6 1.1792 -4.7509 -0.6176 23 1 -0.4850 0.8400 0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 3.0844 -3.2883 1.8526 26 1 1.5159 -4.1123 2.0292 27 1 4.0619 -5.3193 0.8502 28 1 3.3600 -5.7002 2.4414 29 1 2.7346 -7.4063 0.7445 30 1 1.3041 -6.5326 1.3428 31 1 0.2687 -7.3395 -0.7219 32 1 0.8333 -6.6975 -2.2831 33 1 2.4134 -8.6407 -0.5316 34 1 2.9465 -7.1393 -3.0928 35 1 4.1054 -7.7529 -1.8720 36 1 3.9648 -10.0088 -2.7123 37 1 3.8807 -9.0513 -4.2260 38 1 1.9187 -10.8212 -3.6966 39 1 1.4781 -9.1995 -4.3179 40 1 1.2203 -10.3162 -1.5281 41 1 0.2081 -9.1008 -2.3589 42 1 0.2633 -4.8484 -0.0348 43 1 0.9294 -4.4852 -1.6448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258627985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:07 Heat of formation + Delta-G solvation = -27.369198 kcal Electronic energy + Delta-G solvation = -19216.226794 eV Core-core repulsion = 16487.425672 eV Total energy + Delta-G solvation = -2728.801122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41655 -38.73194 -36.30387 -34.18709 -32.81115 -30.75551 -29.59676 -29.31955 -26.22471 -25.55805 -23.63618 -22.76694 -21.43575 -20.69056 -20.20824 -19.14290 -17.43147 -16.62890 -16.29953 -16.02688 -15.58683 -15.54571 -15.22907 -14.84981 -14.52629 -14.38057 -14.10871 -13.92736 -13.47179 -12.96539 -12.86543 -12.59701 -12.28269 -12.09987 -12.04296 -11.93857 -11.85414 -11.84772 -11.76958 -11.60000 -11.57647 -11.38445 -11.24604 -10.93244 -10.85817 -9.22533 -9.01821 -7.94808 -5.23774 1.46738 1.48705 1.57050 2.53944 2.90840 3.38510 3.76171 3.81949 3.87535 3.95752 4.03602 4.12952 4.23008 4.34832 4.43861 4.49313 4.58646 4.63176 4.67796 4.69863 4.77880 4.81572 4.87414 4.89851 4.99464 4.99952 5.06487 5.13205 5.15976 5.18670 5.21497 5.32889 5.44264 5.48811 5.51142 5.55053 5.59386 5.62657 6.13100 6.25080 6.29303 7.32868 8.07817 8.31971 9.28982 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034757 B = 0.004231 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.409241 B = 6615.609559 C = 6818.893293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.237 4.237 8 H 0.074 0.926 9 N -0.738 5.738 10 C 0.180 3.820 11 H 0.041 0.959 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.058 3.942 15 N -0.534 5.534 16 C 0.064 3.936 17 C -0.083 4.083 18 C -0.105 4.105 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.119 4.119 22 C 0.069 3.931 23 H 0.251 0.749 24 H 0.370 0.630 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.025 0.975 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -21.681 -2.875 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.378 5.378 10 C 0.071 3.929 11 H 0.060 0.940 12 C -0.169 4.169 13 C -0.144 4.144 14 C -0.069 4.069 15 N -0.259 5.259 16 C -0.064 4.064 17 C -0.102 4.102 18 C -0.143 4.143 19 C -0.163 4.163 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.060 4.060 23 H 0.060 0.940 24 H 0.202 0.798 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.920 -21.490 -3.124 22.509 hybrid contribution -1.088 1.368 0.488 1.815 sum 4.833 -20.122 -2.636 20.861 Atomic orbital electron populations 1.69822 1.06630 1.26018 1.59750 1.25550 0.96375 1.01030 1.03819 0.85144 0.77710 0.79492 0.77465 1.21360 1.22162 1.19448 1.19594 0.91330 0.85150 1.40854 0.90847 1.42579 1.05362 1.01057 1.88803 1.20318 0.93970 0.84386 0.94202 0.94042 1.22126 0.99272 0.97084 0.98388 1.21523 0.98598 0.93382 1.00873 1.22164 0.98199 0.99006 0.87578 1.61866 1.45174 1.02130 1.16694 1.22287 0.94452 0.91609 0.98037 1.21777 0.95481 0.93364 0.99557 1.22223 0.97607 0.97208 0.97267 1.22534 0.96859 0.97051 0.99853 1.22353 0.95445 1.01184 0.97065 1.22182 0.98925 0.97763 0.96825 1.22067 0.94425 0.89771 0.99760 0.94047 0.79806 0.93953 0.94147 0.91408 0.90073 0.88586 0.95629 0.95157 0.91545 0.90595 0.92959 0.92231 0.91043 0.91621 0.90763 0.92134 0.90870 0.91975 0.96148 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 3 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.59 9.93 84.03 0.83 -12.75 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -38.85 5.12 -322.68 -1.65 -40.50 16 10 C 0.18 7.56 2.93 45.05 0.13 7.69 16 11 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 12 C -0.13 -4.78 5.59 30.68 0.17 -4.61 16 13 C -0.11 -2.92 6.09 30.65 0.19 -2.74 16 14 C 0.06 1.47 5.30 86.33 0.46 1.93 16 15 N -0.53 -15.26 4.43 -896.35 -3.97 -19.22 16 16 C 0.06 1.52 4.01 86.30 0.35 1.87 16 17 C -0.08 -1.58 2.85 -10.07 -0.03 -1.61 16 18 C -0.11 -2.11 6.14 31.67 0.19 -1.91 16 19 C -0.13 -1.99 6.91 31.89 0.22 -1.77 16 20 C -0.12 -1.82 6.83 31.67 0.22 -1.61 16 21 C -0.12 -1.88 6.46 31.32 0.20 -1.68 16 22 C 0.07 2.47 4.93 86.33 0.43 2.89 16 23 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 24 H 0.37 20.86 7.80 -92.71 -0.72 20.14 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.10 1.98 6.15 -2.39 -0.01 1.97 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 32 H 0.07 1.67 7.90 -2.39 -0.02 1.66 16 33 H 0.08 1.38 6.29 -2.39 -0.02 1.37 16 34 H 0.05 1.22 7.79 -2.39 -0.02 1.21 16 35 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.01 7.67 -2.39 -0.02 0.99 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 2.32 8.01 -2.39 -0.02 2.30 16 Total: -1.00 -63.20 328.61 0.74 -62.46 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.23 Total: 26.82 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.83 Total: -18.27 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -5.34 Total: -120.06 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -63.20 0.74 -62.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258627985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.090 kcal (2) G-P(sol) polarization free energy of solvation -63.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds