Wall clock time and date at job start Mon Mar 30 2020 03:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35351 * 126.91298 * 2 1 4 4 C 1.50699 * 126.75082 * 0.02562 * 3 2 1 5 5 H 1.09000 * 109.47000 * 0.24274 * 4 3 2 6 6 C 1.52995 * 109.47059 * 240.23954 * 4 3 2 7 7 N 1.46903 * 109.46868 * 65.00304 * 6 4 3 8 8 C 1.53010 * 109.47058 * 120.24118 * 4 3 2 9 9 C 1.50695 * 109.46812 * 184.99850 * 8 4 3 10 10 H 1.08008 * 120.00223 * 0.02562 * 9 8 4 11 11 C 1.37879 * 120.00173 * 180.02562 * 9 8 4 12 12 N 1.31508 * 120.00330 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99449 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47186 * 89.99970 * 13 11 9 15 15 H 1.48502 * 109.46918 * 209.99773 * 13 11 9 16 16 H 1.48494 * 109.47499 * 329.99936 * 13 11 9 17 17 N 1.33775 * 106.49601 * 180.24038 * 3 2 1 18 18 N 1.28628 * 108.88820 * 359.78031 * 17 3 2 19 19 N 1.28718 * 110.17615 * 359.97438 * 18 17 3 20 20 C 1.46500 * 125.86449 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47473 * 60.02698 * 20 19 18 22 22 C 1.53006 * 109.47249 * 300.02399 * 20 19 18 23 23 H 1.08996 * 109.47161 * 270.15154 * 1 2 3 24 24 H 1.09000 * 109.47090 * 30.15703 * 1 2 3 25 25 H 1.09005 * 109.46789 * 150.15440 * 1 2 3 26 26 H 1.09000 * 109.47155 * 184.99368 * 6 4 3 27 27 H 1.08996 * 109.47731 * 304.99922 * 6 4 3 28 28 H 1.00898 * 111.00072 * 179.97438 * 7 6 4 29 29 H 1.00899 * 110.99951 * 303.94821 * 7 6 4 30 30 H 1.08989 * 109.46966 * 304.99924 * 8 4 3 31 31 H 1.08996 * 109.46959 * 65.00618 * 8 4 3 32 32 H 0.97000 * 120.00443 * 179.97438 * 12 11 9 33 33 H 1.08998 * 109.46845 * 180.02562 * 20 19 18 34 34 H 1.09002 * 109.47153 * 59.99757 * 21 20 19 35 35 H 1.09001 * 109.46832 * 299.99948 * 21 20 19 36 36 H 1.09004 * 109.47261 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.47002 * 60.00085 * 22 20 19 38 38 H 1.08993 * 109.46955 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.47050 * 300.00351 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3198 1.0822 0.0000 4 6 1.8960 2.5283 0.0005 5 1 0.8076 2.5879 0.0053 6 6 2.4392 3.2195 -1.2517 7 7 1.8151 2.6320 -2.4448 8 6 2.4502 3.2218 1.2468 9 6 1.9260 4.6332 1.3112 10 1 1.2634 4.9989 0.5406 11 6 2.2921 5.4577 2.3539 12 7 1.8343 6.6892 2.4104 13 14 3.4386 4.8253 3.6863 14 1 4.8457 5.1018 3.3007 15 1 3.1329 5.5099 4.9681 16 1 3.2485 3.3616 3.8492 17 7 3.5735 0.6155 -0.0054 18 7 3.5392 -0.6703 -0.0038 19 7 2.3196 -1.0819 0.0029 20 6 1.8860 -2.4812 0.0060 21 6 2.4300 -3.1809 1.2532 22 6 2.4179 -3.1829 -1.2453 23 1 -0.3633 0.0027 1.0276 24 1 -0.3633 0.8886 -0.5163 25 1 -0.3633 -0.8914 -0.5115 26 1 2.2088 4.2839 -1.2080 27 1 3.5194 3.0833 -1.3023 28 1 2.1574 3.0722 -3.2857 29 1 1.9597 1.6339 -2.4742 30 1 2.1354 2.6763 2.1363 31 1 3.5389 3.2405 1.1983 32 1 2.0915 7.2692 3.1441 33 1 0.7969 -2.5240 0.0114 34 1 2.0511 -2.6811 2.1446 35 1 3.5192 -3.1381 1.2478 36 1 2.1070 -4.2220 1.2557 37 1 3.5071 -3.1400 -1.2506 38 1 2.0949 -4.2238 -1.2431 39 1 2.0304 -2.6844 -2.1338 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:50 Heat of formation + Delta-G solvation = 49.895408 kcal Electronic energy + Delta-G solvation = -19191.431294 eV Core-core repulsion = 16362.440274 eV Total energy + Delta-G solvation = -2828.991020 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.25021 -38.19288 -36.93854 -34.80156 -33.84867 -32.91260 -31.71925 -28.62879 -28.29243 -27.35582 -25.00114 -24.34321 -23.00772 -21.40670 -20.03409 -18.99867 -17.87146 -17.49615 -16.64235 -16.53239 -15.81768 -15.65789 -15.10745 -14.91857 -14.63205 -14.25393 -14.17219 -13.86267 -13.83450 -13.34652 -13.25435 -13.19595 -12.84981 -12.70577 -12.59650 -12.42576 -12.18460 -12.02935 -11.84060 -11.81135 -11.40386 -11.19931 -10.80757 -10.73778 -9.79960 -9.55283 -8.26642 -6.27666 0.68261 1.32049 1.33792 1.45475 1.49276 1.58954 2.35598 3.08111 3.37013 3.55269 3.71929 3.82224 3.85133 3.98472 4.05007 4.25300 4.39576 4.53258 4.61707 4.63676 4.73142 4.74216 4.77234 4.83220 4.95926 4.98081 5.07355 5.16470 5.20339 5.23777 5.31933 5.37150 5.59626 5.69481 5.85297 6.20244 6.31826 6.61375 6.78333 7.35911 7.62437 8.89302 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.006187 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.794434 B = 4524.284168 C = 5057.934220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.011 4.011 3 C -0.025 4.025 4 C 0.023 3.977 5 H 0.088 0.912 6 C 0.087 3.913 7 N -0.838 5.838 8 C 0.008 3.992 9 C -0.514 4.514 10 H 0.050 0.950 11 C 0.016 3.984 12 N -0.944 5.944 13 Si 0.934 3.066 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 N -0.307 5.307 18 N -0.114 5.114 19 N -0.278 5.278 20 C 0.125 3.875 21 C -0.159 4.159 22 C -0.156 4.156 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.012 0.988 28 H 0.346 0.654 29 H 0.334 0.666 30 H 0.008 0.992 31 H 0.005 0.995 32 H 0.266 0.734 33 H 0.141 0.859 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.054 0.946 38 H 0.115 0.885 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 -23.408 -6.638 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C -0.164 4.164 4 C 0.002 3.998 5 H 0.106 0.894 6 C -0.044 4.044 7 N -0.367 5.367 8 C -0.030 4.030 9 C -0.552 4.552 10 H 0.069 0.931 11 C -0.181 4.181 12 N -0.585 5.585 13 Si 0.759 3.241 14 H -0.199 1.199 15 H -0.204 1.204 16 H -0.187 1.187 17 N -0.173 5.173 18 N -0.092 5.092 19 N -0.075 5.075 20 C 0.026 3.974 21 C -0.217 4.217 22 C -0.214 4.214 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.030 0.970 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.158 0.842 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.921 -23.462 -6.233 24.451 hybrid contribution 0.785 0.477 0.595 1.094 sum -2.136 -22.985 -5.638 23.763 Atomic orbital electron populations 1.20494 0.83307 1.05537 1.04418 1.22376 0.97743 0.85910 1.08314 1.21982 0.89303 0.97433 1.07677 1.19296 1.00169 0.85387 0.94961 0.89384 1.21521 0.94658 0.98710 0.89496 1.58762 1.65019 1.08442 1.04487 1.19376 0.95451 0.94331 0.93851 1.21341 1.28511 0.96418 1.08884 0.93137 1.25727 0.97431 0.94851 1.00093 1.70021 1.46972 1.07928 1.33560 0.85902 0.79753 0.79172 0.79239 1.19868 1.20373 1.18701 1.74975 1.22655 1.01374 1.18255 1.78060 1.03187 1.06383 1.21546 1.47807 1.04173 1.09264 1.46222 1.22230 1.02495 0.73489 0.99180 1.22155 1.01864 1.02573 0.95085 1.22141 1.01915 1.02464 0.94875 0.89451 0.89209 0.87798 0.91535 0.97010 0.84133 0.85437 0.97350 0.97705 0.92532 0.84160 0.92870 0.92737 0.86508 0.92729 0.86682 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 9.66 71.23 0.69 -0.86 16 2 C -0.01 -0.31 7.00 41.35 0.29 -0.02 16 3 C -0.03 -0.95 4.79 41.60 0.20 -0.75 16 4 C 0.02 0.95 2.40 -11.54 -0.03 0.92 16 5 H 0.09 3.60 6.98 -2.39 -0.02 3.58 16 6 C 0.09 3.52 6.12 86.30 0.53 4.05 16 7 N -0.84 -26.69 9.62 -186.72 -1.80 -28.48 16 8 C 0.01 0.42 3.50 29.85 0.10 0.53 16 9 C -0.51 -29.88 8.89 25.60 0.23 -29.65 16 10 H 0.05 3.15 7.32 -2.91 -0.02 3.12 16 11 C 0.02 0.97 5.47 84.66 0.46 1.44 16 12 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 13 Si 0.93 47.05 27.47 68.60 1.88 48.93 16 14 H -0.27 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 17 N -0.31 -12.55 12.41 -48.60 -0.60 -13.15 16 18 N -0.11 -3.96 12.88 37.02 0.48 -3.48 16 19 N -0.28 -7.34 3.07 -314.01 -0.96 -8.30 16 20 C 0.13 1.88 3.61 44.99 0.16 2.04 16 21 C -0.16 -2.21 9.39 71.98 0.68 -1.54 16 22 C -0.16 -1.90 9.39 71.98 0.68 -1.23 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.09 1.93 7.30 -2.39 -0.02 1.91 16 25 H 0.10 1.21 7.17 -2.38 -0.02 1.19 16 26 H 0.07 3.02 6.82 -2.39 -0.02 3.00 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.35 9.52 9.08 -89.70 -0.81 8.71 16 29 H 0.33 10.10 8.07 -89.69 -0.72 9.37 16 30 H 0.01 0.42 7.20 -2.39 -0.02 0.41 16 31 H 0.00 0.25 7.57 -2.39 -0.02 0.23 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.14 1.21 6.74 -2.39 -0.02 1.20 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -74.85 318.07 2.75 -72.10 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -0.54 Total: 16.69 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 3.99 Total: -25.07 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.59 Total: -112.66 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.88 Total: 48.93 kcal Total: -74.85 2.75 -72.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.999 kcal (2) G-P(sol) polarization free energy of solvation -74.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds