Wall clock time and date at job start Mon Mar 30 2020 04:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48500 * 109.46713 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47358 * 299.99734 * 3 2 1 6 6 H 1.48501 * 109.47242 * 60.00317 * 3 2 1 7 7 C 1.37874 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99615 * 175.84725 * 7 2 1 9 9 C 1.50699 * 120.00192 * 355.84060 * 7 2 1 10 10 C 1.52993 * 110.28700 * 63.01336 * 9 7 2 11 11 N 1.46898 * 109.47569 * 57.15662 * 10 9 7 12 12 C 1.54264 * 110.32051 * 185.13436 * 9 7 2 13 13 C 1.54384 * 105.05964 * 119.00465 * 12 9 7 14 14 N 1.48562 * 104.59249 * 336.14376 * 13 12 9 15 15 C 1.46894 * 111.00216 * 159.03976 * 14 13 12 16 16 C 1.53001 * 109.47436 * 181.06490 * 15 14 13 17 17 C 1.53005 * 109.47196 * 180.02562 * 16 15 14 18 18 C 1.52991 * 109.47145 * 59.99969 * 17 16 15 19 19 C 1.53000 * 109.47527 * 299.99765 * 18 17 16 20 20 C 1.53004 * 109.46911 * 61.06946 * 15 14 13 21 21 C 1.48564 * 104.22138 * 39.48579 * 14 13 12 22 22 H 0.96996 * 119.99906 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47741 * 177.16221 * 10 9 7 24 24 H 1.08998 * 109.47111 * 297.15842 * 10 9 7 25 25 H 1.00903 * 111.00085 * 56.05077 * 11 10 9 26 26 H 1.00898 * 111.00569 * 180.02562 * 11 10 9 27 27 H 1.08994 * 110.32809 * 0.10799 * 12 9 7 28 28 H 1.08999 * 110.40916 * 237.93641 * 12 9 7 29 29 H 1.08998 * 110.41515 * 217.36917 * 13 12 9 30 30 H 1.08997 * 110.41570 * 94.92252 * 13 12 9 31 31 H 1.08995 * 109.47544 * 301.07141 * 15 14 13 32 32 H 1.08998 * 109.46929 * 60.00266 * 16 15 14 33 33 H 1.08994 * 109.47378 * 300.00028 * 16 15 14 34 34 H 1.09004 * 109.46601 * 300.00098 * 17 16 15 35 35 H 1.08998 * 109.46985 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.47266 * 60.00536 * 18 17 16 37 37 H 1.09001 * 109.47198 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.47358 * 180.02562 * 19 18 17 39 39 H 1.08994 * 109.47429 * 300.00615 * 19 18 17 40 40 H 1.09002 * 109.46854 * 299.99566 * 20 15 14 41 41 H 1.08995 * 109.47378 * 59.99700 * 20 15 14 42 42 H 1.09001 * 110.40995 * 79.29568 * 21 14 13 43 43 H 1.09007 * 110.41023 * 201.73925 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0824 -1.1953 -0.0683 9 6 1.2539 -2.4975 0.0935 10 6 0.3462 -2.6760 -1.1250 11 7 1.1533 -2.6110 -2.3507 12 6 2.2414 -3.6775 0.2035 13 6 1.9235 -4.3414 1.5606 14 7 1.2885 -3.2652 2.3641 15 6 0.4929 -3.8284 3.4630 16 6 -0.1654 -2.6933 4.2500 17 6 -0.9936 -3.2799 5.3949 18 6 -0.0818 -4.0830 6.3245 19 6 0.5765 -5.2182 5.5377 20 6 1.4043 -4.6318 4.3929 21 6 0.4226 -2.5475 1.3934 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1515 -3.6441 -1.0687 24 1 -0.4018 -1.8833 -1.1401 25 1 1.8952 -3.2947 -2.3318 26 1 0.5762 -2.7260 -3.1703 27 1 3.2688 -3.3139 0.1914 28 1 2.0810 -4.3845 -0.6104 29 1 2.8405 -4.6834 2.0406 30 1 1.2318 -5.1727 1.4245 31 1 -0.2778 -4.4825 3.0555 32 1 -0.8147 -2.1209 3.5875 33 1 0.6053 -2.0392 4.6576 34 1 -1.7643 -3.9343 4.9876 35 1 -1.4629 -2.4713 5.9553 36 1 0.6890 -3.4287 6.7319 37 1 -0.6719 -4.5013 7.1400 38 1 1.2258 -5.7906 6.2001 39 1 -0.1942 -5.8725 5.1304 40 1 1.8733 -5.4405 3.8323 41 1 2.1751 -3.9777 4.8005 42 1 -0.5040 -3.0981 1.2311 43 1 0.2095 -1.5388 1.7474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260133974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:19 Heat of formation + Delta-G solvation = -11.986423 kcal Electronic energy + Delta-G solvation = -20163.743976 eV Core-core repulsion = 17435.609901 eV Total energy + Delta-G solvation = -2728.134074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.15381 -37.17640 -34.01295 -31.91846 -30.80932 -30.59163 -27.88747 -27.51120 -24.50888 -23.11776 -22.23804 -21.59590 -20.07469 -19.32515 -18.36994 -16.10908 -15.72157 -14.87611 -14.62986 -14.27809 -14.05993 -13.89060 -13.64595 -13.36654 -12.92745 -12.59484 -12.17704 -11.97156 -11.90295 -11.74361 -11.20087 -11.03803 -10.92085 -10.82272 -10.77938 -10.61455 -10.31498 -10.28785 -10.04925 -9.81172 -9.57144 -9.49116 -9.06440 -8.75175 -8.21295 -7.51593 -7.37242 -5.80495 -3.79214 3.43722 3.51046 3.55810 4.61976 4.65136 4.95368 4.96480 5.22512 5.43494 5.47778 5.54971 5.70075 5.71562 5.75275 5.76720 5.83213 5.89335 5.93925 6.05494 6.15061 6.18534 6.27897 6.30153 6.43757 6.45757 6.48150 6.54372 6.58410 6.66541 6.77077 6.85816 6.93518 7.10890 7.26037 7.56742 7.80530 7.93397 8.04567 8.19015 8.38476 8.55328 8.69591 9.12972 9.81159 11.25960 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.007124 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.077136 B = 3929.395899 C = 4551.182848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.453 4.453 8 H 0.052 0.948 9 C 0.076 3.924 10 C 0.080 3.920 11 N -0.825 5.825 12 C -0.116 4.116 13 C 0.037 3.963 14 N -0.500 5.500 15 C 0.078 3.922 16 C -0.110 4.110 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.110 4.110 21 C 0.062 3.938 22 H 0.254 0.746 23 H -0.028 1.028 24 H 0.098 0.902 25 H 0.319 0.681 26 H 0.315 0.685 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.022 0.978 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.004 0.996 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 -9.292 7.530 12.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.491 4.491 8 H 0.070 0.930 9 C 0.075 3.925 10 C -0.051 4.051 11 N -0.352 5.352 12 C -0.154 4.154 13 C -0.091 4.091 14 N -0.224 5.224 15 C -0.031 4.031 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.066 4.066 22 H 0.064 0.936 23 H -0.010 1.010 24 H 0.116 0.884 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.023 0.977 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.627 -8.049 8.023 11.382 hybrid contribution -0.595 -0.692 -0.559 1.070 sum -1.222 -8.741 7.464 11.559 Atomic orbital electron populations 1.69832 1.05688 1.25734 1.52600 1.24778 0.94715 0.98541 0.95427 0.86588 0.80183 0.84434 0.76956 1.20141 1.21557 1.21607 1.20809 0.92285 0.89100 1.46926 0.92965 1.18834 0.91036 0.93106 0.89567 1.21959 0.96515 0.96171 0.90448 1.58555 1.15280 1.57754 1.03616 1.22494 1.01566 0.97684 0.93640 1.23003 0.97885 0.93153 0.95104 1.65475 1.28263 1.20270 1.08398 1.21724 0.93844 0.94722 0.92798 1.21527 0.99191 0.97608 0.96460 1.21531 0.97920 0.99201 0.96888 1.21530 0.98935 0.97452 0.97618 1.21512 0.99099 0.97559 0.97303 1.21567 0.98211 0.99071 0.95981 1.23181 0.91740 0.98678 0.92992 0.93559 1.01038 0.88372 0.86892 0.87518 0.91775 0.94287 0.91940 0.95959 0.95416 0.91508 0.91279 0.92524 0.92208 0.91982 0.92670 0.92385 0.92516 0.92487 0.91284 0.97746 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 10.06 55.43 0.56 -24.23 16 2 C 0.06 1.76 4.90 -17.82 -0.09 1.67 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.45 -12.13 7.58 -34.44 -0.26 -12.40 16 8 H 0.05 1.45 7.38 -52.48 -0.39 1.06 16 9 C 0.08 1.80 0.48 -154.28 -0.07 1.72 16 10 C 0.08 1.85 5.27 -3.83 -0.02 1.83 16 11 N -0.83 -17.34 9.15 -10.37 -0.09 -17.43 16 12 C -0.12 -2.39 5.77 -25.34 -0.15 -2.54 16 13 C 0.04 0.69 5.39 -2.18 -0.01 0.68 16 14 N -0.50 -10.18 5.20 -222.02 -1.15 -11.34 16 15 C 0.08 1.34 1.71 -67.71 -0.12 1.23 16 16 C -0.11 -1.81 5.14 -26.73 -0.14 -1.95 16 17 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 18 C -0.12 -1.38 5.92 -26.74 -0.16 -1.53 16 19 C -0.12 -1.40 5.92 -26.75 -0.16 -1.55 16 20 C -0.11 -1.60 5.08 -26.75 -0.14 -1.73 16 21 C 0.06 1.43 4.14 -2.18 -0.01 1.42 16 22 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 23 H -0.03 -0.63 8.14 -51.93 -0.42 -1.05 16 24 H 0.10 2.58 6.30 -51.93 -0.33 2.25 16 25 H 0.32 6.16 7.58 -39.29 -0.30 5.87 16 26 H 0.31 5.79 9.08 -39.29 -0.36 5.43 16 27 H 0.06 1.37 7.43 -51.93 -0.39 0.99 16 28 H 0.04 0.74 6.86 -51.93 -0.36 0.38 16 29 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 30 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 31 H 0.03 0.50 7.98 -51.93 -0.41 0.08 16 32 H 0.07 1.22 7.03 -51.93 -0.37 0.86 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.81 6.97 -51.93 -0.36 0.45 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.00 0.10 7.64 -51.93 -0.40 -0.30 16 43 H 0.10 2.63 5.93 -51.93 -0.31 2.32 16 LS Contribution 315.88 15.07 4.76 4.76 Total: -1.00 -27.58 315.88 -10.13 -37.72 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.71 Total: 8.45 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.47 Total: -14.86 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.69 Total: -53.00 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.58 -10.13 -37.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.731 kcal (2) G-P(sol) polarization free energy of solvation -27.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds