Wall clock time and date at job start Mon Mar 30 2020 03:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35351 * 126.91298 * 2 1 4 4 C 1.50699 * 126.75082 * 0.02562 * 3 2 1 5 5 H 1.09000 * 109.47000 * 0.24274 * 4 3 2 6 6 C 1.52995 * 109.47059 * 240.23954 * 4 3 2 7 7 N 1.46903 * 109.46868 * 65.00304 * 6 4 3 8 8 C 1.53010 * 109.47058 * 120.24118 * 4 3 2 9 9 C 1.50695 * 109.46812 * 184.99850 * 8 4 3 10 10 H 1.08008 * 120.00223 * 0.02562 * 9 8 4 11 11 C 1.37879 * 120.00173 * 180.02562 * 9 8 4 12 12 N 1.31508 * 120.00330 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99449 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47186 * 89.99970 * 13 11 9 15 15 H 1.48502 * 109.46918 * 209.99773 * 13 11 9 16 16 H 1.48494 * 109.47499 * 329.99936 * 13 11 9 17 17 N 1.33775 * 106.49601 * 180.24038 * 3 2 1 18 18 N 1.28628 * 108.88820 * 359.78031 * 17 3 2 19 19 N 1.28718 * 110.17615 * 359.97438 * 18 17 3 20 20 C 1.46500 * 125.86449 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47473 * 60.02698 * 20 19 18 22 22 C 1.53006 * 109.47249 * 300.02399 * 20 19 18 23 23 H 1.08996 * 109.47161 * 270.15154 * 1 2 3 24 24 H 1.09000 * 109.47090 * 30.15703 * 1 2 3 25 25 H 1.09005 * 109.46789 * 150.15440 * 1 2 3 26 26 H 1.09000 * 109.47155 * 184.99368 * 6 4 3 27 27 H 1.08996 * 109.47731 * 304.99922 * 6 4 3 28 28 H 1.00898 * 111.00072 * 179.97438 * 7 6 4 29 29 H 1.00899 * 110.99951 * 303.94821 * 7 6 4 30 30 H 1.08989 * 109.46966 * 304.99924 * 8 4 3 31 31 H 1.08996 * 109.46959 * 65.00618 * 8 4 3 32 32 H 0.97000 * 120.00443 * 179.97438 * 12 11 9 33 33 H 1.08998 * 109.46845 * 180.02562 * 20 19 18 34 34 H 1.09002 * 109.47153 * 59.99757 * 21 20 19 35 35 H 1.09001 * 109.46832 * 299.99948 * 21 20 19 36 36 H 1.09004 * 109.47261 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.47002 * 60.00085 * 22 20 19 38 38 H 1.08993 * 109.46955 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.47050 * 300.00351 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3198 1.0822 0.0000 4 6 1.8960 2.5283 0.0005 5 1 0.8076 2.5879 0.0053 6 6 2.4392 3.2195 -1.2517 7 7 1.8151 2.6320 -2.4448 8 6 2.4502 3.2218 1.2468 9 6 1.9260 4.6332 1.3112 10 1 1.2634 4.9989 0.5406 11 6 2.2921 5.4577 2.3539 12 7 1.8343 6.6892 2.4104 13 14 3.4386 4.8253 3.6863 14 1 4.8457 5.1018 3.3007 15 1 3.1329 5.5099 4.9681 16 1 3.2485 3.3616 3.8492 17 7 3.5735 0.6155 -0.0054 18 7 3.5392 -0.6703 -0.0038 19 7 2.3196 -1.0819 0.0029 20 6 1.8860 -2.4812 0.0060 21 6 2.4300 -3.1809 1.2532 22 6 2.4179 -3.1829 -1.2453 23 1 -0.3633 0.0027 1.0276 24 1 -0.3633 0.8886 -0.5163 25 1 -0.3633 -0.8914 -0.5115 26 1 2.2088 4.2839 -1.2080 27 1 3.5194 3.0833 -1.3023 28 1 2.1574 3.0722 -3.2857 29 1 1.9597 1.6339 -2.4742 30 1 2.1354 2.6763 2.1363 31 1 3.5389 3.2405 1.1983 32 1 2.0915 7.2692 3.1441 33 1 0.7969 -2.5240 0.0114 34 1 2.0511 -2.6811 2.1446 35 1 3.5192 -3.1381 1.2478 36 1 2.1070 -4.2220 1.2557 37 1 3.5071 -3.1400 -1.2506 38 1 2.0949 -4.2238 -1.2431 39 1 2.0304 -2.6844 -2.1338 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260107547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:50 Heat of formation + Delta-G solvation = 74.799667 kcal Electronic energy + Delta-G solvation = -19190.351365 eV Core-core repulsion = 16362.440274 eV Total energy + Delta-G solvation = -2827.911091 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.99704 -36.87504 -35.71815 -32.72903 -32.67723 -31.51029 -30.15667 -27.67474 -27.26998 -25.70731 -23.88308 -22.68153 -21.38851 -20.18161 -18.70873 -16.92820 -16.77153 -16.25256 -15.20378 -14.93859 -14.62555 -13.94501 -13.82269 -13.57630 -13.49304 -13.09293 -12.94516 -12.60173 -12.53017 -12.40545 -12.15046 -11.80562 -11.64413 -11.37084 -11.29247 -10.95319 -10.82177 -10.53198 -10.07652 -9.83389 -9.71563 -9.52192 -9.05832 -8.46517 -8.44103 -8.13451 -5.98038 -3.95236 1.87837 2.47454 2.99591 3.38240 3.44836 3.51811 4.18745 4.50158 4.52795 4.59541 4.65997 5.02196 5.12304 5.16200 5.18229 5.25074 5.34977 5.36895 5.38673 5.58321 5.63341 5.75731 5.79586 5.93325 6.02997 6.13994 6.23132 6.49861 6.63765 6.86438 6.90585 6.99339 7.31102 7.50112 7.66193 7.84555 7.89570 8.59040 8.93080 9.07039 9.65344 11.14884 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.006187 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.794434 B = 4524.284168 C = 5057.934220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.029 4.029 3 C 0.006 3.994 4 C 0.013 3.987 5 H 0.086 0.914 6 C 0.075 3.925 7 N -0.850 5.850 8 C -0.001 4.001 9 C -0.515 4.515 10 H 0.077 0.923 11 C 0.070 3.930 12 N -0.903 5.903 13 Si 0.874 3.126 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.267 1.267 17 N -0.265 5.265 18 N -0.099 5.099 19 N -0.293 5.293 20 C 0.140 3.860 21 C -0.162 4.162 22 C -0.161 4.161 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.026 0.974 28 H 0.332 0.668 29 H 0.326 0.674 30 H 0.015 0.985 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -20.286 -6.509 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C -0.132 4.132 4 C -0.008 4.008 5 H 0.104 0.896 6 C -0.055 4.055 7 N -0.378 5.378 8 C -0.039 4.039 9 C -0.553 4.553 10 H 0.095 0.905 11 C -0.131 4.131 12 N -0.542 5.542 13 Si 0.702 3.298 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.192 1.192 17 N -0.131 5.131 18 N -0.076 5.076 19 N -0.089 5.089 20 C 0.038 3.962 21 C -0.220 4.220 22 C -0.219 4.219 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.044 0.956 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.887 -20.302 -6.086 21.279 hybrid contribution 0.533 -0.404 0.629 0.919 sum -1.353 -20.706 -5.457 21.456 Atomic orbital electron populations 1.20306 0.86313 1.03792 1.03255 1.21937 0.96195 0.86681 1.11135 1.22276 0.88648 0.97707 1.04582 1.19616 1.00456 0.83989 0.96758 0.89554 1.21834 0.95399 1.00178 0.88075 1.58892 1.65761 1.07987 1.05150 1.19537 0.96519 0.96041 0.91802 1.21118 1.29510 0.94742 1.09942 0.90456 1.24953 0.95787 0.94676 0.97707 1.69905 1.45273 1.06652 1.32406 0.86855 0.81761 0.79559 0.81610 1.20236 1.21528 1.19178 1.75044 1.21414 1.00020 1.16598 1.78161 1.01451 1.07341 1.20693 1.47346 1.05312 1.07582 1.48631 1.21591 1.00437 0.76108 0.98058 1.22140 1.03190 1.00580 0.96093 1.22138 1.03219 1.00591 0.95959 0.90489 0.88628 0.91808 0.88833 0.95616 0.85678 0.86291 0.96676 0.96250 0.92823 0.87511 0.91710 0.90747 0.90218 0.90769 0.90237 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.66 36.00 0.35 -0.55 16 2 C -0.03 -0.44 7.00 -82.09 -0.57 -1.02 16 3 C 0.01 0.11 4.79 -82.78 -0.40 -0.29 16 4 C 0.01 0.26 2.40 -91.77 -0.22 0.04 16 5 H 0.09 1.76 6.98 -51.93 -0.36 1.40 16 6 C 0.08 1.48 6.12 -3.82 -0.02 1.46 16 7 N -0.85 -13.78 9.62 -10.37 -0.10 -13.88 16 8 C 0.00 -0.02 3.50 -27.88 -0.10 -0.11 16 9 C -0.52 -14.56 8.89 -34.44 -0.31 -14.87 16 10 H 0.08 2.31 7.32 -52.48 -0.38 1.92 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 13 Si 0.87 22.55 27.47 -169.99 -4.67 17.88 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 16 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 17 N -0.26 -5.39 12.41 33.29 0.41 -4.98 16 18 N -0.10 -1.74 12.88 60.35 0.78 -0.97 16 19 N -0.29 -4.17 3.07 -50.60 -0.16 -4.33 16 20 C 0.14 1.31 3.61 -67.93 -0.25 1.06 16 21 C -0.16 -1.38 9.39 37.16 0.35 -1.03 16 22 C -0.16 -1.26 9.39 37.16 0.35 -0.91 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.10 1.16 7.30 -51.93 -0.38 0.78 16 25 H 0.06 0.54 7.17 -51.93 -0.37 0.17 16 26 H 0.09 2.03 6.82 -51.93 -0.35 1.67 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.33 4.70 9.08 -39.29 -0.36 4.35 16 29 H 0.33 5.13 8.07 -39.29 -0.32 4.81 16 30 H 0.01 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.11 0.76 6.74 -51.93 -0.35 0.41 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -33.33 318.07 -5.27 -38.60 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.19 Total: 4.27 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.91 Total: -14.26 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 1.71 Total: -51.29 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.33 -5.27 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.403 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds