Wall clock time and date at job start Mon Mar 30 2020 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47192 * 2 1 4 4 N 1.46498 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.37863 * 127.04612 * 90.02787 * 4 3 2 6 6 C 1.40125 * 126.65028 * 359.97438 * 5 4 3 7 7 H 1.07995 * 120.00660 * 5.89707 * 6 5 4 8 8 C 1.40246 * 119.99782 * 185.89950 * 6 5 4 9 9 N 1.30689 * 119.99702 * 6.41447 * 8 6 5 10 10 Si 1.86800 * 120.00093 * 186.41873 * 8 6 5 11 11 H 1.48498 * 109.47272 * 265.01091 * 10 8 6 12 12 H 1.48494 * 109.47141 * 25.01225 * 10 8 6 13 13 H 1.48502 * 109.47171 * 145.01229 * 10 8 6 14 14 N 1.33021 * 106.68913 * 179.72230 * 5 4 3 15 15 N 1.28565 * 109.35296 * 0.25394 * 14 5 4 16 16 C 1.31308 * 110.21111 * 0.02562 * 15 14 5 17 17 C 1.50700 * 126.08247 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46906 * 89.97020 * 17 16 15 19 19 N 1.46902 * 109.46922 * 180.02562 * 18 17 16 20 20 C 1.46897 * 111.00056 * 66.04526 * 19 18 17 21 21 C 1.46901 * 111.00109 * 190.00347 * 19 18 17 22 22 H 1.08996 * 109.47454 * 300.00021 * 1 2 3 23 23 H 1.09001 * 109.47059 * 59.99921 * 1 2 3 24 24 H 1.08996 * 109.47307 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47454 * 239.99979 * 2 1 3 26 26 H 1.08997 * 109.47205 * 119.99591 * 2 1 3 27 27 H 1.08996 * 109.46938 * 59.99663 * 3 2 1 28 28 H 1.08997 * 109.46712 * 299.99893 * 3 2 1 29 29 H 0.97004 * 120.00009 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.47299 * 209.97108 * 17 16 15 31 31 H 1.08999 * 109.46930 * 329.97103 * 17 16 15 32 32 H 1.08998 * 109.47214 * 300.00140 * 18 17 16 33 33 H 1.08999 * 109.47258 * 60.00284 * 18 17 16 34 34 H 1.08999 * 109.47351 * 60.00112 * 20 19 18 35 35 H 1.09004 * 109.47071 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47018 * 299.99954 * 20 19 18 37 37 H 1.08998 * 109.47273 * 59.99369 * 21 19 18 38 38 H 1.08996 * 109.47392 * 180.02562 * 21 19 18 39 39 H 1.09003 * 109.46852 * 299.99923 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3360 1.4429 -1.0994 6 6 3.9432 1.4429 -2.4445 7 1 2.8988 1.5386 -2.7021 8 6 4.9064 1.3184 -3.4562 9 7 6.1527 1.0771 -3.1457 10 14 4.4079 1.4977 -5.2475 11 1 4.1426 0.1553 -5.8243 12 1 3.1797 2.3273 -5.3389 13 1 5.5053 2.1532 -6.0035 14 7 5.5829 1.4489 -0.6361 15 7 5.5599 1.4468 0.6493 16 6 4.3197 1.4389 1.0808 17 6 3.8817 1.4346 2.5227 18 6 3.7255 2.8756 3.0125 19 7 3.2991 2.8715 4.4183 20 6 4.3487 2.3195 5.2851 21 6 2.9107 4.2193 4.8546 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 6.8191 0.9914 -3.8455 30 1 2.9274 0.9154 2.6110 31 1 4.6305 0.9241 3.1284 32 1 4.6798 3.3948 2.9242 33 1 2.9767 3.3861 2.4068 34 1 5.2502 2.9255 5.1952 35 1 4.0071 2.3285 6.3202 36 1 4.5678 1.2953 4.9834 37 1 2.0845 4.5763 4.2397 38 1 2.5998 4.1878 5.8988 39 1 3.7601 4.8942 4.7490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259704263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:24 Heat of formation + Delta-G solvation = 36.209019 kcal Electronic energy + Delta-G solvation = -18992.820103 eV Core-core repulsion = 16163.235596 eV Total energy + Delta-G solvation = -2829.584507 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.72782 -38.58167 -36.64677 -35.57803 -33.45666 -32.89027 -30.23691 -28.46729 -27.65247 -27.02795 -25.32164 -22.92917 -22.51939 -22.00630 -20.71513 -18.94709 -17.48758 -16.84987 -16.58322 -16.27613 -16.04978 -15.87441 -15.50065 -15.03581 -14.47014 -14.15793 -14.11267 -13.39953 -13.30201 -13.20232 -12.97314 -12.91342 -12.77126 -12.62607 -12.53685 -12.42873 -12.25673 -12.00292 -11.89059 -11.64696 -11.49934 -11.22645 -10.35171 -10.22442 -9.54086 -9.37485 -8.49407 -6.53748 1.30168 1.41373 1.57918 1.72551 2.17242 2.40894 2.55495 3.01609 3.41896 3.87869 3.88053 4.02690 4.12274 4.17034 4.32088 4.36114 4.46948 4.50606 4.58749 4.59395 4.68739 4.74732 4.82081 4.92640 4.98712 5.00624 5.04090 5.10519 5.15116 5.20485 5.32368 5.42704 5.46809 5.84282 5.96816 6.07991 6.30651 6.40348 6.85296 7.11587 8.48633 8.86201 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.005968 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.680417 B = 4690.896592 C = 5422.826668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.122 3.878 4 N -0.519 5.519 5 C 0.311 3.689 6 C -0.479 4.479 7 H 0.097 0.903 8 C 0.031 3.969 9 N -0.796 5.796 10 Si 1.000 3.000 11 H -0.261 1.261 12 H -0.249 1.249 13 H -0.273 1.273 14 N -0.401 5.401 15 N -0.358 5.358 16 C 0.095 3.905 17 C 0.003 3.997 18 C 0.075 3.925 19 N -0.549 5.549 20 C 0.018 3.982 21 C 0.023 3.977 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.281 0.719 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.015 0.985 33 H 0.069 0.931 34 H 0.019 0.981 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 2.116 9.387 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C -0.001 4.001 4 N -0.217 5.217 5 C 0.064 3.936 6 C -0.519 4.519 7 H 0.115 0.885 8 C -0.188 4.188 9 N -0.421 5.421 10 Si 0.819 3.181 11 H -0.185 1.185 12 H -0.172 1.172 13 H -0.198 1.198 14 N -0.246 5.246 15 N -0.198 5.198 16 C -0.173 4.173 17 C -0.038 4.038 18 C -0.054 4.054 19 N -0.273 5.273 20 C -0.130 4.130 21 C -0.125 4.125 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.353 1.800 9.460 14.887 hybrid contribution -0.091 0.500 -1.010 1.131 sum -11.444 2.300 8.450 14.410 Atomic orbital electron populations 1.21630 0.91962 1.02881 1.02924 1.21801 0.98331 0.95371 1.01426 1.21752 0.75752 0.98736 1.03865 1.46275 1.07882 1.62117 1.05467 1.21930 0.85516 0.96054 0.90117 1.18571 0.95989 1.50595 0.86730 0.88532 1.26914 0.93862 0.91887 1.06178 1.70098 1.03339 1.31966 1.36740 0.84944 0.79212 0.79534 0.74389 1.18547 1.17170 1.19770 1.75424 1.17775 1.31851 0.99513 1.73888 1.19412 1.19385 1.07127 1.24433 0.87940 1.12674 0.92262 1.19642 1.01949 0.97545 0.84625 1.21886 0.98261 0.95737 0.89501 1.62042 1.39906 1.23740 1.01595 1.22517 0.92320 1.00163 0.97991 1.22456 0.99943 0.87647 1.02423 0.90871 0.91997 0.91449 0.93926 0.92383 0.88221 0.89995 0.90830 0.88965 0.90046 0.96650 0.91216 0.96232 0.89233 0.91248 0.90922 0.89301 0.96185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.91 71.98 0.71 -2.14 16 2 C -0.13 -3.97 6.26 30.60 0.19 -3.77 16 3 C 0.12 4.18 5.66 86.38 0.49 4.67 16 4 N -0.52 -24.46 2.80 -510.97 -1.43 -25.89 16 5 C 0.31 17.96 7.50 133.50 1.00 18.96 16 6 C -0.48 -26.20 9.07 23.22 0.21 -25.99 16 7 H 0.10 4.74 7.26 -2.91 -0.02 4.72 16 8 C 0.03 1.67 5.49 85.35 0.47 2.14 16 9 N -0.80 -46.62 12.01 21.88 0.26 -46.35 16 10 Si 1.00 39.01 29.57 68.60 2.03 41.04 16 11 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 12 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 13 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 14 N -0.40 -25.72 10.61 -55.14 -0.58 -26.31 16 15 N -0.36 -20.87 12.21 -49.88 -0.61 -21.48 16 16 C 0.10 4.50 7.28 137.81 1.00 5.50 16 17 C 0.00 0.09 5.30 29.85 0.16 0.24 16 18 C 0.08 2.33 4.94 86.30 0.43 2.75 16 19 N -0.55 -13.42 5.02 -948.85 -4.76 -18.18 16 20 C 0.02 0.40 9.32 127.69 1.19 1.59 16 21 C 0.02 0.45 9.57 127.69 1.22 1.68 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.10 2.83 7.80 -2.39 -0.02 2.81 16 28 H 0.08 2.78 7.47 -2.39 -0.02 2.77 16 29 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 30 H 0.09 2.79 7.84 -2.39 -0.02 2.77 16 31 H 0.08 2.78 6.55 -2.39 -0.02 2.76 16 32 H 0.02 0.55 8.12 -2.39 -0.02 0.53 16 33 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 34 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.09 1.51 8.12 -2.38 -0.02 1.49 16 36 H 0.07 1.57 6.47 -2.39 -0.02 1.56 16 37 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 38 H 0.09 1.35 8.12 -2.39 -0.02 1.33 16 39 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -75.37 323.07 2.99 -72.39 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.01 Total: 19.17 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 7.08 Total: 5.61 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -7.13 Total: -138.21 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -75.37 2.99 -72.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259704263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.594 kcal (2) G-P(sol) polarization free energy of solvation -75.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds