Wall clock time and date at job start Mon Mar 30 2020 04:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00160 * 2 1 4 4 H 1.48507 * 109.46776 * 239.99877 * 3 2 1 5 5 H 1.48507 * 109.47145 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47549 * 120.00029 * 3 2 1 7 7 C 1.38815 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00417 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99523 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.50629 * 34.92271 * 10 9 7 12 12 C 1.53121 * 109.53614 * 274.81791 * 10 9 7 13 13 C 1.53122 * 109.16202 * 182.38391 * 12 10 9 14 14 C 1.53042 * 109.27435 * 57.65893 * 13 12 10 15 15 N 1.46849 * 109.52588 * 300.82003 * 14 13 12 16 16 C 1.46896 * 111.00047 * 185.83935 * 15 14 13 17 17 C 1.53002 * 109.47058 * 50.79211 * 16 15 14 18 18 C 1.52996 * 109.46891 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47328 * 299.99597 * 18 17 16 20 20 C 1.52997 * 109.47060 * 60.00126 * 19 18 17 21 21 C 1.52997 * 109.46908 * 170.78864 * 16 15 14 22 22 C 1.46848 * 111.19843 * 61.73925 * 15 14 13 23 23 H 0.97000 * 120.00012 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00356 * 359.97438 * 9 7 2 25 25 H 1.08994 * 109.52622 * 302.29759 * 12 10 9 26 26 H 1.09007 * 109.52183 * 62.48734 * 12 10 9 27 27 H 1.08992 * 109.50382 * 177.59502 * 13 12 10 28 28 H 1.09000 * 109.50721 * 297.67912 * 13 12 10 29 29 H 1.09003 * 109.46114 * 180.80147 * 14 13 12 30 30 H 1.09000 * 109.46269 * 60.83625 * 14 13 12 31 31 H 1.09001 * 109.47271 * 290.79134 * 16 15 14 32 32 H 1.08992 * 109.47056 * 59.99674 * 17 16 15 33 33 H 1.09004 * 109.47006 * 299.99790 * 17 16 15 34 34 H 1.09004 * 109.47368 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.47372 * 59.99964 * 18 17 16 36 36 H 1.09002 * 109.47398 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47194 * 300.00476 * 19 18 17 38 38 H 1.08998 * 109.47533 * 59.99948 * 20 19 18 39 39 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47375 * 300.00206 * 21 16 15 41 41 H 1.09000 * 109.47140 * 60.00224 * 21 16 15 42 42 H 1.09000 * 109.45931 * 58.27532 * 22 15 14 43 43 H 1.08994 * 109.46390 * 178.24479 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9695 -3.5507 0.5887 12 6 2.4190 -4.0396 -1.4374 13 6 3.1315 -5.3950 -1.4329 14 6 2.2235 -6.4408 -0.7817 15 7 1.9075 -6.0292 0.5921 16 6 1.1518 -7.0750 1.2943 17 6 1.8774 -8.4140 1.1478 18 6 1.0901 -9.5033 1.8787 19 6 0.9779 -9.1437 3.3616 20 6 0.2524 -7.8047 3.5082 21 6 1.0403 -6.7150 2.7771 22 6 1.1812 -4.7530 0.6102 23 1 -0.4850 0.8400 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 1.5103 -4.1076 -2.0354 26 1 3.0791 -3.2826 -1.8611 27 1 3.3530 -5.6930 -2.4576 28 1 4.0602 -5.3161 -0.8679 29 1 2.7335 -7.4040 -0.7640 30 1 1.3011 -6.5289 -1.3557 31 1 0.1537 -7.1535 0.8634 32 1 2.8755 -8.3354 1.5787 33 1 1.9569 -8.6705 0.0913 34 1 1.6067 -10.4574 1.7740 35 1 0.0921 -9.5817 1.4473 36 1 0.4173 -9.9200 3.8824 37 1 1.9759 -9.0653 3.7929 38 1 -0.7456 -7.8830 3.0768 39 1 0.1728 -7.5481 4.5645 40 1 2.0384 -6.6364 3.2081 41 1 0.5234 -5.7610 2.8815 42 1 0.2637 -4.8490 0.0297 43 1 0.9342 -4.4903 1.6388 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259489735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:22 Heat of formation + Delta-G solvation = -9.326954 kcal Electronic energy + Delta-G solvation = -19508.411819 eV Core-core repulsion = 16780.393068 eV Total energy + Delta-G solvation = -2728.018751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58393 -37.31481 -34.41418 -32.50726 -31.38457 -30.60656 -28.91391 -27.80560 -24.16911 -23.59742 -22.66143 -21.39729 -20.78494 -19.62698 -19.17068 -17.07010 -16.38563 -14.92827 -14.73736 -14.52083 -14.26965 -14.03117 -13.98487 -13.43577 -13.18347 -13.13538 -12.80248 -12.47889 -12.29412 -12.05505 -11.67210 -11.33908 -11.12987 -10.92405 -10.83694 -10.70658 -10.63575 -10.50023 -10.32386 -10.17688 -10.11465 -9.83270 -9.64652 -9.51545 -8.81692 -7.98431 -6.91139 -5.72245 -3.00655 3.47201 3.51280 3.52374 4.03346 4.62902 4.68096 4.69688 4.91339 5.16500 5.22278 5.28346 5.36744 5.44729 5.47069 5.49225 5.54220 5.57853 5.69269 5.76192 5.77311 5.83777 5.93995 5.98285 6.01938 6.06835 6.08698 6.16017 6.20666 6.22589 6.29480 6.40360 6.47312 6.50746 6.58954 6.69665 7.03115 7.16112 7.45666 7.49156 7.75429 8.46776 9.57272 10.15617 10.50342 11.50664 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032138 B = 0.004793 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.037875 B = 5840.038440 C = 6422.619887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.054 0.946 12 C -0.137 4.137 13 C -0.114 4.114 14 C 0.054 3.946 15 N -0.532 5.532 16 C 0.088 3.912 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.113 4.113 22 C 0.052 3.948 23 H 0.255 0.745 24 H 0.382 0.618 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 -19.137 3.050 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.073 3.927 11 H 0.072 0.928 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.073 4.073 15 N -0.256 5.256 16 C -0.021 4.021 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.076 4.076 23 H 0.065 0.935 24 H 0.215 0.785 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.963 -18.895 3.308 19.410 hybrid contribution -0.699 0.886 -0.563 1.261 sum 2.264 -18.009 2.745 18.357 Atomic orbital electron populations 1.69653 1.05112 1.25669 1.57964 1.24726 0.95490 0.97619 1.03187 0.86276 0.78510 0.83620 0.77847 1.21328 1.21755 1.21266 1.19200 0.90971 0.84024 1.42365 0.91205 1.42377 1.05730 0.99822 1.88633 1.20158 0.94529 0.85267 0.92775 0.92753 1.22303 0.99685 0.95073 1.00656 1.21578 0.98983 0.95680 0.99061 1.22150 0.98231 0.98469 0.88480 1.61921 1.45610 1.02723 1.15388 1.21570 0.94866 0.91025 0.94590 1.21700 0.99757 0.93653 1.00220 1.21523 1.00327 0.98077 0.95627 1.21540 1.00743 0.97062 0.96307 1.21537 0.99018 0.94844 1.00223 1.21611 1.01090 0.98284 0.94086 1.22419 0.95111 0.88864 1.01181 0.93545 0.78489 0.93170 0.92094 0.92559 0.91602 0.90981 0.95566 0.94703 0.91093 0.91891 0.92113 0.92274 0.92409 0.91934 0.92263 0.91941 0.91113 0.91530 0.95502 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.60 13.06 55.49 0.72 -27.88 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -6.62 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -18.64 5.13 -53.34 -0.27 -18.91 16 10 C 0.18 3.82 2.93 -67.85 -0.20 3.62 16 11 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 12 C -0.14 -2.58 5.59 -26.61 -0.15 -2.73 16 13 C -0.11 -1.72 6.09 -26.65 -0.16 -1.88 16 14 C 0.05 0.76 5.00 -3.83 -0.02 0.75 16 15 N -0.53 -8.05 4.52 -226.69 -1.03 -9.07 16 16 C 0.09 1.13 1.96 -67.72 -0.13 1.00 16 17 C -0.12 -1.24 4.66 -26.73 -0.12 -1.36 16 18 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 19 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 20 C -0.12 -1.20 5.93 -26.70 -0.16 -1.36 16 21 C -0.11 -1.40 5.12 -26.70 -0.14 -1.54 16 22 C 0.05 0.94 4.76 -3.83 -0.02 0.93 16 23 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.87 5.83 -51.93 -0.30 0.57 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.65 6.19 -51.93 -0.32 0.33 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.92 6.40 -51.93 -0.33 0.58 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.42 6.18 -51.93 -0.32 1.10 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -29.49 321.63 -10.31 -39.80 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.90 Total: 5.86 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.66 Total: -12.31 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.57 Total: -55.86 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.49 -10.31 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259489735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.478 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds