Wall clock time and date at job start Mon Mar 30 2020 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47192 * 2 1 4 4 N 1.46498 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.37863 * 127.04612 * 90.02787 * 4 3 2 6 6 C 1.40125 * 126.65028 * 359.97438 * 5 4 3 7 7 H 1.07995 * 120.00660 * 5.89707 * 6 5 4 8 8 C 1.40246 * 119.99782 * 185.89950 * 6 5 4 9 9 N 1.30689 * 119.99702 * 6.41447 * 8 6 5 10 10 Si 1.86800 * 120.00093 * 186.41873 * 8 6 5 11 11 H 1.48498 * 109.47272 * 265.01091 * 10 8 6 12 12 H 1.48494 * 109.47141 * 25.01225 * 10 8 6 13 13 H 1.48502 * 109.47171 * 145.01229 * 10 8 6 14 14 N 1.33021 * 106.68913 * 179.72230 * 5 4 3 15 15 N 1.28565 * 109.35296 * 0.25394 * 14 5 4 16 16 C 1.31308 * 110.21111 * 0.02562 * 15 14 5 17 17 C 1.50700 * 126.08247 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46906 * 89.97020 * 17 16 15 19 19 N 1.46902 * 109.46922 * 180.02562 * 18 17 16 20 20 C 1.46897 * 111.00056 * 66.04526 * 19 18 17 21 21 C 1.46901 * 111.00109 * 190.00347 * 19 18 17 22 22 H 1.08996 * 109.47454 * 300.00021 * 1 2 3 23 23 H 1.09001 * 109.47059 * 59.99921 * 1 2 3 24 24 H 1.08996 * 109.47307 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47454 * 239.99979 * 2 1 3 26 26 H 1.08997 * 109.47205 * 119.99591 * 2 1 3 27 27 H 1.08996 * 109.46938 * 59.99663 * 3 2 1 28 28 H 1.08997 * 109.46712 * 299.99893 * 3 2 1 29 29 H 0.97004 * 120.00009 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.47299 * 209.97108 * 17 16 15 31 31 H 1.08999 * 109.46930 * 329.97103 * 17 16 15 32 32 H 1.08998 * 109.47214 * 300.00140 * 18 17 16 33 33 H 1.08999 * 109.47258 * 60.00284 * 18 17 16 34 34 H 1.08999 * 109.47351 * 60.00112 * 20 19 18 35 35 H 1.09004 * 109.47071 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47018 * 299.99954 * 20 19 18 37 37 H 1.08998 * 109.47273 * 59.99369 * 21 19 18 38 38 H 1.08996 * 109.47392 * 180.02562 * 21 19 18 39 39 H 1.09003 * 109.46852 * 299.99923 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3360 1.4429 -1.0994 6 6 3.9432 1.4429 -2.4445 7 1 2.8988 1.5386 -2.7021 8 6 4.9064 1.3184 -3.4562 9 7 6.1527 1.0771 -3.1457 10 14 4.4079 1.4977 -5.2475 11 1 4.1426 0.1553 -5.8243 12 1 3.1797 2.3273 -5.3389 13 1 5.5053 2.1532 -6.0035 14 7 5.5829 1.4489 -0.6361 15 7 5.5599 1.4468 0.6493 16 6 4.3197 1.4389 1.0808 17 6 3.8817 1.4346 2.5227 18 6 3.7255 2.8756 3.0125 19 7 3.2991 2.8715 4.4183 20 6 4.3487 2.3195 5.2851 21 6 2.9107 4.2193 4.8546 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 6.8191 0.9914 -3.8455 30 1 2.9274 0.9154 2.6110 31 1 4.6305 0.9241 3.1284 32 1 4.6798 3.3948 2.9242 33 1 2.9767 3.3861 2.4068 34 1 5.2502 2.9255 5.1952 35 1 4.0071 2.3285 6.3202 36 1 4.5678 1.2953 4.9834 37 1 2.0845 4.5763 4.2397 38 1 2.5998 4.1878 5.8988 39 1 3.7601 4.8942 4.7490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259704263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:24 Heat of formation + Delta-G solvation = 57.481922 kcal Electronic energy + Delta-G solvation = -18991.897641 eV Core-core repulsion = 16163.235596 eV Total energy + Delta-G solvation = -2828.662044 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78133 -37.43548 -35.11580 -33.63847 -31.92673 -31.28022 -28.42831 -27.51569 -26.06239 -25.40259 -23.84729 -21.55860 -20.96869 -20.40928 -18.96521 -17.04136 -15.73236 -15.44340 -15.27358 -14.85063 -14.60127 -14.50152 -14.09605 -13.41427 -13.13229 -12.77051 -12.62564 -12.30158 -11.97697 -11.82214 -11.70035 -11.55490 -11.42787 -11.24980 -11.15559 -10.99653 -10.80250 -10.57041 -10.45140 -10.20722 -9.48919 -9.34434 -8.49839 -8.29104 -8.21121 -7.48525 -6.55846 -4.47761 2.98404 3.11007 3.14584 3.50551 3.88393 4.05001 4.21812 4.57470 5.16719 5.21341 5.23332 5.27761 5.41400 5.47599 5.49849 5.53486 5.63430 5.66132 5.77621 5.79403 5.84247 5.92407 5.93567 6.05189 6.10243 6.16046 6.22577 6.39904 6.43566 6.62232 7.03619 7.08441 7.11018 7.21101 7.38925 7.76048 8.26895 8.32017 8.84066 9.03518 10.38763 10.88068 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.005968 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.680417 B = 4690.896592 C = 5422.826668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.130 3.870 4 N -0.519 5.519 5 C 0.339 3.661 6 C -0.455 4.455 7 H 0.080 0.920 8 C 0.082 3.918 9 N -0.742 5.742 10 Si 0.914 3.086 11 H -0.271 1.271 12 H -0.263 1.263 13 H -0.275 1.275 14 N -0.345 5.345 15 N -0.301 5.301 16 C 0.065 3.935 17 C -0.003 4.003 18 C 0.062 3.938 19 N -0.549 5.549 20 C 0.021 3.979 21 C 0.025 3.975 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.277 0.723 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 1.800 8.647 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.005 3.995 4 N -0.219 5.219 5 C 0.094 3.906 6 C -0.495 4.495 7 H 0.098 0.902 8 C -0.143 4.143 9 N -0.367 5.367 10 Si 0.738 3.262 11 H -0.196 1.196 12 H -0.187 1.187 13 H -0.200 1.200 14 N -0.190 5.190 15 N -0.143 5.143 16 C -0.200 4.200 17 C -0.043 4.043 18 C -0.067 4.067 19 N -0.273 5.273 20 C -0.127 4.127 21 C -0.123 4.123 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.292 1.483 8.685 12.099 hybrid contribution -0.977 0.599 -0.986 1.512 sum -9.269 2.082 7.700 12.228 Atomic orbital electron populations 1.21683 0.95519 1.01542 1.01617 1.21881 0.95418 0.97379 1.03047 1.21328 0.78960 0.96889 1.02313 1.45969 1.05845 1.63374 1.06706 1.21568 0.85160 0.95257 0.88584 1.18105 0.94896 1.49897 0.86578 0.90153 1.25744 0.94335 0.93266 1.00931 1.69944 1.01658 1.30299 1.34755 0.86215 0.79296 0.79096 0.81544 1.19613 1.18694 1.20038 1.75570 1.15522 1.29672 0.98231 1.74002 1.16802 1.15876 1.07584 1.23444 0.88805 1.17645 0.90092 1.19476 1.00926 0.95683 0.88234 1.22165 0.99374 0.97782 0.87347 1.62028 1.39925 1.22207 1.03173 1.22434 0.92738 1.00705 0.96858 1.22351 0.99922 0.89112 1.00924 0.92861 0.92631 0.92745 0.90982 0.92021 0.91185 0.90232 0.91194 0.91294 0.90476 0.94180 0.91300 0.95547 0.91839 0.90814 0.91552 0.91649 0.95796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.14 -2.22 6.26 -26.73 -0.17 -2.38 16 3 C 0.13 2.34 5.66 -4.04 -0.02 2.32 16 4 N -0.52 -12.16 2.80 -112.86 -0.32 -12.47 16 5 C 0.34 9.46 7.50 -155.21 -1.16 8.30 16 6 C -0.45 -12.18 9.07 -38.12 -0.35 -12.52 16 7 H 0.08 1.97 7.26 -52.49 -0.38 1.59 16 8 C 0.08 2.14 5.49 -17.28 -0.09 2.04 16 9 N -0.74 -20.85 12.01 55.56 0.67 -20.18 16 10 Si 0.91 18.91 29.57 -169.99 -5.03 13.88 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 12 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 13 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 14 N -0.34 -10.51 10.61 31.22 0.33 -10.18 16 15 N -0.30 -8.41 12.21 32.88 0.40 -8.01 16 16 C 0.07 1.53 7.28 -154.50 -1.12 0.40 16 17 C 0.00 -0.05 5.30 -27.88 -0.15 -0.20 16 18 C 0.06 1.00 4.94 -3.82 -0.02 0.98 16 19 N -0.55 -7.43 5.02 -251.26 -1.26 -8.69 16 20 C 0.02 0.25 9.32 60.06 0.56 0.81 16 21 C 0.03 0.29 9.57 60.07 0.57 0.86 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.10 7.80 -51.93 -0.40 0.70 16 28 H 0.08 1.41 7.47 -51.93 -0.39 1.02 16 29 H 0.28 7.04 8.29 -40.82 -0.34 6.70 16 30 H 0.07 1.14 7.84 -51.93 -0.41 0.73 16 31 H 0.08 1.35 6.55 -51.93 -0.34 1.01 16 32 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 33 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.07 0.90 6.47 -51.93 -0.34 0.57 16 37 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 38 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 323.07 15.07 4.87 4.87 Total: -1.00 -32.59 323.07 -8.37 -40.96 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.46 Total: 0.62 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.58 Total: -0.80 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.18 Total: -59.53 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.59 -8.37 -40.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259704263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.447 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds