Wall clock time and date at job start Mon Mar 30 2020 04:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 120.00083 * 2 1 4 4 H 1.48507 * 109.46496 * 270.00031 * 3 2 1 5 5 H 1.48501 * 109.47255 * 29.99287 * 3 2 1 6 6 H 1.48494 * 109.47185 * 149.99782 * 3 2 1 7 7 C 1.37878 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99918 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00025 * 179.97438 * 7 2 1 10 10 H 1.09001 * 108.82553 * 61.49829 * 9 7 2 11 11 C 1.54172 * 108.85777 * 303.09604 * 9 7 2 12 12 C 1.53816 * 111.96947 * 197.68097 * 11 9 7 13 13 C 1.50813 * 111.62478 * 319.03880 * 12 11 9 14 14 N 1.47640 * 108.05263 * 95.05689 * 13 12 11 15 15 C 1.46899 * 110.99794 * 150.35155 * 14 13 12 16 16 C 1.52997 * 109.46772 * 204.91844 * 15 14 13 17 17 H 1.09003 * 110.27556 * 303.13193 * 16 15 14 18 18 C 1.54600 * 110.30775 * 180.93641 * 16 15 14 19 19 C 1.54936 * 102.92241 * 219.12631 * 18 16 15 20 20 N 1.48527 * 103.22804 * 37.41596 * 19 18 16 21 21 C 1.47906 * 105.82004 * 320.79020 * 20 19 18 22 22 C 1.39777 * 114.75672 * 277.19985 * 14 13 12 23 23 C 1.50754 * 108.85496 * 180.02562 * 9 7 2 24 24 H 0.96994 * 120.00115 * 0.02562 * 1 2 3 25 25 H 1.09002 * 108.97758 * 318.31855 * 11 9 7 26 26 H 1.08998 * 108.98260 * 77.03527 * 11 9 7 27 27 H 1.09004 * 109.05381 * 79.59443 * 12 11 9 28 28 H 1.09006 * 109.04877 * 198.56193 * 12 11 9 29 29 H 1.09006 * 109.74375 * 335.42358 * 13 12 11 30 30 H 1.08998 * 109.75093 * 214.69782 * 13 12 11 31 31 H 1.08997 * 109.47042 * 324.91525 * 15 14 13 32 32 H 1.09000 * 109.47449 * 84.91955 * 15 14 13 33 33 H 1.09000 * 110.72385 * 337.48952 * 18 16 15 34 34 H 1.09002 * 110.72071 * 100.76755 * 18 16 15 35 35 H 1.09004 * 110.66880 * 278.97919 * 19 18 16 36 36 H 1.09001 * 110.80996 * 155.92147 * 19 18 16 37 37 H 1.00899 * 111.00187 * 81.30858 * 20 19 18 38 38 H 1.08996 * 109.92036 * 265.97450 * 21 20 19 39 39 H 1.09002 * 110.08020 * 144.77296 * 21 20 19 40 40 H 1.09006 * 109.01724 * 182.86228 * 22 14 13 41 41 H 1.09001 * 109.02700 * 301.76209 * 22 14 13 42 42 H 1.09002 * 109.53860 * 93.96675 * 23 9 7 43 43 H 1.08999 * 109.61798 * 333.73856 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8637 -0.7012 0.9061 11 6 4.0094 -0.3982 -1.2230 12 6 5.4814 -0.7039 -1.5482 13 6 6.3178 -0.8039 -0.2971 14 7 6.4026 -2.2277 0.0839 15 6 7.6643 -2.5119 0.7805 16 6 8.0168 -3.9914 0.6139 17 1 7.2046 -4.6172 0.9839 18 6 9.3309 -4.3173 1.3601 19 6 10.0423 -5.2998 0.3962 20 7 9.7119 -4.7576 -0.9465 21 6 8.3048 -4.3090 -0.8652 22 6 5.3095 -2.7047 0.8129 23 6 3.9988 -2.6207 0.0001 24 1 -0.4850 0.8400 -0.0004 25 1 3.3952 -0.6540 -2.0864 26 1 3.9053 0.6674 -1.0189 27 1 5.5375 -1.6481 -2.0900 28 1 5.8793 0.0917 -2.1782 29 1 5.8487 -0.2351 0.5058 30 1 7.3172 -0.4142 -0.4901 31 1 8.4596 -1.8990 0.3563 32 1 7.5542 -2.2818 1.8402 33 1 9.9276 -3.4162 1.5020 34 1 9.1226 -4.7977 2.3161 35 1 9.6449 -6.3082 0.5124 36 1 11.1198 -5.2911 0.5601 37 1 10.3224 -3.9913 -1.1874 38 1 7.6416 -5.1020 -1.2107 39 1 8.1615 -3.4147 -1.4717 40 1 5.4916 -3.7439 1.0870 41 1 5.2020 -2.1116 1.7211 42 1 4.1834 -2.9430 -1.0247 43 1 3.2459 -3.2645 0.4548 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259901177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:13 Heat of formation + Delta-G solvation = 3.970977 kcal Electronic energy + Delta-G solvation = -19758.216267 eV Core-core repulsion = 17030.774157 eV Total energy + Delta-G solvation = -2727.442110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62211 -38.12519 -34.79720 -32.32344 -31.38609 -30.61310 -29.09872 -26.88829 -25.20269 -23.95161 -22.44887 -21.80543 -20.41317 -19.66036 -18.57437 -16.70278 -16.52083 -15.88119 -15.55117 -14.73752 -14.55616 -14.29875 -13.99343 -13.78894 -13.03789 -12.86822 -12.63832 -12.53640 -12.04079 -11.73341 -11.67355 -11.54848 -11.36792 -11.27296 -10.95097 -10.85560 -10.71205 -10.41450 -10.14541 -9.93432 -9.75534 -9.56037 -9.01192 -8.85902 -8.73044 -8.49752 -7.87240 -6.04595 -4.01957 3.29079 3.37677 3.40505 4.07631 4.16728 4.43287 4.62488 4.73992 4.95358 5.16225 5.21303 5.26844 5.36383 5.38895 5.51307 5.54190 5.64396 5.68411 5.72897 5.80527 5.86578 5.91319 5.95030 6.09294 6.13140 6.19158 6.23186 6.35655 6.40050 6.59646 6.65370 6.67942 6.83356 6.94725 7.09362 7.23289 7.37806 7.48104 7.60867 7.79768 7.85577 8.56951 9.00526 9.59167 11.09088 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044648 B = 0.005015 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.974673 B = 5582.065919 C = 5752.261772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.013 3.987 10 H 0.018 0.982 11 C -0.123 4.123 12 C -0.116 4.116 13 C 0.068 3.932 14 N -0.548 5.548 15 C 0.068 3.932 16 C -0.113 4.113 17 H 0.078 0.922 18 C -0.154 4.154 19 C 0.043 3.957 20 N -0.680 5.680 21 C 0.056 3.944 22 C 0.071 3.929 23 C -0.092 4.092 24 H 0.262 0.738 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.333 0.667 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.015 0.985 42 H 0.060 0.940 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.519 -5.798 0.971 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.006 4.006 10 H 0.036 0.964 11 C -0.160 4.160 12 C -0.154 4.154 13 C -0.058 4.058 14 N -0.272 5.272 15 C -0.060 4.060 16 C -0.134 4.134 17 H 0.097 0.903 18 C -0.194 4.194 19 C -0.087 4.087 20 N -0.306 5.306 21 C -0.073 4.073 22 C -0.058 4.058 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.033 0.967 42 H 0.079 0.921 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.197 -6.569 0.203 20.291 hybrid contribution 0.275 2.355 1.372 2.739 sum 19.472 -4.214 1.575 19.985 Atomic orbital electron populations 1.69910 1.06283 1.26788 1.51286 1.25058 0.94657 0.99025 0.94627 0.86829 0.79324 0.83657 0.77940 1.20744 1.22875 1.19493 1.21272 0.89054 0.94297 1.50299 0.90900 1.18993 0.96499 0.92063 0.93015 0.96427 1.22449 0.93603 0.98897 1.01083 1.21448 0.96078 1.01380 0.96528 1.21838 0.98845 0.86885 0.98235 1.58890 1.02011 1.18784 1.47483 1.22150 0.92114 0.95329 0.96419 1.22439 0.97287 0.96788 0.96858 0.90333 1.23161 0.96750 0.99858 0.99608 1.23077 0.99456 0.98723 0.87433 1.62752 1.04358 1.35775 1.27746 1.22668 0.88960 1.00547 0.95120 1.21115 0.91512 0.98437 0.94731 1.21406 0.93399 0.98780 0.99366 0.92801 0.91966 0.94516 0.90922 0.93405 0.93834 0.92164 0.91594 0.95074 0.91614 0.91081 0.90389 0.91138 0.85189 0.90837 0.90454 0.92233 0.96658 0.92131 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 1.96 5.44 -17.82 -0.10 1.86 16 3 Si 0.89 22.46 24.12 -169.99 -4.10 18.36 16 4 H -0.28 -6.89 7.04 56.52 0.40 -6.50 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.27 -6.52 6.36 56.52 0.36 -6.16 16 7 C -0.51 -14.40 8.92 -34.44 -0.31 -14.71 16 8 H 0.07 2.22 7.69 -52.48 -0.40 1.81 16 9 C 0.01 0.30 1.25 -92.28 -0.12 0.19 16 10 H 0.02 0.43 5.70 -51.93 -0.30 0.14 16 11 C -0.12 -2.65 4.23 -25.69 -0.11 -2.75 16 12 C -0.12 -2.00 5.41 -27.40 -0.15 -2.14 16 13 C 0.07 1.08 5.37 -4.51 -0.02 1.06 16 14 N -0.55 -8.12 3.50 -239.98 -0.84 -8.97 16 15 C 0.07 0.82 4.13 -3.83 -0.02 0.81 16 16 C -0.11 -1.23 3.03 -89.26 -0.27 -1.50 16 17 H 0.08 0.93 6.70 -51.93 -0.35 0.59 16 18 C -0.15 -1.37 6.61 -24.87 -0.16 -1.53 16 19 C 0.04 0.37 7.55 -1.90 -0.01 0.36 16 20 N -0.68 -6.86 7.51 -110.09 -0.83 -7.69 16 21 C 0.06 0.63 6.99 -2.75 -0.02 0.61 16 22 C 0.07 1.19 4.76 -6.73 -0.03 1.16 16 23 C -0.09 -1.82 5.14 -27.09 -0.14 -1.96 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.06 1.40 7.98 -51.93 -0.41 0.99 16 26 H 0.04 0.83 3.58 -51.93 -0.19 0.64 16 27 H 0.07 1.23 7.26 -51.93 -0.38 0.85 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.78 6.66 -51.93 -0.35 0.44 16 30 H 0.06 0.81 7.38 -51.93 -0.38 0.43 16 31 H 0.07 0.74 7.41 -51.93 -0.38 0.35 16 32 H 0.03 0.39 7.97 -51.93 -0.41 -0.02 16 33 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.33 2.94 8.92 -39.29 -0.35 2.59 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.93 7.53 -51.93 -0.39 0.54 16 40 H 0.06 0.90 6.44 -51.93 -0.33 0.57 16 41 H 0.02 0.28 7.54 -51.93 -0.39 -0.11 16 42 H 0.06 1.18 7.10 -51.93 -0.37 0.81 16 43 H 0.06 1.32 7.50 -51.93 -0.39 0.93 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -29.69 308.68 -9.28 -38.97 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.48 Total: 0.45 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -1.46 Total: -18.56 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.89 Total: -43.87 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.10 Total: 18.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.69 -9.28 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.940 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds