Wall clock time and date at job start Mon Mar 30 2020 04:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00180 * 2 1 4 4 H 1.48501 * 109.47216 * 240.00306 * 3 2 1 5 5 H 1.48507 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47135 * 120.00126 * 3 2 1 7 7 C 1.38804 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00130 * 194.11540 * 7 2 1 9 9 N 1.36937 * 120.00044 * 14.38692 * 7 2 1 10 10 C 1.46926 * 120.62827 * 30.05976 * 9 7 2 11 11 C 1.53202 * 108.77557 * 126.37055 * 10 9 7 12 12 C 1.53033 * 109.31146 * 54.63281 * 11 10 9 13 13 C 1.53042 * 109.54211 * 298.63718 * 12 11 10 14 14 C 1.46929 * 120.63463 * 209.77840 * 9 7 2 15 15 H 1.08998 * 109.58162 * 113.84416 * 14 9 7 16 16 C 1.53001 * 109.58430 * 353.42135 * 14 9 7 17 17 C 1.52995 * 109.47210 * 174.36223 * 16 14 9 18 18 N 1.46896 * 109.47135 * 177.38279 * 17 16 14 19 19 C 1.48538 * 111.00066 * 52.60452 * 18 17 16 20 20 C 1.54940 * 103.22355 * 159.72077 * 19 18 17 21 21 C 1.54588 * 102.92442 * 322.58444 * 20 19 18 22 22 C 1.47909 * 111.00176 * 169.99742 * 18 17 16 23 23 H 0.97006 * 119.99838 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.58980 * 246.15072 * 10 9 7 25 25 H 1.08993 * 109.59163 * 6.43755 * 10 9 7 26 26 H 1.08997 * 109.49499 * 174.58853 * 11 10 9 27 27 H 1.09002 * 109.49393 * 294.65271 * 11 10 9 28 28 H 1.08998 * 109.46564 * 58.65869 * 12 11 10 29 29 H 1.09002 * 109.46115 * 178.62711 * 12 11 10 30 30 H 1.08999 * 109.50275 * 181.32048 * 13 12 11 31 31 H 1.09004 * 109.49538 * 301.38653 * 13 12 11 32 32 H 1.08999 * 109.47094 * 294.36160 * 16 14 9 33 33 H 1.09010 * 109.47147 * 54.35889 * 16 14 9 34 34 H 1.09004 * 109.46871 * 297.37886 * 17 16 14 35 35 H 1.08995 * 109.47132 * 57.37763 * 17 16 14 36 36 H 1.08995 * 110.66314 * 278.15388 * 19 18 17 37 37 H 1.08991 * 110.66639 * 41.28692 * 19 18 17 38 38 H 1.09007 * 110.71898 * 204.22810 * 20 19 18 39 39 H 1.08998 * 110.72181 * 80.94844 * 20 19 18 40 40 H 1.09005 * 110.30737 * 263.04202 * 21 20 19 41 41 H 1.08996 * 110.31159 * 140.88129 * 21 20 19 42 42 H 1.08999 * 109.91685 * 333.51313 * 22 18 17 43 43 H 1.09006 * 109.91275 * 94.60111 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0657 -1.2164 0.2275 9 7 1.3577 -2.3693 -0.2957 10 6 0.2046 -2.3726 -1.2062 11 6 0.4571 -3.3956 -2.3182 12 6 0.7677 -4.7571 -1.6922 13 6 2.0325 -4.6509 -0.8372 14 6 1.8012 -3.6430 0.2871 15 1 1.0343 -4.0225 0.9623 16 6 3.1058 -3.4280 1.0570 17 6 3.4911 -4.7209 1.7786 18 7 4.7755 -4.5337 2.4666 19 6 4.7435 -3.3289 3.3349 20 6 5.9016 -3.5806 4.3330 21 6 5.8161 -5.1034 4.5850 22 6 5.0659 -5.6713 3.3661 23 1 -0.4850 0.8401 0.0004 24 1 -0.6952 -2.6465 -0.6553 25 1 0.0792 -1.3809 -1.6407 26 1 -0.4304 -3.4775 -2.9456 27 1 1.3030 -3.0721 -2.9248 28 1 -0.0686 -5.0684 -1.0663 29 1 0.9239 -5.4926 -2.4815 30 1 2.2663 -5.6263 -0.4106 31 1 2.8640 -4.3164 -1.4576 32 1 3.8972 -3.1509 0.3607 33 1 2.9693 -2.6308 1.7879 34 1 2.7215 -4.9730 2.5082 35 1 3.5822 -5.5289 1.0527 36 1 4.9287 -2.4281 2.7499 37 1 3.7912 -3.2587 3.8604 38 1 5.7406 -3.0269 5.2581 39 1 6.8601 -3.3168 3.8860 40 1 5.2586 -5.3047 5.4998 41 1 6.8157 -5.5332 4.6480 42 1 4.1346 -6.1378 3.6874 43 1 5.6886 -6.4026 2.8506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260083446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:31 Heat of formation + Delta-G solvation = 9.347034 kcal Electronic energy + Delta-G solvation = -19716.110138 eV Core-core repulsion = 16988.901152 eV Total energy + Delta-G solvation = -2727.208986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.93502 -37.60964 -33.56754 -33.00462 -30.86561 -29.78583 -28.81786 -27.00471 -24.99635 -23.31260 -21.92297 -21.05466 -20.64451 -19.58675 -18.99536 -16.39856 -15.89186 -15.71868 -14.78102 -14.49976 -14.00638 -13.80807 -13.53954 -13.25932 -12.98694 -12.67307 -12.46679 -12.37243 -12.15135 -11.48630 -11.31763 -11.19846 -11.00684 -10.88641 -10.76751 -10.68485 -10.52930 -10.32850 -10.19437 -10.09848 -9.91593 -9.85100 -9.33395 -9.12627 -8.39930 -8.19599 -6.54063 -5.71616 -3.15790 3.41013 3.46766 3.48215 4.19911 4.53584 4.72888 4.78941 4.99704 5.31444 5.39433 5.41096 5.56847 5.60874 5.66302 5.74984 5.77565 5.79718 5.80742 5.87173 5.89694 6.06557 6.11948 6.16664 6.19869 6.24017 6.38146 6.39632 6.51077 6.61462 6.70725 6.82541 6.84763 6.94472 7.05643 7.18613 7.21286 7.33644 7.49323 7.75835 7.87149 8.54085 9.29223 9.93275 10.51367 11.36765 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.007188 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.702193 B = 3894.464369 C = 5268.964124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.172 3.828 11 C -0.143 4.143 12 C -0.109 4.109 13 C -0.129 4.129 14 C 0.177 3.823 15 H 0.020 0.980 16 C -0.106 4.106 17 C 0.048 3.952 18 N -0.517 5.517 19 C 0.034 3.966 20 C -0.125 4.125 21 C -0.130 4.130 22 C 0.034 3.966 23 H 0.253 0.747 24 H 0.015 0.985 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.270 -10.022 4.690 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.047 3.953 11 C -0.182 4.182 12 C -0.147 4.147 13 C -0.168 4.168 14 C 0.070 3.930 15 H 0.038 0.962 16 C -0.144 4.144 17 C -0.081 4.081 18 N -0.242 5.242 19 C -0.093 4.093 20 C -0.163 4.163 21 C -0.168 4.168 22 C -0.094 4.094 23 H 0.063 0.937 24 H 0.033 0.967 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.538 -9.821 4.292 13.103 hybrid contribution -0.351 0.729 0.565 0.987 sum 7.187 -9.092 4.857 12.565 Atomic orbital electron populations 1.70011 1.05236 1.25368 1.54364 1.25084 0.95263 0.98244 1.01039 0.86425 0.78906 0.83648 0.78125 1.21081 1.21735 1.20918 1.19115 0.91883 0.84273 1.42373 0.91498 1.44041 1.34816 1.01846 1.50325 1.20754 0.88422 0.97638 0.88507 1.22187 0.99767 0.96616 0.99676 1.21394 0.97855 0.97230 0.98233 1.22010 0.97622 0.98495 0.98718 1.20264 0.93343 0.87681 0.91701 0.96247 1.21695 0.97693 0.95457 0.99544 1.22422 0.88451 0.99807 0.97386 1.64820 1.31662 1.02139 1.25532 1.23239 0.97167 0.94909 0.94006 1.22499 0.99468 0.95411 0.98943 1.22384 1.00559 0.96285 0.97614 1.22862 0.99093 0.94518 0.92940 0.93741 0.96685 0.89685 0.93673 0.92901 0.93097 0.94020 0.93419 0.92397 0.91436 0.90854 0.95241 0.90923 0.89500 0.93604 0.91344 0.90928 0.91845 0.91360 0.94094 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.42 11.17 55.49 0.62 -25.80 16 2 C 0.00 0.05 4.97 -17.43 -0.09 -0.03 16 3 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.68 8.49 -15.06 -0.13 -6.81 16 8 H 0.07 1.78 6.32 -52.49 -0.33 1.44 16 9 N -0.59 -14.72 2.99 -165.03 -0.49 -15.21 16 10 C 0.17 4.21 5.28 -3.71 -0.02 4.20 16 11 C -0.14 -2.87 6.08 -26.61 -0.16 -3.03 16 12 C -0.11 -1.95 5.88 -26.69 -0.16 -2.11 16 13 C -0.13 -2.35 4.98 -26.84 -0.13 -2.49 16 14 C 0.18 3.73 2.94 -67.82 -0.20 3.53 16 15 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 16 C -0.11 -2.03 3.02 -26.73 -0.08 -2.11 16 17 C 0.05 0.76 4.86 -3.83 -0.02 0.74 16 18 N -0.52 -7.68 5.40 -230.46 -1.24 -8.93 16 19 C 0.03 0.50 5.12 -1.89 -0.01 0.49 16 20 C -0.13 -1.44 7.06 -24.87 -0.18 -1.62 16 21 C -0.13 -1.37 6.93 -25.38 -0.18 -1.55 16 22 C 0.03 0.42 6.69 -2.75 -0.02 0.40 16 23 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 2.31 6.12 -51.93 -0.32 2.00 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.76 6.82 -51.93 -0.35 0.40 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 33 H 0.07 1.55 6.09 -51.92 -0.32 1.23 16 34 H 0.03 0.47 7.81 -51.93 -0.41 0.06 16 35 H 0.07 1.10 6.61 -51.93 -0.34 0.76 16 36 H 0.09 1.36 7.72 -51.93 -0.40 0.96 16 37 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 38 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.49 7.57 -51.93 -0.39 0.10 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -28.75 319.58 -10.58 -39.33 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.89 Total: -0.62 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.36 Total: -10.39 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -1.12 Total: -49.94 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.75 -10.58 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.680 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds