Wall clock time and date at job start Mon Mar 30 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.31319 * 126.07330 * 60.02537 * 4 2 1 6 6 N 1.28573 * 110.20222 * 180.02562 * 5 4 2 7 7 C 1.33021 * 109.35664 * 359.97438 * 6 5 4 8 8 C 1.40124 * 126.65834 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00665 * 179.97438 * 8 7 6 10 10 C 1.40240 * 119.99877 * 359.97438 * 8 7 6 11 11 N 1.30690 * 120.00120 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00232 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46987 * 0.02562 * 12 10 8 14 14 H 1.48513 * 109.46865 * 120.00076 * 12 10 8 15 15 H 1.48498 * 109.47499 * 239.99810 * 12 10 8 16 16 N 1.35294 * 126.08247 * 239.71506 * 4 2 1 17 17 C 1.46507 * 127.04298 * 359.97438 * 16 4 2 18 18 C 1.52999 * 109.47220 * 90.00007 * 17 16 4 19 19 N 1.46899 * 109.46752 * 180.02562 * 18 17 16 20 20 C 1.46905 * 110.99737 * 169.99690 * 19 18 17 21 21 C 1.46904 * 111.00050 * 293.94463 * 19 18 17 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 0.96991 * 120.00370 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.46869 * 209.99489 * 17 16 4 31 31 H 1.08996 * 109.47067 * 329.99084 * 17 16 4 32 32 H 1.09008 * 109.46855 * 299.99402 * 18 17 16 33 33 H 1.08990 * 109.47478 * 59.99397 * 18 17 16 34 34 H 1.08994 * 109.47139 * 59.99947 * 20 19 18 35 35 H 1.09005 * 109.47060 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.47229 * 299.99417 * 20 19 18 37 37 H 1.09005 * 109.46665 * 60.00198 * 21 19 18 38 38 H 1.08994 * 109.47374 * 180.02562 * 21 19 18 39 39 H 1.08994 * 109.46970 * 300.00977 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7902 -0.3672 -2.4745 6 7 2.3677 -1.1850 -3.2812 7 6 3.0202 -2.1085 -2.5806 8 6 3.7724 -3.1727 -3.0955 9 1 4.2610 -3.8634 -2.4241 10 6 3.8910 -3.3410 -4.4827 11 7 3.3003 -2.5050 -5.2952 12 14 4.8943 -4.7592 -5.1692 13 1 5.4573 -5.5551 -4.0490 14 1 4.0216 -5.6256 -6.0018 15 1 6.0012 -4.2249 -6.0026 16 7 2.8179 -1.8118 -1.2496 17 6 3.3431 -2.5416 -0.0928 18 6 2.3516 -3.6333 0.3146 19 7 2.8780 -4.3645 1.4748 20 6 1.8583 -5.2576 2.0411 21 6 4.0927 -5.1106 1.1200 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 3.3819 -2.6216 -6.2546 30 1 4.2982 -2.9974 -0.3539 31 1 3.4853 -1.8511 0.7384 32 1 1.3964 -3.1775 0.5757 33 1 2.2095 -4.3237 -0.5166 34 1 1.5468 -5.9786 1.2855 35 1 2.2745 -5.7870 2.8983 36 1 0.9973 -4.6701 2.3597 37 1 4.8560 -4.4161 0.7688 38 1 4.4612 -5.6431 1.9967 39 1 3.8620 -5.8263 0.3310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259838829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:32 Heat of formation + Delta-G solvation = 40.043703 kcal Electronic energy + Delta-G solvation = -19365.943602 eV Core-core repulsion = 16536.525380 eV Total energy + Delta-G solvation = -2829.418222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.74034 -38.67411 -36.44366 -35.41608 -35.01576 -30.80682 -30.12122 -28.51170 -27.96243 -27.33357 -25.47248 -23.71128 -22.57555 -21.95383 -20.26187 -18.76362 -17.71537 -16.85406 -16.62141 -16.38932 -15.89045 -15.42902 -15.32480 -15.13297 -14.71322 -14.42472 -13.86351 -13.41412 -13.32518 -13.05680 -13.01008 -12.89253 -12.85372 -12.70171 -12.57221 -12.35050 -12.12754 -12.06888 -11.86191 -11.73783 -11.45125 -11.27920 -10.40448 -10.18412 -9.51526 -9.43951 -8.48803 -6.54708 1.27983 1.38050 1.54933 1.73862 2.11229 2.31004 2.60669 3.07743 3.42049 3.75002 3.84676 3.99045 4.04422 4.24659 4.31905 4.33884 4.47622 4.52264 4.55309 4.68536 4.74695 4.81919 4.86333 4.90712 4.98076 5.01330 5.01666 5.02305 5.13600 5.19699 5.42156 5.42828 5.52080 5.84994 5.88784 6.01171 6.29323 6.42888 6.84386 7.10496 8.48148 8.90162 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.009407 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.271562 B = 2975.827688 C = 4618.975771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.008 3.992 3 C -0.129 4.129 4 C 0.102 3.898 5 N -0.352 5.352 6 N -0.399 5.399 7 C 0.308 3.692 8 C -0.476 4.476 9 H 0.092 0.908 10 C 0.030 3.970 11 N -0.793 5.793 12 Si 0.997 3.003 13 H -0.247 1.247 14 H -0.269 1.269 15 H -0.267 1.267 16 N -0.522 5.522 17 C 0.132 3.868 18 C 0.057 3.943 19 N -0.542 5.542 20 C 0.024 3.976 21 C 0.017 3.983 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.281 0.719 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.015 0.985 34 H 0.019 0.981 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -4.892 15.182 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 C -0.187 4.187 4 C -0.165 4.165 5 N -0.191 5.191 6 N -0.243 5.243 7 C 0.061 3.939 8 C -0.517 4.517 9 H 0.110 0.890 10 C -0.190 4.190 11 N -0.418 5.418 12 Si 0.816 3.184 13 H -0.170 1.170 14 H -0.194 1.194 15 H -0.192 1.192 16 N -0.221 5.221 17 C 0.008 3.992 18 C -0.073 4.073 19 N -0.267 5.267 20 C -0.124 4.124 21 C -0.131 4.131 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.115 -3.647 14.140 14.603 hybrid contribution 0.589 -1.780 -0.586 1.965 sum 0.704 -5.427 13.554 14.617 Atomic orbital electron populations 1.21690 0.93063 1.01236 1.02547 1.19479 0.96539 0.95415 0.89879 1.21705 1.00151 0.94271 1.02559 1.24703 1.01867 0.92428 0.97547 1.73873 1.21746 1.24208 0.99291 1.75479 1.19372 1.06830 1.22626 1.21926 0.96585 0.96664 0.78721 1.18533 1.30421 1.09704 0.93000 0.89010 1.26886 0.95880 0.99665 0.96591 1.70120 1.33377 1.33731 1.04613 0.84950 0.77765 0.76788 0.78851 1.17034 1.19358 1.19159 1.46218 1.43852 1.25055 1.06970 1.21464 0.97013 0.94335 0.86374 1.22235 0.97986 0.95456 0.91580 1.62016 1.06968 1.28869 1.28821 1.22465 0.95154 0.95324 0.99435 1.22546 0.92318 0.97346 1.00933 0.94128 0.93951 0.88783 0.88898 0.88771 0.94036 0.93937 0.90890 0.90162 0.87882 0.90801 0.96632 0.96249 0.89009 0.90787 0.91413 0.88846 0.96246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.18 71.98 0.66 -3.15 16 2 C 0.01 0.26 3.27 -11.54 -0.04 0.22 16 3 C -0.13 -3.87 9.18 71.98 0.66 -3.21 16 4 C 0.10 4.80 6.53 137.81 0.90 5.70 16 5 N -0.35 -20.26 12.21 -49.88 -0.61 -20.87 16 6 N -0.40 -25.49 10.53 -55.14 -0.58 -26.07 16 7 C 0.31 17.80 7.53 133.51 1.01 18.81 16 8 C -0.48 -26.17 9.06 23.21 0.21 -25.96 16 9 H 0.09 4.57 7.31 -2.91 -0.02 4.55 16 10 C 0.03 1.57 5.50 85.35 0.47 2.04 16 11 N -0.79 -46.49 11.95 21.88 0.26 -46.23 16 12 Si 1.00 39.25 29.56 68.60 2.03 41.27 16 13 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 14 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 15 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 16 N -0.52 -24.72 2.80 -510.96 -1.43 -26.15 16 17 C 0.13 4.70 5.59 86.38 0.48 5.18 16 18 C 0.06 1.82 5.28 86.30 0.46 2.28 16 19 N -0.54 -13.58 5.02 -948.85 -4.76 -18.34 16 20 C 0.02 0.48 9.57 127.69 1.22 1.71 16 21 C 0.02 0.38 9.32 127.69 1.19 1.57 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.09 2.64 6.86 -2.39 -0.02 2.62 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.28 14.90 8.29 -92.72 -0.77 14.14 16 30 H 0.08 2.88 5.93 -2.39 -0.01 2.86 16 31 H 0.10 3.15 7.16 -2.39 -0.02 3.14 16 32 H 0.07 2.35 8.06 -2.38 -0.02 2.34 16 33 H 0.02 0.59 8.12 -2.39 -0.02 0.57 16 34 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 1.42 8.12 -2.38 -0.02 1.40 16 36 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 37 H 0.07 1.61 6.47 -2.38 -0.02 1.60 16 38 H 0.09 1.63 8.12 -2.39 -0.02 1.61 16 39 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -75.20 321.11 3.14 -72.06 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.02 Total: 19.14 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 7.22 Total: 5.19 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -7.12 Total: -137.66 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.27 kcal Total: -75.20 3.14 -72.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.106 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds