Wall clock time and date at job start Mon Mar 30 2020 04:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.27311 * 57.90783 * 9 7 2 11 11 C 1.54599 * 110.30641 * 295.71656 * 9 7 2 12 12 C 1.54942 * 102.92043 * 219.12506 * 11 9 7 13 13 N 1.48535 * 103.22593 * 37.41662 * 12 11 9 14 14 C 1.46897 * 111.00063 * 200.27918 * 13 12 11 15 15 C 1.52996 * 109.47044 * 287.39798 * 14 13 12 16 16 C 1.53004 * 109.47461 * 180.02562 * 15 14 13 17 17 N 1.46892 * 109.47518 * 179.97438 * 16 15 14 18 18 C 1.48541 * 111.00143 * 52.59895 * 17 16 15 19 19 C 1.54940 * 103.22460 * 159.72284 * 18 17 16 20 20 C 1.54597 * 102.92182 * 322.58761 * 19 18 17 21 21 C 1.47901 * 111.00315 * 169.99869 * 17 16 15 22 22 C 1.47907 * 105.81946 * 320.79101 * 13 12 11 23 23 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 24 24 H 1.08997 * 110.72959 * 337.48582 * 11 9 7 25 25 H 1.09007 * 110.72004 * 100.77146 * 11 9 7 26 26 H 1.09004 * 110.66755 * 278.98173 * 12 11 9 27 27 H 1.08993 * 110.66499 * 155.84867 * 12 11 9 28 28 H 1.09003 * 109.47069 * 47.39226 * 14 13 12 29 29 H 1.08992 * 109.47527 * 167.39736 * 14 13 12 30 30 H 1.08995 * 109.47288 * 299.99887 * 15 14 13 31 31 H 1.09004 * 109.47217 * 60.00036 * 15 14 13 32 32 H 1.09001 * 109.46421 * 299.99891 * 16 15 14 33 33 H 1.08995 * 109.46910 * 59.99545 * 16 15 14 34 34 H 1.08999 * 110.66752 * 278.16065 * 18 17 16 35 35 H 1.08999 * 110.66503 * 41.28681 * 18 17 16 36 36 H 1.08999 * 110.72013 * 204.23129 * 19 18 17 37 37 H 1.08997 * 110.87504 * 81.01604 * 19 18 17 38 38 H 1.09004 * 110.30652 * 263.03888 * 20 19 18 39 39 H 1.09005 * 110.38890 * 140.92048 * 20 19 18 40 40 H 1.08999 * 109.91313 * 333.50559 * 21 17 16 41 41 H 1.08996 * 109.91601 * 94.80063 * 21 17 16 42 42 H 1.08999 * 109.91413 * 265.97901 * 22 13 12 43 43 H 1.08995 * 110.07983 * 144.77600 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5915 -2.5544 -0.8665 11 6 0.4385 -2.6495 1.3060 12 6 0.6034 -4.1523 1.6456 13 7 2.0066 -4.4379 1.2508 14 6 2.2125 -5.8775 1.0435 15 6 2.2148 -6.5923 2.3961 16 6 2.4300 -8.0917 2.1803 17 7 2.4327 -8.7780 3.4791 18 6 1.2193 -8.4360 4.2645 19 6 1.1240 -9.5924 5.2912 20 6 1.5751 -10.8220 4.4698 21 6 2.3985 -10.2461 3.3029 22 6 2.2346 -3.6841 -0.0012 23 1 -0.4850 -0.8401 0.0004 24 1 0.8592 -2.0272 2.0958 25 1 -0.6104 -2.4049 1.1382 26 1 -0.0910 -4.7570 1.0622 27 1 0.4616 -4.3233 2.7126 28 1 1.4079 -6.2741 0.4243 29 1 3.1682 -6.0398 0.5452 30 1 3.0193 -6.1957 3.0154 31 1 1.2590 -6.4301 2.8945 32 1 1.6256 -8.4886 1.5609 33 1 3.3858 -8.2536 1.6822 34 1 1.3466 -7.4800 4.7725 35 1 0.3383 -8.4175 3.6229 36 1 0.0983 -9.7160 5.6388 37 1 1.7968 -9.4221 6.1317 38 1 0.7078 -11.3624 4.0905 39 1 2.1931 -11.4805 5.0803 40 1 1.9229 -10.4952 2.3544 41 1 3.4117 -10.6470 3.3300 42 1 2.0424 -4.3257 -0.8611 43 1 3.2599 -3.3156 -0.0347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260087911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:23 Heat of formation + Delta-G solvation = -7.561725 kcal Electronic energy + Delta-G solvation = -18778.019918 eV Core-core repulsion = 16050.077713 eV Total energy + Delta-G solvation = -2727.942205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.24217 -38.19026 -34.62972 -32.99304 -30.92854 -29.20758 -28.42500 -28.17979 -24.64745 -23.62944 -22.21426 -21.03007 -20.52605 -19.99097 -19.54891 -16.86755 -16.25640 -16.20085 -15.27708 -14.94679 -14.59946 -14.21663 -13.73115 -13.53109 -13.11252 -12.87806 -12.79488 -12.44132 -11.91391 -11.81465 -11.63606 -11.49669 -11.31838 -11.20748 -10.97691 -10.81507 -10.79062 -10.59081 -10.40614 -10.34238 -10.07705 -9.78172 -9.55876 -8.58730 -8.41844 -8.31248 -7.78940 -6.29223 -4.00060 3.47348 3.50840 3.64777 3.78616 4.36700 4.46723 4.57153 4.60511 4.73193 5.00468 5.05630 5.20461 5.28460 5.37161 5.40499 5.46099 5.52100 5.54843 5.60142 5.64950 5.71915 5.75488 5.80770 5.85504 5.92651 5.95448 6.09493 6.14152 6.28245 6.38350 6.44230 6.71666 6.73263 6.88838 6.89271 7.02877 7.28657 7.34306 7.72654 7.81472 8.28766 8.49804 8.93866 9.70901 11.09125 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.052889 B = 0.003464 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.284548 B = 8081.052494 C = 8247.737112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 1.073 2.927 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.585 4.585 8 H 0.051 0.949 9 C 0.024 3.976 10 H 0.019 0.981 11 C -0.110 4.110 12 C 0.034 3.966 13 N -0.514 5.514 14 C 0.049 3.951 15 C -0.111 4.111 16 C 0.049 3.951 17 N -0.517 5.517 18 C 0.033 3.967 19 C -0.125 4.125 20 C -0.132 4.132 21 C 0.034 3.966 22 C 0.052 3.948 23 H 0.271 0.729 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.018 0.982 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -19.511 7.025 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.624 4.624 8 H 0.070 0.930 9 C 0.005 3.995 10 H 0.037 0.963 11 C -0.149 4.149 12 C -0.093 4.093 13 N -0.238 5.238 14 C -0.080 4.080 15 C -0.149 4.149 16 C -0.080 4.080 17 N -0.242 5.242 18 C -0.095 4.095 19 C -0.163 4.163 20 C -0.170 4.170 21 C -0.094 4.094 22 C -0.075 4.075 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.037 0.963 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.602 -17.546 7.671 19.326 hybrid contribution -1.133 -2.291 -1.199 2.823 sum 1.469 -19.838 6.472 20.918 Atomic orbital electron populations 1.70738 1.06856 1.30875 1.46819 1.25791 0.96581 1.02560 0.93767 0.83487 0.74546 0.74946 0.76833 1.21533 1.21419 1.21519 1.22052 0.94024 0.91082 1.55211 0.93044 1.19650 0.93126 0.93779 0.92924 0.96286 1.22695 0.99329 0.92199 1.00659 1.23278 0.88471 0.98397 0.99190 1.64688 1.22996 1.05403 1.30741 1.22181 1.00316 0.89569 0.95967 1.21574 1.02860 0.92509 0.97994 1.22300 1.00989 0.94805 0.89883 1.64804 1.37870 1.04993 1.16504 1.23255 0.91490 0.99348 0.95359 1.22491 1.01333 0.94287 0.98195 1.22401 0.99578 0.98002 0.96984 1.22878 1.00508 0.88636 0.97377 1.22940 1.01736 0.94807 0.87994 0.91785 0.91328 0.93039 0.95381 0.91670 0.95641 0.91390 0.90315 0.92027 0.95015 0.90601 0.89642 0.93778 0.91173 0.90700 0.91695 0.91072 0.93912 0.90427 0.96331 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.59 13.45 55.43 0.75 -26.84 16 2 C 0.02 0.48 5.34 -17.82 -0.10 0.38 16 3 Si 1.07 25.56 29.90 -169.99 -5.08 20.47 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.59 -16.57 8.38 -34.44 -0.29 -16.86 16 8 H 0.05 1.47 7.34 -52.49 -0.39 1.08 16 9 C 0.02 0.62 2.54 -90.41 -0.23 0.39 16 10 H 0.02 0.52 7.95 -51.93 -0.41 0.10 16 11 C -0.11 -2.58 5.57 -24.87 -0.14 -2.72 16 12 C 0.03 0.67 5.91 -1.89 -0.01 0.66 16 13 N -0.51 -10.06 5.24 -230.46 -1.21 -11.27 16 14 C 0.05 0.77 4.71 -3.83 -0.02 0.75 16 15 C -0.11 -1.51 4.96 -26.73 -0.13 -1.64 16 16 C 0.05 0.57 5.03 -3.83 -0.02 0.55 16 17 N -0.52 -5.82 5.40 -230.45 -1.24 -7.06 16 18 C 0.03 0.34 5.10 -1.89 -0.01 0.33 16 19 C -0.12 -1.05 7.06 -24.87 -0.18 -1.23 16 20 C -0.13 -1.03 6.93 -25.38 -0.18 -1.21 16 21 C 0.03 0.32 6.70 -2.76 -0.02 0.30 16 22 C 0.05 1.15 6.31 -2.75 -0.02 1.13 16 23 H 0.27 8.04 5.65 -40.82 -0.23 7.81 16 24 H 0.07 1.75 7.86 -51.93 -0.41 1.34 16 25 H 0.05 1.21 7.10 -51.93 -0.37 0.85 16 26 H 0.03 0.52 7.81 -51.93 -0.41 0.11 16 27 H 0.06 1.17 7.80 -51.93 -0.41 0.76 16 28 H 0.03 0.40 7.83 -51.93 -0.41 -0.01 16 29 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.85 6.02 -51.93 -0.31 0.53 16 32 H 0.03 0.36 7.81 -51.93 -0.41 -0.04 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 35 H 0.04 0.47 8.00 -51.93 -0.42 0.05 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.04 0.39 7.57 -51.93 -0.39 -0.01 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.02 0.38 7.77 -51.93 -0.40 -0.03 16 43 H 0.07 1.67 7.39 -51.93 -0.38 1.28 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -29.90 326.49 -11.11 -41.01 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.91 Total: -2.07 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -1.33 Total: -19.16 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -1.71 Total: -45.17 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.90 -11.11 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.446 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds