Wall clock time and date at job start Mon Mar 30 2020 04:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48500 * 109.46986 * 240.00274 * 3 2 1 5 5 H 1.48495 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46875 * 120.00492 * 3 2 1 7 7 C 1.38804 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00759 * 197.35407 * 7 2 1 9 9 N 1.36943 * 119.99837 * 17.35070 * 7 2 1 10 10 C 1.46924 * 120.63080 * 27.67734 * 9 7 2 11 11 C 1.53191 * 108.77910 * 126.41127 * 10 9 7 12 12 C 1.53048 * 109.30875 * 54.63324 * 11 10 9 13 13 C 1.52998 * 109.45532 * 178.62845 * 12 11 10 14 14 C 1.52998 * 109.46861 * 185.02798 * 13 12 11 15 15 N 1.46899 * 109.47431 * 179.97438 * 14 13 12 16 16 C 1.48540 * 110.99747 * 52.60380 * 15 14 13 17 17 C 1.54942 * 103.22603 * 159.72052 * 16 15 14 18 18 C 1.54598 * 102.92007 * 322.58739 * 17 16 15 19 19 C 1.47903 * 111.00306 * 170.00259 * 15 14 13 20 20 C 1.53040 * 109.53728 * 298.63595 * 12 11 10 21 21 C 1.46929 * 120.62913 * 207.69755 * 9 7 2 22 22 H 0.97003 * 120.00197 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.58430 * 6.62466 * 10 9 7 24 24 H 1.08998 * 109.70564 * 246.27076 * 10 9 7 25 25 H 1.09005 * 109.49780 * 294.68528 * 11 10 9 26 26 H 1.08999 * 109.50116 * 174.58457 * 11 10 9 27 27 H 1.09003 * 109.45561 * 58.65798 * 12 11 10 28 28 H 1.08996 * 109.47624 * 305.02790 * 13 12 11 29 29 H 1.09004 * 109.47565 * 65.03263 * 13 12 11 30 30 H 1.09001 * 109.47387 * 300.00153 * 14 13 12 31 31 H 1.09005 * 109.47202 * 60.00431 * 14 13 12 32 32 H 1.08995 * 110.66784 * 278.16053 * 16 15 14 33 33 H 1.09002 * 110.66078 * 41.29214 * 16 15 14 34 34 H 1.09002 * 110.72256 * 204.23147 * 17 16 15 35 35 H 1.08992 * 110.72364 * 80.94750 * 17 16 15 36 36 H 1.08998 * 110.30900 * 263.03845 * 18 17 16 37 37 H 1.09008 * 110.30666 * 140.87323 * 18 17 16 38 38 H 1.09004 * 109.91713 * 333.50978 * 19 15 14 39 39 H 1.08996 * 109.91885 * 94.60542 * 19 15 14 40 40 H 1.09004 * 109.49060 * 181.31754 * 20 12 11 41 41 H 1.08994 * 109.49889 * 301.41358 * 20 12 11 42 42 H 1.08996 * 109.58998 * 353.37442 * 21 9 7 43 43 H 1.08999 * 109.58271 * 113.80292 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2755 11 6 0.5005 -3.3036 -2.4297 12 6 0.8184 -4.6890 -1.8624 13 6 1.0578 -5.6683 -3.0133 14 6 1.2517 -7.0781 -2.4513 15 7 1.4809 -8.0185 -3.5562 16 6 2.5820 -7.5485 -4.4355 17 6 3.0242 -8.8388 -5.1704 18 6 2.8966 -9.9218 -4.0746 19 6 1.9074 -9.3403 -3.0476 20 6 2.0742 -4.6095 -0.9913 21 6 1.8194 -3.6547 0.1792 22 1 -0.4850 0.8401 0.0004 23 1 0.0985 -1.3254 -1.6683 24 1 -0.6758 -2.6391 -0.7477 25 1 1.3491 -2.9457 -3.0128 26 1 -0.3804 -3.3655 -3.0687 27 1 -0.0207 -5.0357 -1.2592 28 1 0.1979 -5.6593 -3.6830 29 1 1.9503 -5.3708 -3.5639 30 1 2.1116 -7.0872 -1.7816 31 1 0.3592 -7.3757 -1.9007 32 1 2.2170 -6.8069 -5.1460 33 1 3.4018 -7.1435 -3.8422 34 1 4.0562 -8.7544 -5.5109 35 1 2.3579 -9.0547 -6.0055 36 1 3.8644 -10.1029 -3.6071 37 1 2.5019 -10.8450 -4.4991 38 1 2.3996 -9.2253 -2.0818 39 1 1.0427 -9.9963 -2.9476 40 1 2.3134 -5.6010 -0.6067 41 1 2.9079 -4.2393 -1.5879 42 1 2.7401 -3.5177 0.7461 43 1 1.0470 -4.0690 0.8272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259988471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:00 Heat of formation + Delta-G solvation = 6.085099 kcal Electronic energy + Delta-G solvation = -19203.610475 eV Core-core repulsion = 16476.260040 eV Total energy + Delta-G solvation = -2727.350434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.19983 -37.65501 -34.41780 -32.35241 -30.77331 -29.75152 -29.07278 -27.73354 -24.84222 -23.13837 -22.04600 -21.35773 -20.85014 -19.90573 -18.97022 -16.73357 -16.16009 -15.87720 -14.83199 -14.65858 -14.16472 -13.88710 -13.45420 -13.39855 -13.12366 -13.04128 -12.55868 -12.34948 -12.15189 -11.66695 -11.54854 -11.29502 -11.22061 -11.12698 -10.95964 -10.74176 -10.69337 -10.59749 -10.35277 -10.11733 -10.04905 -9.79625 -9.37763 -9.26564 -8.44521 -8.40475 -6.60496 -5.73559 -3.15280 3.40962 3.46522 3.48033 3.94340 4.50457 4.53845 4.56005 4.79383 5.15128 5.15424 5.21247 5.35777 5.40957 5.46305 5.54349 5.58571 5.60301 5.65748 5.71479 5.79720 5.86174 5.86409 5.94608 6.02159 6.15462 6.17765 6.28510 6.38713 6.47310 6.62365 6.72348 6.79353 6.83577 6.91841 6.96829 7.04477 7.08164 7.46457 7.73449 7.83897 8.50858 9.27241 9.91375 10.48604 11.34739 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.047256 B = 0.003978 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.370213 B = 7036.522691 C = 7092.235739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.077 4.077 13 C -0.112 4.112 14 C 0.046 3.954 15 N -0.520 5.520 16 C 0.034 3.966 17 C -0.125 4.125 18 C -0.131 4.131 19 C 0.034 3.966 20 C -0.127 4.127 21 C 0.145 3.855 22 H 0.254 0.746 23 H 0.085 0.915 24 H 0.016 0.984 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -16.906 -8.069 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.316 5.316 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.096 4.096 13 C -0.150 4.150 14 C -0.081 4.081 15 N -0.244 5.244 16 C -0.094 4.094 17 C -0.163 4.163 18 C -0.169 4.169 19 C -0.094 4.094 20 C -0.166 4.166 21 C 0.019 3.981 22 H 0.064 0.936 23 H 0.104 0.896 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.355 -16.784 -8.315 19.029 hybrid contribution 1.141 0.924 0.555 1.570 sum 4.496 -15.860 -7.760 18.220 Atomic orbital electron populations 1.70032 1.05246 1.25506 1.54024 1.25020 0.95264 0.98340 1.01096 0.86382 0.78923 0.83464 0.78091 1.21081 1.21639 1.20940 1.19156 0.92645 0.85037 1.41314 0.91860 1.44049 1.35887 1.01318 1.50302 1.20761 0.88490 0.98277 0.87972 1.22209 0.99849 0.95474 0.99772 1.21015 0.98034 0.95162 0.95433 1.21730 1.01803 0.92856 0.98561 1.22419 1.00852 0.92597 0.92268 1.64826 1.39277 1.02320 1.18004 1.23235 0.92742 0.97239 0.96183 1.22496 1.01137 0.94623 0.98065 1.22395 0.99071 0.98899 0.96555 1.22868 0.98017 0.91791 0.96759 1.22091 0.97300 0.98491 0.98745 1.20893 0.97281 0.87067 0.92894 0.93647 0.89644 0.96625 0.92929 0.93461 0.92022 0.91713 0.92317 0.94328 0.90858 0.89902 0.93655 0.91247 0.90857 0.91688 0.91193 0.93869 0.90572 0.93507 0.92685 0.93154 0.96707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 11.19 55.49 0.62 -26.11 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -7.09 9.58 -15.06 -0.14 -7.24 16 8 H 0.06 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -15.30 3.00 -172.32 -0.52 -15.82 16 10 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 11 C -0.13 -2.63 5.36 -26.61 -0.14 -2.77 16 12 C -0.08 -1.32 2.15 -90.58 -0.19 -1.51 16 13 C -0.11 -1.59 4.34 -26.73 -0.12 -1.70 16 14 C 0.05 0.60 4.78 -3.83 -0.02 0.58 16 15 N -0.52 -6.26 5.40 -230.44 -1.24 -7.50 16 16 C 0.03 0.37 5.10 -1.89 -0.01 0.36 16 17 C -0.13 -1.11 7.06 -24.87 -0.18 -1.29 16 18 C -0.13 -1.12 6.93 -25.37 -0.18 -1.29 16 19 C 0.03 0.34 6.70 -2.75 -0.02 0.33 16 20 C -0.13 -2.26 5.14 -26.61 -0.14 -2.40 16 21 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 22 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.84 6.80 -51.93 -0.35 0.49 16 30 H 0.04 0.51 6.20 -51.93 -0.32 0.19 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.92 7.66 -51.93 -0.40 0.52 16 33 H 0.05 0.52 8.00 -51.93 -0.42 0.10 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.04 0.44 7.57 -51.93 -0.39 0.05 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.73 6.50 -51.93 -0.34 0.39 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -29.59 323.12 -10.55 -40.14 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.99 Total: -2.88 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.26 Total: -9.70 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -1.14 Total: -49.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.59 -10.55 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.226 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds