Wall clock time and date at job start Mon Mar 30 2020 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47343 * 300.00119 * 3 2 1 6 6 H 1.48508 * 109.46782 * 60.00057 * 3 2 1 7 7 C 1.37877 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00260 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.78157 * 307.85138 * 9 7 2 11 11 C 1.50824 * 109.74362 * 68.55304 * 9 7 2 12 12 C 1.53817 * 111.62177 * 214.69711 * 11 9 7 13 13 C 1.54175 * 111.96993 * 319.04181 * 12 11 9 14 14 C 1.50747 * 112.60787 * 318.48929 * 13 12 11 15 15 C 1.54430 * 109.02796 * 93.01837 * 14 13 12 16 16 N 1.39776 * 111.76735 * 282.58753 * 15 14 13 17 17 C 1.46906 * 110.99963 * 189.12542 * 16 15 14 18 18 C 1.52999 * 109.46996 * 78.67876 * 17 16 15 19 19 H 1.08994 * 110.63057 * 54.18556 * 18 17 16 20 20 C 1.55145 * 110.85479 * 177.39117 * 18 17 16 21 21 C 1.54902 * 101.65331 * 154.10663 * 20 18 17 22 22 N 1.47847 * 104.79600 * 322.92981 * 21 20 18 23 23 C 1.47447 * 108.56669 * 24.09672 * 22 21 20 24 24 H 0.96995 * 120.00121 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.04966 * 94.14216 * 11 9 7 26 26 H 1.09005 * 108.98922 * 335.20386 * 11 9 7 27 27 H 1.08996 * 108.98586 * 198.39721 * 12 11 9 28 28 H 1.09009 * 108.98288 * 79.67892 * 12 11 9 29 29 H 1.08998 * 108.85244 * 197.68179 * 13 12 11 30 30 H 1.08999 * 108.77373 * 79.24236 * 13 12 11 31 31 H 1.09000 * 109.54704 * 333.15290 * 14 13 12 32 32 H 1.09001 * 109.62160 * 212.92980 * 14 13 12 33 33 H 1.09005 * 109.02225 * 161.99902 * 15 14 13 34 34 H 1.08998 * 109.02223 * 43.17903 * 15 14 13 35 35 H 1.09001 * 109.47281 * 318.68080 * 17 16 15 36 36 H 1.08995 * 109.47327 * 198.68129 * 17 16 15 37 37 H 1.09002 * 110.99134 * 272.19796 * 20 18 17 38 38 H 1.09002 * 110.98643 * 36.01823 * 20 18 17 39 39 H 1.08992 * 110.37634 * 204.10075 * 21 20 18 40 40 H 1.09005 * 110.46844 * 81.80163 * 21 20 18 41 41 H 1.00896 * 110.99883 * 261.82503 * 22 21 20 42 42 H 1.08996 * 109.88756 * 239.60378 * 23 22 21 43 43 H 1.09002 * 110.02288 * 118.49155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5219 -2.5042 0.8096 11 6 0.5463 -2.6806 -1.3216 12 6 -0.8019 -3.4011 -1.1505 13 6 -0.7127 -4.5584 -0.1357 14 6 0.5535 -5.3628 -0.2839 15 6 1.6256 -4.7947 0.6716 16 7 2.1957 -3.6206 0.1717 17 6 3.3546 -3.2135 0.9775 18 6 4.5672 -4.0634 0.5927 19 1 4.7456 -4.0138 -0.4815 20 6 5.8274 -3.6158 1.3791 21 6 6.6686 -4.9165 1.3888 22 7 5.6793 -6.0047 1.5401 23 6 4.3750 -5.5255 1.0470 24 1 -0.4850 0.8400 -0.0004 25 1 1.1812 -3.2668 -1.9859 26 1 0.3723 -1.7016 -1.7682 27 1 -1.1163 -3.7990 -2.1153 28 1 -1.5462 -2.6834 -0.8051 29 1 -1.5682 -5.2186 -0.2784 30 1 -0.7516 -4.1450 0.8721 31 1 0.9095 -5.2965 -1.3120 32 1 0.3566 -6.4050 -0.0327 33 1 2.4094 -5.5396 0.8093 34 1 1.1651 -4.5832 1.6366 35 1 3.1308 -3.3575 2.0346 36 1 3.5744 -2.1620 0.7927 37 1 6.3510 -2.8160 0.8553 38 1 5.5673 -3.3115 2.3930 39 1 7.3616 -4.9140 2.2299 40 1 7.2123 -5.0258 0.4503 41 1 5.6148 -6.3035 2.5017 42 1 3.6365 -5.5712 1.8473 43 1 4.0474 -6.1354 0.2050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259634215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:44 Heat of formation + Delta-G solvation = 15.241660 kcal Electronic energy + Delta-G solvation = -20241.241719 eV Core-core repulsion = 17514.288343 eV Total energy + Delta-G solvation = -2726.953376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.30014 -37.62383 -33.87897 -33.21426 -30.59569 -30.26637 -28.75692 -26.09914 -25.90895 -22.92554 -22.82577 -21.23470 -19.68907 -19.59430 -18.44967 -16.49402 -16.20755 -15.41423 -15.24026 -14.51769 -13.96170 -13.76977 -13.68927 -13.34012 -13.03117 -12.69388 -12.34503 -12.10663 -11.76534 -11.35055 -11.32792 -11.20480 -11.02430 -10.86255 -10.74112 -10.69413 -10.46122 -10.21014 -9.97857 -9.75776 -9.43740 -9.33760 -9.19423 -8.64392 -8.40185 -8.23738 -7.00076 -6.06539 -4.10898 3.25556 3.34311 3.36626 4.36954 4.40669 4.84395 5.04365 5.12652 5.26744 5.35769 5.52539 5.60311 5.67961 5.70274 5.73374 5.90551 6.03394 6.06967 6.13020 6.21017 6.23602 6.29905 6.36575 6.40464 6.48069 6.63949 6.70571 6.79770 6.84316 6.87383 6.95293 7.00307 7.01722 7.29099 7.47385 7.49983 7.62324 7.82195 7.89074 8.20142 8.36624 8.84456 9.01299 9.54639 11.01534 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.008790 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.752342 B = 3184.817786 C = 4672.213292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.074 0.926 9 C 0.228 3.772 10 H 0.013 0.987 11 C -0.088 4.088 12 C -0.112 4.112 13 C -0.115 4.115 14 C -0.113 4.113 15 C 0.065 3.935 16 N -0.553 5.553 17 C 0.055 3.945 18 C -0.099 4.099 19 H 0.083 0.917 20 C -0.150 4.150 21 C 0.048 3.952 22 N -0.692 5.692 23 C 0.049 3.951 24 H 0.260 0.740 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.001 0.999 35 H 0.014 0.986 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.332 0.668 42 H 0.054 0.946 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -8.433 2.228 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.091 0.909 9 C 0.123 3.877 10 H 0.030 0.970 11 C -0.127 4.127 12 C -0.149 4.149 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.065 4.065 16 N -0.277 5.277 17 C -0.072 4.072 18 C -0.119 4.119 19 H 0.101 0.899 20 C -0.190 4.190 21 C -0.081 4.081 22 N -0.320 5.320 23 C -0.079 4.079 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.032 0.968 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.146 0.854 42 H 0.072 0.928 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.160 -8.787 1.192 10.797 hybrid contribution -0.361 1.720 1.511 2.318 sum 5.799 -7.068 2.704 9.534 Atomic orbital electron populations 1.69994 1.05827 1.26440 1.49922 1.24947 0.94820 0.99002 0.95163 0.86578 0.80160 0.83952 0.77567 1.19711 1.20982 1.21176 1.21495 0.93220 0.90161 1.51238 0.90868 1.18882 0.89276 0.86014 0.93479 0.96975 1.21330 0.92799 0.99083 0.99476 1.21895 1.00244 0.96241 0.96555 1.21365 0.96527 0.96975 1.00388 1.21426 0.95505 0.97211 1.00956 1.21292 0.96623 0.93988 0.94645 1.58831 1.11218 1.05791 1.51831 1.22413 0.89233 1.02337 0.93237 1.22482 0.94822 0.93994 1.00627 0.89865 1.23152 0.96906 0.98179 1.00722 1.22835 0.94715 0.89159 1.01439 1.61805 1.07649 1.37169 1.25337 1.22989 0.89579 0.95675 0.99643 0.93051 0.94246 0.91295 0.94657 0.92574 0.94077 0.92810 0.91171 0.93123 0.91186 0.98128 0.96753 0.86581 0.90822 0.91686 0.92146 0.90832 0.85354 0.92807 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.62 12.35 55.43 0.68 -23.93 16 2 C 0.06 1.69 5.07 -17.82 -0.09 1.60 16 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.52 -13.64 7.45 -34.44 -0.26 -13.90 16 8 H 0.07 1.88 5.22 -52.49 -0.27 1.61 16 9 C 0.23 5.54 1.71 -69.55 -0.12 5.42 16 10 H 0.01 0.34 6.64 -51.93 -0.35 0.00 16 11 C -0.09 -2.06 4.68 -27.40 -0.13 -2.19 16 12 C -0.11 -2.30 5.91 -25.69 -0.15 -2.46 16 13 C -0.11 -2.13 5.32 -27.25 -0.14 -2.27 16 14 C -0.11 -1.96 5.65 -27.11 -0.15 -2.11 16 15 C 0.06 1.19 4.46 -6.75 -0.03 1.16 16 16 N -0.55 -11.46 3.83 -233.38 -0.89 -12.35 16 17 C 0.06 1.07 4.39 -3.82 -0.02 1.05 16 18 C -0.10 -1.59 3.17 -88.80 -0.28 -1.87 16 19 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 20 C -0.15 -2.05 6.53 -24.59 -0.16 -2.21 16 21 C 0.05 0.58 7.57 -2.30 -0.02 0.56 16 22 N -0.69 -9.04 7.39 -110.79 -0.82 -9.86 16 23 C 0.05 0.72 5.30 -2.84 -0.02 0.71 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.04 0.90 7.26 -51.93 -0.38 0.52 16 26 H 0.07 1.80 6.70 -51.93 -0.35 1.45 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 1.08 6.57 -51.93 -0.34 0.74 16 31 H 0.07 1.27 7.11 -51.93 -0.37 0.90 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.16 3.46 -51.93 -0.18 0.98 16 34 H 0.00 0.02 7.54 -51.93 -0.39 -0.37 16 35 H 0.01 0.28 7.79 -51.93 -0.40 -0.12 16 36 H 0.12 2.51 4.27 -51.93 -0.22 2.29 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.33 3.78 8.91 -39.29 -0.35 3.43 16 42 H 0.05 0.79 6.25 -51.93 -0.32 0.47 16 43 H 0.07 1.15 7.59 -51.93 -0.39 0.76 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -26.85 308.45 -10.22 -37.07 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.26 Total: 5.29 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.57 Total: -16.51 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -1.03 Total: -46.15 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.85 -10.22 -37.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.310 kcal (2) G-P(sol) polarization free energy of solvation -26.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds