Wall clock time and date at job start Mon Mar 30 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46894 * 109.47258 * 2 1 4 4 C 1.46901 * 111.00071 * 170.00401 * 3 2 1 5 5 C 1.52999 * 109.47204 * 194.62867 * 4 3 2 6 6 C 1.46901 * 111.00302 * 293.95392 * 3 2 1 7 7 H 1.09001 * 109.47654 * 211.30093 * 6 3 2 8 8 C 1.53001 * 109.47204 * 331.30831 * 6 3 2 9 9 C 1.50704 * 109.46584 * 292.16374 * 8 6 3 10 10 H 1.08004 * 120.00240 * 355.60494 * 9 8 6 11 11 C 1.37879 * 120.00145 * 175.33570 * 9 8 6 12 12 N 1.31517 * 119.99471 * 0.26883 * 11 9 8 13 13 Si 1.86795 * 120.00368 * 180.27319 * 11 9 8 14 14 H 1.48500 * 109.47208 * 89.99707 * 13 11 9 15 15 H 1.48494 * 109.47139 * 209.99646 * 13 11 9 16 16 H 1.48500 * 109.46972 * 329.99508 * 13 11 9 17 17 C 1.50703 * 109.46883 * 91.30105 * 6 3 2 18 18 N 1.30516 * 126.35056 * 336.08789 * 17 6 3 19 19 N 1.28597 * 109.67803 * 179.97438 * 18 17 6 20 20 C 1.30518 * 109.67084 * 0.02562 * 19 18 17 21 21 C 1.50695 * 126.34724 * 180.02562 * 20 19 18 22 22 N 1.35496 * 107.30708 * 359.76692 * 20 19 18 23 23 H 0.96996 * 126.98038 * 180.22063 * 22 20 19 24 24 H 1.09006 * 109.46795 * 300.00076 * 1 2 3 25 25 H 1.08995 * 109.47251 * 59.99559 * 1 2 3 26 26 H 1.08994 * 109.47083 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46795 * 239.99923 * 2 1 3 28 28 H 1.08995 * 109.47251 * 120.00441 * 2 1 3 29 29 H 1.09000 * 109.46719 * 314.61832 * 4 3 2 30 30 H 1.08994 * 109.47586 * 74.62471 * 4 3 2 31 31 H 1.09002 * 109.47277 * 184.92929 * 5 4 3 32 32 H 1.09009 * 109.47176 * 304.92909 * 5 4 3 33 33 H 1.08999 * 109.47852 * 64.92502 * 5 4 3 34 34 H 1.08992 * 109.47429 * 172.16484 * 8 6 3 35 35 H 1.08994 * 109.47033 * 52.15553 * 8 6 3 36 36 H 0.97004 * 119.99618 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.47335 * 89.97251 * 21 20 19 38 38 H 1.08999 * 109.47215 * 209.97211 * 21 20 19 39 39 H 1.08999 * 109.46884 * 329.97158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4685 1.4310 0.2381 5 6 3.8819 2.8608 0.5927 6 6 1.6702 2.0669 -1.2533 7 1 2.4375 2.8033 -1.4925 8 6 1.5782 1.0404 -2.3841 9 6 2.9497 0.4860 -2.6720 10 1 3.8116 0.8818 -2.1552 11 6 3.1036 -0.5302 -3.5910 12 7 2.0541 -1.0121 -4.2203 13 14 4.8026 -1.2225 -3.9423 14 1 5.0775 -2.3522 -3.0185 15 1 4.8599 -1.7054 -5.3454 16 1 5.8210 -0.1604 -3.7424 17 6 0.3413 2.7597 -1.0945 18 7 -0.5973 2.4470 -0.2433 19 7 -1.5934 3.2482 -0.3833 20 6 -1.3356 4.1082 -1.3307 21 6 -2.2432 5.2142 -1.8040 22 7 -0.0985 3.8258 -1.8058 23 1 0.3752 4.2911 -2.5128 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7227 0.7645 1.0622 30 1 3.9950 1.1133 -0.6619 31 1 4.9668 2.9135 0.6834 32 1 3.5495 3.5404 -0.1922 33 1 3.4238 3.1474 1.5393 34 1 1.1851 1.5209 -3.2799 35 1 0.9140 0.2295 -2.0854 36 1 2.1623 -1.7273 -4.8666 37 1 -2.0467 6.1176 -1.2267 38 1 -2.0569 5.4102 -2.8599 39 1 -3.2823 4.9148 -1.6678 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259718849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:03 Heat of formation + Delta-G solvation = 92.439697 kcal Electronic energy + Delta-G solvation = -19849.600045 eV Core-core repulsion = 17022.453883 eV Total energy + Delta-G solvation = -2827.146161 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.60531 -38.19619 -33.45436 -33.02265 -32.32582 -31.43531 -29.79421 -27.50655 -27.43732 -25.09317 -22.22951 -21.59588 -21.44927 -21.07732 -18.58133 -17.58134 -16.60962 -15.71174 -15.33000 -14.92397 -14.59905 -13.79429 -13.72149 -13.12736 -13.01227 -12.75748 -12.55751 -12.28224 -12.14879 -11.62926 -11.39427 -11.15461 -11.00398 -10.85227 -10.80368 -10.53396 -10.36888 -10.34702 -9.97643 -9.92622 -9.71889 -9.54961 -9.12037 -8.54121 -8.28568 -7.26010 -6.16975 -4.21101 2.31453 3.16342 3.20872 3.28726 3.29537 3.45817 4.30579 4.65639 4.74454 5.13313 5.18408 5.29870 5.46140 5.52212 5.73652 5.78505 5.87062 5.93960 6.12358 6.14207 6.24347 6.33314 6.39161 6.44061 6.57169 6.64709 6.72082 6.76272 6.90363 7.17664 7.31727 7.37885 7.54566 7.62834 7.80813 7.95432 7.99924 8.16139 8.83947 9.34256 9.42914 10.93322 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.007432 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.701030 B = 3766.519958 C = 4165.203771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.040 3.960 3 N -0.513 5.513 4 C 0.037 3.963 5 C -0.143 4.143 6 C 0.163 3.837 7 H 0.081 0.919 8 C -0.004 4.004 9 C -0.528 4.528 10 H 0.066 0.934 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.214 3.786 18 N -0.270 5.270 19 N -0.305 5.305 20 C 0.148 3.852 21 C -0.060 4.060 22 N -0.583 5.583 23 H 0.423 0.577 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.010 0.990 35 H 0.054 0.946 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 9.532 3.749 10.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 N -0.237 5.237 4 C -0.090 4.090 5 C -0.201 4.201 6 C 0.051 3.949 7 H 0.099 0.901 8 C -0.043 4.043 9 C -0.566 4.566 10 H 0.083 0.917 11 C -0.139 4.139 12 N -0.524 5.524 13 Si 0.717 3.283 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.055 4.055 18 N -0.110 5.110 19 N -0.147 5.147 20 C -0.120 4.120 21 C -0.119 4.119 22 N -0.196 5.196 23 H 0.261 0.739 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.479 8.843 5.261 10.584 hybrid contribution 2.198 0.092 -2.401 3.257 sum -0.280 8.936 2.860 9.386 Atomic orbital electron populations 1.21971 0.94839 0.98900 1.03489 1.22296 0.96116 0.88671 1.01660 1.61987 1.12713 1.16876 1.32167 1.22320 0.88770 0.96482 1.01458 1.21786 0.99661 0.97342 1.01317 1.20185 0.86401 0.96234 0.92062 0.90104 1.19917 0.98820 0.94323 0.91201 1.21202 0.92719 1.19213 1.23415 0.91659 1.24977 0.96631 0.96508 0.95745 1.69967 1.29078 1.26843 1.26473 0.86630 0.84459 0.79504 0.77713 1.20440 1.21174 1.19806 1.25273 1.00029 0.88392 0.91812 1.74592 0.97571 1.18971 1.19855 1.74230 1.21495 1.03734 1.15262 1.24630 0.86976 1.02179 0.98239 1.20086 0.97784 0.93253 1.00810 1.43883 1.15803 1.27334 1.32556 0.73864 0.91686 0.91908 0.94837 0.90108 0.93016 0.91771 0.91511 0.93075 0.93299 0.92879 0.97143 0.92798 0.92756 0.90306 0.90904 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 7.75 37.16 0.29 -2.51 16 2 C 0.04 0.82 5.07 -3.83 -0.02 0.80 16 3 N -0.51 -10.10 4.23 -228.04 -0.96 -11.07 16 4 C 0.04 0.66 5.43 -3.82 -0.02 0.64 16 5 C -0.14 -2.17 10.00 37.16 0.37 -1.80 16 6 C 0.16 3.28 2.11 -68.86 -0.15 3.13 16 7 H 0.08 1.56 6.12 -51.93 -0.32 1.24 16 8 C 0.00 -0.09 3.72 -27.88 -0.10 -0.20 16 9 C -0.53 -13.32 7.00 -34.44 -0.24 -13.56 16 10 H 0.07 1.59 4.95 -52.48 -0.26 1.33 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -24.99 13.29 55.43 0.74 -24.26 16 13 Si 0.89 20.33 29.54 -169.99 -5.02 15.30 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 17 C 0.21 4.17 6.45 -154.99 -1.00 3.17 16 18 N -0.27 -5.68 7.89 32.80 0.26 -5.42 16 19 N -0.31 -5.98 12.21 32.79 0.40 -5.58 16 20 C 0.15 2.32 8.30 -154.99 -1.29 1.03 16 21 C -0.06 -0.60 10.51 36.00 0.38 -0.22 16 22 N -0.58 -9.23 6.20 -7.60 -0.05 -9.28 16 23 H 0.42 5.24 8.96 -40.82 -0.37 4.88 16 24 H 0.06 1.36 7.21 -51.93 -0.37 0.99 16 25 H 0.06 1.43 4.17 -51.93 -0.22 1.22 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.91 4.86 -51.93 -0.25 1.66 16 28 H 0.05 0.98 7.87 -51.93 -0.41 0.57 16 29 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 30 H 0.07 1.31 4.73 -51.93 -0.25 1.06 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.75 6.49 -51.92 -0.34 0.41 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.01 0.27 8.13 -51.93 -0.42 -0.16 16 35 H 0.05 1.41 4.33 -51.93 -0.22 1.18 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 299.29 15.07 4.51 4.51 Total: -1.00 -30.57 299.29 -7.51 -38.07 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.50 Total: 5.61 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.87 Total: -7.90 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.38 Total: -55.59 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.57 -7.51 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259718849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.515 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds